Rorug05G0111300

DNA-binding transcription factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004620
Physical Location & Seq
Forward (+)
9931877 .. 9938495
6619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0111300.1

Sequence Viewer

Length: 2877 bp
ATGAGAGAAGAGGTCATCAGCTCCGGAGGGACCATTGATCCTACTCCTGCTGCCAGTTCGGCAGGGGCGTCTTCGCCGACTGTGCATGGAAATGTGGGGAGTGTGGATGGGTCTGTTCATGGACAGGGCTCCAAAGGAGCATCTATTTCGTGTGTCGGTTCGCAACCTCCGATGACTTCTTTGAGCACCAGTGCGGGTGCTGGTGGTGGAAGGGGTAGTTCTATTTTTGGGTCTTCAAGACTGTCTTGTAGACCTTGGGAAAGAGGGGACTTGCTGCGCCGGTTAGCTACTTTTAAGCCCTCGCATTGGTCTGGAAAACCCAAGGTCATCGGTTCATTGGCTTGTGCTAGGAGAGGTTGGGTGAATGTTGATGTAGATAAAGTTTCATGCGAATCATGCGGAGCATACCTTACTTTTACTTTGTTGCCGACGTGGACTCCTGACGAAGTTCAAAATGCTGGGGAAGCCTTTGTCAAACAGCTGGATTCCGGGCACAAAGTTGCTTGTCCCTGGAGAGGAAACAGCTGCCCAGAAAGCTTGGTGCAATTCCCTCCTACTCCTCAGTCTGCCTTAATTGGTGGGTATAAGGATAGATGTGATGGACTTCTGCAATTTCACTCGCTCCCTAAGGTAGCTGCCTCTGTAATTGAGCAAATATGGGTTTCTCGGGGTCCACAGATTGACCGTCTTCTGTCCCAGTCCCAGAATTTTATGGCAGGAGATGTAGATATTAAACCAGAAAGTATACCAGAATTCGAAAGCTCTCGAGATGGAGCAATCTGTTTATATTCTCGTGCACAGAGGCTTATAAGTCTTTGTGGATGGGAACCAAGATGGCTTTTGAATATTCAAGACTATGAGGAACATTCTGCCCAATCAGCTAGAAATGGATATTCTCTTGGGCCTAGCTATGCCCAGGTCCATCTTTCACAGGATCCTGGAGCAAGCAAGAAAGCTATTTCAGCTTCTGCTAGAAAGGATACTGGAAAGAGTAAAGTTTTAGTTAAAGAATCCAGAGGTGATCTCAGGTCACCTTTGCTGGATTGCAGCTTATGTGGTGCTACAGTCAGAATTTTGGATTTCTTAACCGTTCCTCGACCTGCACGTTTTTCTCCGAACAACATTGATATTCCTGACACAAGCAAAAAGATGGGATTGACACGTGGTGCAAGTGCAGCCAGTGGAATTAGTGGTTGGATTGCTGCTGACGATGCAAAAGAACATACTGAAGACCGTGATGAAGTAGCAACAACAACTGAGGGGAATTTGATTCCAAACGCAGATGTTGATTTGAATCTTACAATGGCAGGGGGTTTAACTTTTAACCGGTTCGGCAGAGCAGGAATGGCTGATAATATTAATGATGCAGATATGGGCAGAGATCTAATGATTGGGCAGCCACAAGGCAGTGAGGTTGGGGATCGTGCAGCTTCATATGAATCAAGGGGTCCCAGCTCTCGTAAACGGAGTTTGGAAAAAGGAGGCAGCTCTGTTGATAGGCCACATTTAAGGACGCAGCAGGCTGATAGTGTTGAAGGAACTGTCATTGATCGTGATGGTGATGAAGTTACAGATGGTAGACAAGATTCAGCTGGACCTTCAAAACGAGCCCGCGATTCAGATTTTGTTGATACATACTGTTCATCTGGTGCCGGTCCCAGTCATTCGATGGGTCTTGAAATTTATACTGAGGGTAATAGAGGTGCTTCATTTCCACAAGGAAGTGACCAATACGTTGGAATCCATTCGACTAGGGATTCAGCACGTGCATCTTCAGTCATTGCAATGGATACAATTGGTCACAGTTCAGATGATGACTCTATGGCAAGTGTTGAAAATCATCCGGGAGATATTGATGATATTCATTTCCCCTCATCTAGTACATATGGAAATCTGGACATGAATGAGACATCAGAAGTGAATTATAGTAATCAAGCTCAACAGAGCATTGGTTTTCAACCAGTTGCTGATGTAGTTCCTGAGGAAATGGGTGTTAGTAGTACTAATGATGGGGAAGAAATCTTCAACGCTGAAACTTTGACTGCTCAGGCCCGGGATGGGTTTAGCTTTGGGATGAGTGGAGGGAGTGTTGGAATGTGTGCTAGTCATGAAGCTGAGATTCATGGGGCTGATGTATCTGTTCATAGAGCAGATAGTGTAGTTGGTGATGTGGAACCCAGAACAGAAGATGCTGAGAATCAGGGCCAGACAGGCGAATCTGCACCAGATCCTGGACTAATGGATGAAATTGTCCCTGATGAAATAAATAGGGAAGATCCTCAAGGTGATAGCCAGGAGATGCTATCTCGATCTGTAGGGAGGGCTGATAGTGGCTCAAAGATTGATGGTTCTACTAAGGCTGAATCTGTGGAGAGTGGTGAAAAAATTAGTCAAAAGTTAGAGAACAGTGCCCGCCCTTCTCTTTCATGCAATGCTAATGTATACTCTAATTATGGAACAACCAAGAAAGTGGTAAAAAATGCTGGCAAGTCTTCATTTACAAATAATTGTGCATACCAAGAATCAGAGTATGCAGTTGCCAATGGAATAGGACCTCCAAAAGGCGAGAGCAATTATGAAGAACCTATGGAGTTTGATCCAATTGGCCATCACAACCAGTTCTGCCCCTGGGTCAATGGGAATGTTGCTGCTGCTGGCAGTAGTAGCTGTGGCCCCGACACCAATGCTGATGTTGTTGCTCTTTGTGGGTGGCAGCTGACCTTAGATGCCCTTGATGCTTTGCGTTCCCTGGGGCATGTTGGAATTCAGACATTAGAGTCTGAGTCAGCAGCATCGCAATACAAGGATGATCACCGAAATCCTGGCAAGAAACTCCTTCGACACCATTCTATGAGTCGAAGCCATGGGCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Laminin_G_3

