Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000654.1

Orthogroup ID

OG0007470

Physical Location & Seq

Genomic Coordinates Forward (+)

254272 .. 260654

Gene Structure 6383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000654.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggccgagcctcgggccaagcgccccaagattacaagaggtgaagatgattatatgccgggaagcataactgagattgagcttcataattttatgacctttgataagttgaagtgcatacccggatctcggctaaaccttgtaattggaccgaatggatctggaaagagctccctcgtgtgtgcaatagcattgggtttaggtggtgagccgcagctgcttgggagggcgaccagtgttggagcatatgtgaagcggggggagacatcggctcacatcaaaattacgttgagaggaaacacaagggaagagaatattattatcatgcgtaagattgacgcacgtaacaaatctgaatggttgtacaatgttttgaattatgtgggaaatggaagtcgacaagaaccctttcacatttccgaggagatgagtgcactggggatctattcccggctggaccaagtttttgatgctcctactgctgtgaaagaggttttgatcggccagtttggcttagatagatcatacattggatcccagcaaactgatcagaaagctgatctggtttccaagttggggattttggatttttggactccagagaatcactatcggtgttcagtatctagatatggtggtcatgtttcttcaagtgtagagccagtggatcgttctaaactttttctgtgtggtctggatactggagagatcgaaagactgaaatctaacaaaattgagcttgaagaatctgttgctactttacaggaaagtgttagattgcttcagattgagcaaagtcacattgaggatgaagaagctaaacttcataaacggaggttagcaaatatggagaaggcggatgacgtggatgccactatggcaaagctcaaagaacatgttgcaaaacttaatattgagcgctttcattcggtattggaacttaagggtctacttgttgaggcagtttctttcaaacaaagttttattgaacagcacatggttggcattgagtttgatgcacaggtatatccgcgacgatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000819 GO:0005575 GO:0005911 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0030054 GO:0051276 GO:0055044 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

347

Amino Acids

38.93

Weight (kDa)

