Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002922.1

Orthogroup ID

OG0007470

Physical Location & Seq

Genomic Coordinates Reverse (-)

477 .. 3064

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002922.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggccgagcctcgggccaagcgccccaagattacaagaggtgaagatgattatatgccgggaagcataactgagattgagcttcataattttatgacttttgataagttgaagtgcatacccggatctcggctaaaccttgtaattggaccgaatggatctggaaagagctccctcgtgtgtgcaatagcattgggtttaggtggtgagccgcagctgcttgggagggcgaccagtgttggagcatatgtgaagcggggggagacatcggctcacatcaaaattacgttgagaggaaacacaagggaagagaatattattatcatgcgtaagattgacgcacgtaacaaatctgaatggttgtacaatggaaaagtggtgcctaagaaagaagtaactgaaatcattcaaaggtttaacatacaagtcaacaacttaactcaagctgttgaaaaaaacggagaaactttgaatcagatgaaagcacttaatgctgaacaagaaaaagatgttgagcgtgtccgtcaaagagaagaacttcttgcaaaggctgagaccatgaaaaagaaattgccttggctaaagtatgatatgaagaagtctgaatatatggaagctaaggagaaggaaaaggcttcaaagaagaagttggatgatgctgcaagaattctaaatgatcttcaagaacctattgagtacgcttacttaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000819 GO:0005575 GO:0005911 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0030054 GO:0051276 GO:0055044 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

237

Amino Acids

26.93

Weight (kDa)

