Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Reverse (-)

22729833 .. 22733364

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG205300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAACAAGTAGATGACTCCCAATCCAATTCAGAGAATCCCGAAGCGAGAAACTCGACTCTCAACAGTACATCAAGTAGTGGAATTCCAATGTCAGATGTCGCCATTTTTAAATACTGCCTGGCGGGTTTAACTGAGAAGAGTCTTCTGCTTAAGGAGATTGCAACCTCTGCTTCTAATGAACAACTTCAGGATTTCGCCCATCAGGTTTCGCTGTATTCAGGATGCTCACACCATAGGCACCAAATAATAATGGCAAAGGCATTGGTTGAGGAAGGAACTAAAGCTTGGAAGTTGATCTCACAAAACAGTGACCAGGTTCAATGGGAGAGTGTGGTTTTTGAAATTGAAGACCAATTCATGAAGATTGCTTGCTGTAGGTCTAGATCTCTCACACAACAGGACTTTGAGCTACTAAAGAGAATTGCTGGTTGCAAAGAATATCTGGCCCAAGAGAACTTTGAAAAGATGTGGTGTTGGTTATATCCTGTCGCTTTTACATTATCAAAATATTGGATAAATACAATGTGGAGTTCAACAACACCCAAGTGGATAGAAGGATTCGTTACTAAGGAAGAAGCTGAATCTTCTCTTCAAGCTTCAAGGGGTTTCCAGAAACCTGGTACATTTGTACTCCGATTTCCCACATCAAGGAGTTGGCCTCATCCAGATGCTGGAAGCTTAGTTGTAACCTATCTTGGCAGCAAGTGCACCATTCACCACAAGCTTATTTCCCTGGATAATATTGTTAGGTGCGTAGTTCATTTTCTTCCCCATCCTATTTTTATATATAAGCTGTCATACTCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Laminin_G_3

Protein Analysis

270

Amino Acids

30.79

Weight (kDa)