6.39

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15920
fragaria_vesca	FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640
malus_domestica	MD07G1021900.v1.1
prunus_persica	Prupe.2G022000_v2.0.a1 Prupe.2G022000_v2.0.a1
pyrus_communis	pycom07g01660
rosa_chinensis	RchiOBHm_Chr1g0317911
rosa_laevigata	RLG00000029591 RLG00000030577
rosa_multiflora	Rmu_co8249473.1_g000001 Rmu_sc0000654.1_g000055 Rmu_sc0002922.1_g000001 Rmu_ssc0000008.1_g000048
rosa_roxburghii	Rroxscaffold_4G00330130
rosa_rugosa	Rorug01G0018500 Rorug01G0018600
rosa_samantha	Rh1AG030100 Rh1BG026200 Rh1CG028700 Rh1DG041400
rosa_wichuraiana	Rw1G002270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	397, 949
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	4 cut(s)	212, 256, 857, 1031
AclWI	GGATC	6 cut(s)	133, 166, 449, 528, 541, 675
AcoI	YGGCCR	2 cut(s)	3, 502
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	920
AfiI	CCNNNNNNNGG	3 cut(s)	12, 129, 576
AflII	CTTAAG	1 cut(s)	941
AflIII	ACRYGT	1 cut(s)	895
AgsI	TTSAA	6 cut(s)	112, 376, 651, 743, 973, 989
AjiI	CACGTC	1 cut(s)	865
AluBI	AGCT	7 cut(s)	82, 171, 217, 557, 739, 818, 886
AluI	AGCT	7 cut(s)	82, 171, 217, 557, 739, 818, 886
Alw21I	GWGCWC	2 cut(s)	173, 436
Alw26I	GTCTC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	6 cut(s)	133, 166, 449, 528, 541, 675
Ama87I	CYCGRG	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	920
AoxI	GGCC	3 cut(s)	3, 15, 502
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	214, 217
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	24, 921
AspS9I	GGNCC	3 cut(s)	15, 149, 457
AsuC2I	CCSGG	3 cut(s)	60, 123, 451
AsuHPI	GGTGA	2 cut(s)	53, 218
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	149, 457
BaeGI	GKGCMC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	173, 436
BbvI	GCAGC	2 cut(s)	204, 226
BciVI	GTATCC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	3 cut(s)	60, 123, 451
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	627
BfoI	RGCGCY	2 cut(s)	25, 922
BfrI	CTTAAG	1 cut(s)	941
BfuI	GTATCC	1 cut(s)	691
BglI	GCCNNNNNGGC	2 cut(s)	510, 878
BisI	GCNGC	3 cut(s)	212, 215, 218
BlsI	GCNGC	3 cut(s)	213, 216, 219
Bme1390I	CCNGG	3 cut(s)	60, 123, 451
Bme18I	GGWCC	2 cut(s)	149, 457
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	865
BmgT120I	GGNCC	3 cut(s)	15, 149, 457
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	3 cut(s)	60, 123, 451
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	460, 859, 1006
BmuI	ACTGGG	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	582, 723
BpuMI	CCSGG	3 cut(s)	60, 123, 451
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	11, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 129, 576
Bse1I	ACTGG	5 cut(s)	234, 441, 505, 662, 706
BseDI	CCNNGG	2 cut(s)	11, 420
BseGI	GGATG	3 cut(s)	814, 865, 874
BseLI	CCNNNNNNNGG	3 cut(s)	12, 129, 576
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	5 cut(s)	234, 441, 505, 662, 706
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	204, 226
BseYI	CCCAGC	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	1033
BshFI	GGCC	3 cut(s)	5, 17, 504
BsiHKAI	GWGCWC	2 cut(s)	173, 436
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	59, 123, 451
BslI	CCNNNNNNNGG	3 cut(s)	12, 129, 576
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	5, 17, 504
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	173, 436
Bsp1407I	TGTACA	1 cut(s)	363
BspACI	CCGC	4 cut(s)	212, 256, 857, 1031
BspANI	GGCC	3 cut(s)	5, 17, 504
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	1033
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	6 cut(s)	133, 166, 449, 528, 541, 675
BspTI	CTTAAG	1 cut(s)	941
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	5 cut(s)	234, 441, 505, 662, 706
BssECI	CCNNGG	2 cut(s)	11, 420
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	72, 514
BstF5I	GGATG	3 cut(s)	814, 865, 874
BstFNI	CGCG	1 cut(s)	1033
BstH2I	RGCGCY	2 cut(s)	25, 922
BstHHI	GCGC	2 cut(s)	24, 921
BstMAI	GTCTC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 479, 510, 878
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	3 cut(s)	58, 121, 449
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	1033
BstV1I	GCAGC	2 cut(s)	204, 226
BstX2I	RGATCY	4 cut(s)	125, 158, 441, 533
BstYI	RGATCY	4 cut(s)	125, 158, 441, 533
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	5, 17, 504
BtrI	CACGTC	1 cut(s)	865
