Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Reverse (-)

22801068 .. 22803780

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG201900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAACAAGTAGACGACTCGCAATCCAATTCAGAGAATCCTGAAGCGAGAAACTCGACTCCCAACCGTACATCAAGTAGTAGAATTCCAATGTCAGATGTCGCCATTTTTAAATACTGCCTGGCGGGTTTAACTGAGAAGAGTCTTCTGCTCAAGGAGATTGCAACCTCTGCTTCTAATGAACAACTTCAGGATTTCGCCCATCAGGTTTCGCTGTATTCAGGATGCTCACACCATAGGCACCAAATAATAATGGCAAAGGCATTGGTTGAGGAAGGAACTAAAGCTTGGAAGTTGATCTCACAAAACAATGACCAGGTTCAATGGGAGAGTGTGGTTTTTGAAATTGAAGAGCAATTCATGAAGATTGCTTGCTGTAGGTCTAGATCTCTCACACAACAGGACTTTGAGCTACTAAAGAGAATTGCTGGTTGCAAAGAATATCTGGCCCAAGAGAACTTTGAAAAGATGTGGTGTTGGTTATATCCTGTCGCTTTTACATTATCAAAAGATTGGATAAATACAATGTGGAGTTCAACATCACCCAAGTGGATAGAAGGATTCATTACTAAGGAAGAAGCTGAATCTTCTCTTCAAGCTTCAAGGGGTTTCCAGAAACCTGGTACATTTGTACTCCGATTTCCAACATCAAGGAGTTGGCCTCATCCAGATGCTGGAAGCTTAGTTGTAACCTATCTTGGCAGCAAGTGCACCATTCACCACAAGCTTATTTCCCTGGATAATATTGTTAGTTCTGAGGAAAAGAATGCAAAGCCCCTGCAAGACATGCTTCTTGCGGAGCCCGAACTCTCTCAATTGGGAAGGATAATAAGAAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Laminin_G_3

Protein Analysis

280

Amino Acids

31.89

Weight (kDa)