6.5

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	70, 625, 633
AfiI	CCNNNNNNNGG	2 cut(s)	651, 674
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	7 cut(s)	323, 344, 350, 464, 537, 596, 603
AjnI	CCWGG	4 cut(s)	120, 315, 619, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AleI	CACNNNNGTG	1 cut(s)	547
AluBI	AGCT	7 cut(s)	287, 412, 581, 599, 681, 727, 796
AluI	AGCT	7 cut(s)	287, 412, 581, 599, 681, 727, 796
Alw21I	GWGCWC	1 cut(s)	713
Alw44I	GTGCAC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	2 cut(s)	447, 659
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	702
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	713
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BanI	GGYRCC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	137, 357
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	2 cut(s)	210, 783
BciT130I	CCWGG	4 cut(s)	122, 317, 621, 737
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	1 cut(s)	703
BlsI	GCNGC	1 cut(s)	704
Bme1390I	CCNGG	4 cut(s)	122, 317, 621, 737
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	4 cut(s)	122, 317, 621, 737
BmsI	GCATC	2 cut(s)	215, 661
BpiI	GAAGAC	2 cut(s)	137, 357
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BsaJI	CCNNGG	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	2 cut(s)	651, 674
BseBI	CCWGG	4 cut(s)	122, 317, 621, 737
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	230, 664, 775
BseLI	CCNNNNNNNGG	2 cut(s)	651, 674
BseMII	CTCAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	714
BshFI	GGCC	2 cut(s)	449, 661
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	651, 674
BsnI	GGCC	2 cut(s)	449, 661
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	297, 386
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	449, 661
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	2 cut(s)	297, 386
Bst2UI	CCWGG	4 cut(s)	122, 317, 621, 737
Bst4CI	ACNGT	2 cut(s)	68, 311
Bst6I	CTCTTC	2 cut(s)	134, 597
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	2 cut(s)	170, 708
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	135, 570, 682
BstF5I	GGATG	3 cut(s)	230, 664, 775
BstKTI	GATC	2 cut(s)	300, 389
BstMBI	GATC	2 cut(s)	297, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 708
BstNI	CCWGG	4 cut(s)	122, 317, 621, 737
BstSCI	CCNGG	4 cut(s)	120, 315, 619, 735
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	2 cut(s)	137, 357
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	449, 661
BtsCI	GGATG	3 cut(s)	230, 664, 775
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	448
CsiI	ACCWGGT	2 cut(s)	315, 619
Csp6I	GTAC	3 cut(s)	69, 624, 632
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	9 cut(s)	287, 412, 449, 581, 599, 661, 681, 727, 796
CviKI_1	RGCY	9 cut(s)	287, 412, 449, 581, 599, 661, 681, 727, 796
CviQI	GTAC	3 cut(s)	69, 624, 632
DdeI	CTNAG	3 cut(s)	135, 570, 682
DpnI	GATC	2 cut(s)	299, 388
DpnII	GATC	2 cut(s)	297, 386
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	134, 597
EarI	CTCTTC	2 cut(s)	134, 597
Eco57I	CTGAAG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	4 cut(s)	120, 315, 619, 735
FaeI	CATG	1 cut(s)	364
FaiI	YATR	9 cut(s)	237, 362, 484, 788, 790, 792, 802, 809, 811
FatI	CATG	1 cut(s)	360
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	703
FokI	GGATG	3 cut(s)	237, 651, 762
Fsp4HI	GCNGC	1 cut(s)	703
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	449, 661
Hin1II	CATG	1 cut(s)	364
HindIII	AAGCTT	4 cut(s)	285, 597, 679, 725
HinfI	GANTC	6 cut(s)	17, 37, 58, 142, 561, 584
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	3 cut(s)	34, 97, 638
Hpy188III	TCNNGA	7 cut(s)	41, 191, 222, 361, 384, 613, 668
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	2 cut(s)	269, 551
HpyCH4III	ACNGT	2 cut(s)	68, 311
HpyCH4V	TGCA	3 cut(s)	164, 435, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 708
HpyF3I	CTNAG	3 cut(s)	135, 570, 682
Hsp92II	CATG	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	297, 386
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	2 cut(s)	215, 661
MabI	ACCWGGT	2 cut(s)	315, 619
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	311, 565, 688
MalI	GATC	2 cut(s)	299, 388
MboI	GATC	2 cut(s)	297, 386
MboII	GAAGA	8 cut(s)	137, 151, 362, 376, 579, 584, 587, 761
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	5 cut(s)	28, 84, 345, 356, 423
MlyI	GAGTC	3 cut(s)	11, 52, 151
MnlI	CCTC	3 cut(s)	178, 265, 672
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	3 cut(s)	111, 131, 153
MslI	CAYNNNNRTG	2 cut(s)	547, 669
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	4 cut(s)	122, 317, 621, 737
MvaI	CCWGG	4 cut(s)	122, 317, 621, 737
MwoI	GCNNNNNNNGC	2 cut(s)	170, 708
NdeII	GATC	2 cut(s)	297, 386
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	37, 561, 584
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	1 cut(s)	704
PleI	GAGTC	3 cut(s)	11, 52, 150
PpsI	GAGTC	3 cut(s)	11, 52, 150
Psp6I	CCWGG	4 cut(s)	120, 315, 619, 735
PspGI	CCWGG	4 cut(s)	120, 315, 619, 735
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	3 cut(s)	70, 625, 633
RsaNI	GTAC	3 cut(s)	69, 624, 632
RseI	CAYNNNNRTG	2 cut(s)	547, 669
SaqAI	TTAA	3 cut(s)	111, 131, 153
SatI	GCNGC	1 cut(s)	703
Sau3AI	GATC	2 cut(s)	297, 386
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	3 cut(s)	11, 52, 151
ScrFI	CCNGG	4 cut(s)	122, 317, 621, 737
SduI	GDGCHC	1 cut(s)	713
SexAI	ACCWGGT	2 cut(s)	315, 619
SfaNI	GCATC	2 cut(s)	215, 661
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	547, 669
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	28, 84, 345, 356, 423
SsiI	CCGC	1 cut(s)	125
SspI	AATATT	2 cut(s)	512, 745
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	120, 315, 619, 735
TaaI	ACNGT	2 cut(s)	68, 311
TaqI	TCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	28, 84, 345, 356, 423
TatI	WGTACW	2 cut(s)	68, 631
TfiI	GAWTC	3 cut(s)	37, 561, 584
Tru1I	TTAA	3 cut(s)	111, 131, 153
Tru9I	TTAA	3 cut(s)	111, 131, 153
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	4 cut(s)	195, 349, 377, 752
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	674
Vha464I	CTTAAG	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.