BtsCI	GGATG	3 cut(s)	814, 865, 874
BtsIMutI	CAGTG	3 cut(s)	241, 434, 669
CfoI	GCGC	2 cut(s)	24, 921
Cfr13I	GGNCC	3 cut(s)	15, 149, 457
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	325, 641, 896, 997
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	72, 514
EaeI	YGGCCR	2 cut(s)	3, 502
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	872
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	149, 457
Eco47III	AGCGCT	1 cut(s)	920
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	4 cut(s)	328, 644, 899, 1000
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FatI	CATG	4 cut(s)	324, 640, 895, 996
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	397, 949
Fnu4HI	GCNGC	3 cut(s)	212, 215, 218
FokI	GGATG	3 cut(s)	821, 872, 881
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	212, 215, 218
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	2 cut(s)	23, 920
GluI	GCNGC	3 cut(s)	212, 215, 218
GsaI	CCCAGC	1 cut(s)	541
GsuI	CTGGAG	2 cut(s)	582, 723
HaeII	RGCGCY	2 cut(s)	25, 922
HaeIII	GGCC	3 cut(s)	5, 17, 504
HapII	CCGG	3 cut(s)	59, 123, 451
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	24, 921
Hin1II	CATG	4 cut(s)	328, 644, 899, 1000
Hin6I	GCGC	2 cut(s)	22, 919
HinP1I	GCGC	2 cut(s)	22, 919
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	3 cut(s)	595, 604, 746
HpaII	CCGG	3 cut(s)	59, 123, 451
HphI	GGTGA	2 cut(s)	53, 218
Hpy166II	GTNNAC	3 cut(s)	398, 434, 950
Hpy188I	TCNGA	4 cut(s)	355, 421, 552, 786
Hpy188III	TCNNGA	5 cut(s)	162, 599, 627, 695, 1041
Hpy8I	GTNNAC	3 cut(s)	398, 434, 950
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	1 cut(s)	847
HpyCH4IV	ACGT	3 cut(s)	287, 343, 864
HpyCH4V	TGCA	5 cut(s)	117, 185, 434, 902, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 479, 510, 878
HpyF3I	CTNAG	2 cut(s)	72, 514
HpySE526I	ACGT	3 cut(s)	287, 343, 864
Hsp92II	CATG	4 cut(s)	328, 644, 899, 1000
HspAI	GCGC	2 cut(s)	22, 919
Ksp22I	TGATCA	1 cut(s)	547
LmnI	GCTCC	3 cut(s)	176, 242, 478
Lsp1109I	GCAGC	2 cut(s)	204, 226
LweI	GCATC	3 cut(s)	460, 859, 1006
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	3 cut(s)	287, 343, 864
MaeIII	GTNAC	2 cut(s)	344, 797
MboII	GAAGA	5 cut(s)	56, 320, 639, 755, 824
MflI	RGATCY	4 cut(s)	125, 158, 441, 533
MhlI	GDGCHC	2 cut(s)	173, 436
MluCI	AATT	5 cut(s)	88, 144, 282, 376, 732
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	909, 942
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	3 cut(s)	59, 123, 451
MspR9I	CCNGG	3 cut(s)	60, 123, 451
MvnI	CGCG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	4 cut(s)	217, 479, 510, 878
NciI	CCSGG	3 cut(s)	60, 123, 451
NdeI	CATATG	1 cut(s)	247
NlaIII	CATG	4 cut(s)	328, 644, 899, 1000
NlaIV	GGNNCC	1 cut(s)	535
NmeAIII	GCCGAG	2 cut(s)	31, 109
NmuCI	GTSAC	1 cut(s)	797
NspI	RCATGY	1 cut(s)	899
PciI	ACATGT	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	604, 746
PkrI	GCNGC	3 cut(s)	213, 216, 219
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	1 cut(s)	895
Psp124BI	GAGCTC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	3 cut(s)	15, 149, 457
PsuI	RGATCY	4 cut(s)	125, 158, 441, 533
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	909, 942
SatI	GCNGC	3 cut(s)	212, 215, 218
Sau96I	GGNCC	3 cut(s)	15, 149, 457
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	3 cut(s)	60, 123, 451
SduI	GDGCHC	2 cut(s)	173, 436
SfaNI	GCATC	3 cut(s)	460, 859, 1006
SinI	GGWCC	2 cut(s)	149, 457
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
Sse9I	AATT	5 cut(s)	88, 144, 282, 376, 732
SsiI	CCGC	4 cut(s)	212, 256, 857, 1031
SspI	AATATT	2 cut(s)	316, 913
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	58, 121, 449
TaiI	ACGT	3 cut(s)	290, 346, 867
TaqI	TCGA	2 cut(s)	397, 711
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	5 cut(s)	88, 144, 282, 376, 732
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	604, 746
Tru1I	TTAA	2 cut(s)	909, 942
Tru9I	TTAA	2 cut(s)	909, 942
TscAI	CASTG	3 cut(s)	241, 441, 669
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	2 cut(s)	214, 217
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	4 cut(s)	74, 815, 825, 914
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	3 cut(s)	241, 441, 669
Vha464I	CTTAAG	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	149, 457
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	899
XmiI	GTMKAC	2 cut(s)	397, 949
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.