9.36

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15920
fragaria_vesca	FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640
malus_domestica	MD07G1021900.v1.1
prunus_persica	Prupe.2G022000_v2.0.a1 Prupe.2G022000_v2.0.a1
pyrus_communis	pycom07g01660
rosa_chinensis	RchiOBHm_Chr1g0317911
rosa_laevigata	RLG00000029591 RLG00000030577
rosa_multiflora	Rmu_co8249473.1_g000001 Rmu_sc0000654.1_g000055 Rmu_sc0002922.1_g000001 Rmu_ssc0000008.1_g000048
rosa_roxburghii	Rroxscaffold_4G00330130
rosa_rugosa	Rorug01G0018500 Rorug01G0018600
rosa_samantha	Rh1AG030100 Rh1BG026200 Rh1CG028700 Rh1DG041400
rosa_wichuraiana	Rw1G002270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	2 cut(s)	212, 256
AclWI	GGATC	2 cut(s)	133, 166
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	666
AfaI	GTAC	2 cut(s)	365, 698
AfiI	CCNNNNNNNGG	2 cut(s)	12, 129
AgsI	TTSAA	6 cut(s)	112, 410, 452, 472, 639, 683
AluBI	AGCT	5 cut(s)	82, 171, 217, 446, 617
AluI	AGCT	5 cut(s)	82, 171, 217, 446, 617
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	257, 548
AlwI	GGATC	2 cut(s)	133, 166
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	3, 15
ApeKI	GCWGC	3 cut(s)	214, 217, 659
ApoI	RAATTY	1 cut(s)	666
Asp700I	GAANNNNTTC	2 cut(s)	405, 537
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	15, 149
AsuC2I	CCSGG	2 cut(s)	60, 123
AsuHPI	GGTGA	2 cut(s)	53, 218
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	204, 226, 646
BcnI	CCSGG	2 cut(s)	60, 123
BcoDI	GTCTC	2 cut(s)	257, 548
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	4 cut(s)	212, 215, 218, 660
BlsI	GCNGC	4 cut(s)	213, 216, 219, 661
Bme1390I	CCNGG	2 cut(s)	60, 123
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	15, 149
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	60, 123
BmsI	GCATC	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	2 cut(s)	60, 123
BsaAI	YACGTR	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	11, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 129
Bse1I	ACTGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	11, 575
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	12, 129
BseMII	CTCAG	2 cut(s)	63, 543
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	204, 226, 646
BshFI	GGCC	2 cut(s)	5, 17
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	59, 123
BslI	CCNNNNNNNGG	2 cut(s)	12, 129
BsmAI	GTCTC	2 cut(s)	257, 548
BsnI	GGCC	2 cut(s)	5, 17
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	125, 158, 676
BspACI	CCGC	2 cut(s)	212, 256
BspANI	GGCC	2 cut(s)	5, 17
BspCNI	CTCAG	2 cut(s)	64, 544
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	133, 166
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	11, 575
BssMI	GATC	3 cut(s)	125, 158, 676
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	72, 384, 552, 618
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	128, 161, 679
BstMAI	GTCTC	2 cut(s)	257, 548
BstMBI	GATC	3 cut(s)	125, 158, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 491
BstSCI	CCNGG	2 cut(s)	58, 121
BstV1I	GCAGC	3 cut(s)	204, 226, 646
BstX2I	RGATCY	2 cut(s)	125, 158
BstYI	RGATCY	2 cut(s)	125, 158
BsuRI	GGCC	2 cut(s)	5, 17
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	15, 149
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	364, 697
CviAII	CATG	2 cut(s)	325, 559
CviQI	GTAC	2 cut(s)	364, 697
DdeI	CTNAG	4 cut(s)	72, 384, 552, 618
DpnI	GATC	3 cut(s)	127, 160, 678
DpnII	GATC	3 cut(s)	125, 158, 676
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	2 cut(s)	328, 562
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	2 cut(s)	324, 558
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	212, 215, 218, 660
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	212, 215, 218, 660
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	4 cut(s)	212, 215, 218, 660
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	5, 17
HapII	CCGG	2 cut(s)	59, 123
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	328, 562
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	59, 123
HphI	GGTGA	2 cut(s)	53, 218
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	355, 477, 604
Hpy188III	TCNNGA	2 cut(s)	162, 683
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	619
HpyCH4IV	ACGT	2 cut(s)	287, 343
HpyCH4V	TGCA	4 cut(s)	117, 185, 545, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 491
HpyF3I	CTNAG	4 cut(s)	72, 384, 552, 618
HpySE526I	ACGT	2 cut(s)	287, 343
Hsp92II	CATG	2 cut(s)	328, 562
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	125, 158, 676
LmnI	GCTCC	2 cut(s)	176, 242
LpnPI	CCDG	4 cut(s)	72, 136, 147, 247
Lsp1109I	GCAGC	3 cut(s)	204, 226, 646
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	2 cut(s)	287, 343
MaeIII	GTNAC	2 cut(s)	344, 394
MalI	GATC	3 cut(s)	127, 160, 678
MboI	GATC	3 cut(s)	125, 158, 676
MboII	GAAGA	6 cut(s)	56, 320, 545, 607, 655, 671
MflI	RGATCY	2 cut(s)	125, 158
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	6 cut(s)	88, 144, 282, 569, 666, 708
MmeI	TCCRAC	2 cut(s)	220, 630
MnlI	CCTC	5 cut(s)	21, 32, 185, 219, 287
MroXI	GAANNNNTTC	2 cut(s)	405, 537
MseI	TTAA	5 cut(s)	417, 437, 489, 707, 712
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	59, 123
MspR9I	CCNGG	2 cut(s)	60, 123
MwoI	GCNNNNNNNGC	2 cut(s)	217, 491
NciI	CCSGG	2 cut(s)	60, 123
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	125, 158, 676
NlaIII	CATG	2 cut(s)	328, 562
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	2 cut(s)	31, 109
PdmI	GAANNNNTTC	2 cut(s)	405, 537
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	213, 216, 219, 661
Ppu21I	YACGTR	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	15, 149
PsuI	RGATCY	2 cut(s)	125, 158
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	365, 698
RsaNI	GTAC	2 cut(s)	364, 697
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	5 cut(s)	417, 437, 489, 707, 712
SatI	GCNGC	4 cut(s)	212, 215, 218, 660
Sau3AI	GATC	3 cut(s)	125, 158, 676
Sau96I	GGNCC	2 cut(s)	15, 149
ScrFI	CCNGG	2 cut(s)	60, 123
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	6 cut(s)	88, 144, 282, 569, 666, 708
SsiI	CCGC	2 cut(s)	212, 256
SspI	AATATT	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	58, 121
StyI	CCWWGG	1 cut(s)	575
TaiI	ACGT	2 cut(s)	290, 346
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	6 cut(s)	88, 144, 282, 569, 666, 708
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	5 cut(s)	417, 437, 489, 707, 712
Tru9I	TTAA	5 cut(s)	417, 437, 489, 707, 712
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	214, 217, 659
TspDTI	ATGAA	4 cut(s)	74, 494, 575, 608
TspGWI	ACGGA	2 cut(s)	474, 512
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	666
XmnI	GAANNNNTTC	2 cut(s)	405, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.