Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8282035.1

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Forward (+)

138 .. 748

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8282035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgaccaacaagcgtttagattggccgtccagatacaaaatagcactaggtgctgcaagaggaatatcataccttcatcatgattgcatccctcacataatccatagagatatcaagtcaagcaatatattgttggatcaaaacatggaggctcgagtgtctgatttcgggctggcaactttgatggaaccggataagactcatgtttcaacactcgtagctggaacttttggttacttagctcctgaatactttgataccggaagagcaacagcaaaaggggatgtttacagttttggagtggttttactagagcttctaactggtaaaaagcctacagatgaagcatttgttgaggaaggaacaaagcttgtgacgtgggtaagttatgaaagaatatcagagattgaccatggagaagttaacaactatcagagattttgggttttattaagagcaaaagtgtattatctttcagaaccaactgtttctgttactgaaggccaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

19.21

Weight (kDa)

5.85

Isoelectric Point (pI)

20.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	210
AjiI	CACGTC	1 cut(s)	378
AluBI	AGCT	4 cut(s)	221, 242, 316, 370
AluI	AGCT	4 cut(s)	221, 242, 316, 370
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	23, 502
ApeKI	GCWGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	47, 311
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	2 cut(s)	190, 260
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	87, 289
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	25, 504
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	191, 261
BsnI	GGCC	2 cut(s)	25, 504
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	2 cut(s)	25, 504
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	293, 487
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	238
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	87, 289
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	25, 504
BtgI	CCRYGG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	87, 289
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	79
CviAII	CATG	4 cut(s)	80, 145, 203, 413
CviJI	RGCY	9 cut(s)	25, 152, 172, 221, 242, 316, 334, 370, 504
CviKI_1	RGCY	9 cut(s)	25, 152, 172, 221, 242, 316, 334, 370, 504
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	83, 148, 206, 416
FatI	CATG	4 cut(s)	79, 144, 202, 412
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	74, 296
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	47, 311
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	25, 504
HapII	CCGG	2 cut(s)	191, 261
Hin1II	CATG	4 cut(s)	83, 148, 206, 416
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	199
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	2 cut(s)	191, 261
Hpy166II	GTNNAC	2 cut(s)	289, 424
Hpy188I	TCNGA	4 cut(s)	163, 403, 435, 478
Hpy188III	TCNNGA	3 cut(s)	30, 80, 245
Hpy8I	GTNNAC	2 cut(s)	289, 424
HpyAV	CCTTC	3 cut(s)	83, 353, 494
HpyCH4III	ACNGT	2 cut(s)	293, 487
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	56, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	4 cut(s)	83, 148, 206, 416
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	43, 158, 204, 207, 258, 274, 309
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	47, 311
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	233, 373, 493
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	53, 102, 142, 349
MseI	TTAA	2 cut(s)	423, 452
MspI	CCGG	2 cut(s)	191, 261
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	83, 148, 206, 416
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	153
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	189
PspXI	VCTCGAGB	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	423, 452
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	193
SetI	ASST	7 cut(s)	52, 75, 223, 244, 318, 372, 380
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SspMI	CTAG	2 cut(s)	47, 311
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	293, 487
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	423, 452
Tru9I	TTAA	2 cut(s)	423, 452
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	65, 357, 405
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	2 cut(s)	47, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.