6.09

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	125, 797
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	63, 173
AfaI	GTAC	3 cut(s)	70, 625, 633
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	7 cut(s)	323, 344, 350, 464, 537, 596, 603
AjnI	CCWGG	4 cut(s)	120, 315, 619, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AleI	CACNNNNGTG	1 cut(s)	547
AluBI	AGCT	6 cut(s)	287, 412, 581, 599, 681, 727
AluI	AGCT	6 cut(s)	287, 412, 581, 599, 681, 727
Alw21I	GWGCWC	1 cut(s)	713
Alw44I	GTGCAC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	2 cut(s)	447, 659
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	702
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	534, 710
BaeGI	GKGCMC	1 cut(s)	713
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	4 cut(s)	122, 317, 621, 737
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	376
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	1 cut(s)	703
BlsI	GCNGC	1 cut(s)	704
Bme1390I	CCNGG	4 cut(s)	122, 317, 621, 737
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	242, 801
BmrFI	CCNGG	4 cut(s)	122, 317, 621, 737
BmsI	GCATC	2 cut(s)	215, 661
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
BseBI	CCWGG	4 cut(s)	122, 317, 621, 737
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	2 cut(s)	230, 664
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMII	CTCAG	2 cut(s)	126, 747
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	714
BshFI	GGCC	2 cut(s)	449, 661
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	449, 661
Bsp1286I	GDGCHC	2 cut(s)	713, 804
Bsp143I	GATC	2 cut(s)	297, 386
BspACI	CCGC	2 cut(s)	125, 797
BspANI	GGCC	2 cut(s)	449, 661
BspCNI	CTCAG	2 cut(s)	127, 748
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	242, 801
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	2 cut(s)	297, 386
Bst2UI	CCWGG	4 cut(s)	122, 317, 621, 737
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	134, 345, 597
BstAPI	GCANNNNNTGC	3 cut(s)	170, 708, 787
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	135, 570, 682, 756
BstF5I	GGATG	2 cut(s)	230, 664
BstKTI	GATC	2 cut(s)	300, 389
BstMBI	GATC	2 cut(s)	297, 386
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 708, 787
BstNI	CCWGG	4 cut(s)	122, 317, 621, 737
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	4 cut(s)	120, 315, 619, 735
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	449, 661
BtsCI	GGATG	2 cut(s)	230, 664
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	448
CsiI	ACCWGGT	2 cut(s)	315, 619
Csp6I	GTAC	3 cut(s)	69, 624, 632
CviAII	CATG	2 cut(s)	361, 787
CviQI	GTAC	3 cut(s)	69, 624, 632
DdeI	CTNAG	4 cut(s)	135, 570, 682, 756
DpnI	GATC	2 cut(s)	299, 388
DpnII	GATC	2 cut(s)	297, 386
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	3 cut(s)	134, 345, 597
EarI	CTCTTC	3 cut(s)	134, 345, 597
Eco24I	GRGCYC	1 cut(s)	804
Eco57I	CTGAAG	2 cut(s)	63, 173
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	4 cut(s)	120, 315, 619, 735
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	2 cut(s)	364, 790
FaiI	YATR	4 cut(s)	237, 362, 484, 788
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	2 cut(s)	360, 786
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	703
FokI	GGATG	2 cut(s)	237, 651
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	1 cut(s)	703
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	449, 661
Hin1II	CATG	2 cut(s)	364, 790
HindIII	AAGCTT	4 cut(s)	285, 597, 679, 725
HinfI	GANTC	6 cut(s)	17, 37, 58, 142, 561, 584
HphI	GGTGA	2 cut(s)	534, 710
Hpy166II	GTNNAC	2 cut(s)	13, 711
Hpy188I	TCNGA	4 cut(s)	34, 97, 638, 757
Hpy188III	TCNNGA	7 cut(s)	41, 191, 222, 361, 384, 613, 668
Hpy8I	GTNNAC	2 cut(s)	13, 711
HpyAV	CCTTC	3 cut(s)	269, 551, 816
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	164, 435, 711, 770, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 708, 787
HpyF3I	CTNAG	4 cut(s)	135, 570, 682, 756
Hsp92II	CATG	2 cut(s)	364, 790
Kzo9I	GATC	2 cut(s)	297, 386
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	2 cut(s)	215, 661
MabI	ACCWGGT	2 cut(s)	315, 619
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	688, 836
MalI	GATC	2 cut(s)	299, 388
MboI	GATC	2 cut(s)	297, 386
MboII	GAAGA	7 cut(s)	137, 151, 362, 376, 579, 584, 587
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	713, 804
MluCI	AATT	6 cut(s)	28, 84, 345, 356, 423, 815
MlyI	GAGTC	3 cut(s)	11, 52, 151
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	4 cut(s)	178, 265, 672, 751
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	2 cut(s)	111, 131
MslI	CAYNNNNRTG	2 cut(s)	547, 669
MspR9I	CCNGG	4 cut(s)	122, 317, 621, 737
MunI	CAATTG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	4 cut(s)	122, 317, 621, 737
MwoI	GCNNNNNNNGC	3 cut(s)	170, 708, 787
NdeII	GATC	2 cut(s)	297, 386
NlaIII	CATG	2 cut(s)	364, 790
NlaIV	GGNNCC	2 cut(s)	242, 801
NmuCI	GTSAC	1 cut(s)	836
NspI	RCATGY	1 cut(s)	790
OliI	CACNNNNGTG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	37, 561, 584
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	1 cut(s)	704
PleI	GAGTC	3 cut(s)	11, 52, 150
PpsI	GAGTC	3 cut(s)	11, 52, 150
Psp6I	CCWGG	4 cut(s)	120, 315, 619, 735
PspGI	CCWGG	4 cut(s)	120, 315, 619, 735
PspN4I	GGNNCC	2 cut(s)	242, 801
PspPI	GGNCC	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	3 cut(s)	70, 625, 633
RsaNI	GTAC	3 cut(s)	69, 624, 632
RseI	CAYNNNNRTG	2 cut(s)	547, 669
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	111, 131
SatI	GCNGC	1 cut(s)	703
Sau3AI	GATC	2 cut(s)	297, 386
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	3 cut(s)	11, 52, 151
ScrFI	CCNGG	4 cut(s)	122, 317, 621, 737
SduI	GDGCHC	2 cut(s)	713, 804
SexAI	ACCWGGT	2 cut(s)	315, 619
SfaNI	GCATC	2 cut(s)	215, 661
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	547, 669
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	6 cut(s)	28, 84, 345, 356, 423, 815
SsiI	CCGC	2 cut(s)	125, 797
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	120, 315, 619, 735
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	56
TasI	AATT	6 cut(s)	28, 84, 345, 356, 423, 815
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	3 cut(s)	37, 561, 584
Tru1I	TTAA	2 cut(s)	111, 131
Tru9I	TTAA	2 cut(s)	111, 131
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	4 cut(s)	195, 349, 377, 553
Van91I	CCANNNNNTGG	1 cut(s)	674
VneI	GTGCAC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	383
XceI	RCATGY	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.