Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459989.1

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1801

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

atggcaaaggcattggttgaggaaggaactaaagcttggaagttgatctcacaaaacaatgaccaggttcaatgggacagtgtggtttttgaaattgaagagcaattcatgaagattgcttgctgtaggtctagatctctcacacaacaggactttgagctactaaagagaattgctggttgcaaagaatatctggcccaagagaactttgaaaagatgtggtgttggttatatcctgtcgcttttacattatcaaaagattggataaatacaatgtggagttcaacatcacccaagtggatagaaggattcattactaaggaagaagctgaatcttctcttcaagcttcaaggggtttccagaaacctggtacatttgtactccgatttccaacatcaaggagttggcctcatccagatgctggaagcttagttgtaacctatcttggcagcaagtgcaccattcaccacaagcttatttccctggataatattgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Laminin_G_3

Protein Analysis

166

Amino Acids

19.17

Weight (kDa)

6.82

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	373, 381
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	7 cut(s)	71, 92, 98, 212, 285, 344, 351
AjnI	CCWGG	3 cut(s)	63, 367, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AleI	CACNNNNGTG	1 cut(s)	295
AluBI	AGCT	6 cut(s)	35, 160, 329, 347, 429, 475
AluI	AGCT	6 cut(s)	35, 160, 329, 347, 429, 475
Alw21I	GWGCWC	1 cut(s)	461
Alw44I	GTGCAC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	195, 407
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	282, 458
BaeGI	GKGCMC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	462
BciT130I	CCWGG	3 cut(s)	65, 369, 485
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	65, 369, 485
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	65, 369, 485
BmsI	GCATC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BsaJI	CCNNGG	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
BseBI	CCWGG	3 cut(s)	65, 369, 485
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	2 cut(s)	197, 409
BsiHKAI	GWGCWC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	197, 409
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	45, 134
BspANI	GGCC	2 cut(s)	197, 409
BspHI	TCATGA	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	45, 134
Bst2UI	CCWGG	3 cut(s)	65, 369, 485
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	93, 345
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	318, 430
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	48, 137
BstMBI	GATC	2 cut(s)	45, 134
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	3 cut(s)	65, 369, 485
BstSCI	CCNGG	3 cut(s)	63, 367, 483
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	197, 409
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	196
CsiI	ACCWGGT	2 cut(s)	63, 367
Csp6I	GTAC	2 cut(s)	372, 380
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	8 cut(s)	35, 160, 197, 329, 347, 409, 429, 475
CviKI_1	RGCY	8 cut(s)	35, 160, 197, 329, 347, 409, 429, 475
CviQI	GTAC	2 cut(s)	372, 380
DdeI	CTNAG	2 cut(s)	318, 430
DpnI	GATC	2 cut(s)	47, 136
DpnII	GATC	2 cut(s)	45, 134
Eam1104I	CTCTTC	2 cut(s)	93, 345
EarI	CTCTTC	2 cut(s)	93, 345
EcoRII	CCWGG	3 cut(s)	63, 367, 483
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 232
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	197, 409
Hin1II	CATG	1 cut(s)	112
HindIII	AAGCTT	4 cut(s)	33, 345, 427, 473
HinfI	GANTC	2 cut(s)	309, 332
HphI	GGTGA	2 cut(s)	282, 458
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	4 cut(s)	109, 132, 361, 416
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	17, 299
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	183, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	2 cut(s)	318, 430
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	45, 134
LguI	GCTCTTC	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	1 cut(s)	409
MabI	ACCWGGT	2 cut(s)	63, 367
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	2 cut(s)	47, 136
MboI	GATC	2 cut(s)	45, 134
MboII	GAAGA	5 cut(s)	110, 124, 327, 332, 335
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	3 cut(s)	93, 104, 171
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	13, 420
MslI	CAYNNNNRTG	2 cut(s)	295, 417
MspR9I	CCNGG	3 cut(s)	65, 369, 485
MvaI	CCWGG	3 cut(s)	65, 369, 485
MwoI	GCNNNNNNNGC	1 cut(s)	456
NdeII	GATC	2 cut(s)	45, 134
NlaIII	CATG	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	295
PagI	TCATGA	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	309, 332
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	452
Psp6I	CCWGG	3 cut(s)	63, 367, 483
PspGI	CCWGG	3 cut(s)	63, 367, 483
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	2 cut(s)	373, 381
RsaNI	GTAC	2 cut(s)	372, 380
RseI	CAYNNNNRTG	2 cut(s)	295, 417
SapI	GCTCTTC	1 cut(s)	93
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	45, 134
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	65, 369, 485
SduI	GDGCHC	1 cut(s)	461
SexAI	ACCWGGT	2 cut(s)	63, 367
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	295, 417
Sse9I	AATT	3 cut(s)	93, 104, 171
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	63, 367, 483
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	3 cut(s)	93, 104, 171
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	309, 332
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	97, 125, 301
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.