Protein Analysis

958

Amino Acids

101.79

Weight (kDa)

4.99

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC PF07967 85 - 209 5.1e-36 NuBaID N-terminal domain (aka zf-C3HC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 809
AasI GACNNNNNNGTC 1 cut(s) 2776
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 1649
AccB7I CCANNNNNTGG 1 cut(s) 2231
AccI GTMKAC 4 cut(s) 250, 745, 1579, 2442
AccII CGCG 1 cut(s) 1614
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 4 cut(s) 194, 399, 1612, 2413
AclWI GGATC 7 cut(s) 32, 929, 942, 1428, 2222, 2270, 2591
AcoI YGGCCR 1 cut(s) 2605
AcsI RAATTY 6 cut(s) 706, 752, 1071, 1264, 1680, 2763
AcuI CTGAAG 2 cut(s) 1248, 1758
AcvI CACGTG 2 cut(s) 1163, 1766
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 1166
AfaI GTAC 2 cut(s) 1882, 2002
AfiI CCNNNNNNNGG 5 cut(s) 306, 515, 2058, 2231, 2561
AflIII ACRYGT 1 cut(s) 1160
AgeI ACCGGT 1 cut(s) 1326
AjiI CACGTC 1 cut(s) 432
AjnI CCWGG 8 cut(s) 509, 915, 937, 2230, 2292, 2627, 2748, 2821
AjuI GAANNNNNNNTTGG 2 cut(s) 1177, 1209
Alw21I GWGCWC 2 cut(s) 188, 799
Alw26I GTCTC 1 cut(s) 1901
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 7 cut(s) 32, 929, 942, 1428, 2222, 2270, 2591
AlwNI CAGNNNCTG 3 cut(s) 968, 1967, 2231
Ama87I CYCGRG 3 cut(s) 666, 765, 2052
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 6 cut(s) 902, 1499, 2049, 2203, 2605, 2671
ApaLI GTGCAC 1 cut(s) 795
ApoI RAATTY 6 cut(s) 706, 752, 1071, 1264, 1680, 2763
AseI ATTAAT 1 cut(s) 1359
AsiGI ACCGGT 1 cut(s) 1326
Asp700I GAANNNNTTC 1 cut(s) 1744
AspLEI GCGC 1 cut(s) 279
AsuC2I CCSGG 4 cut(s) 490, 1845, 2053, 2054
AsuHPI GGTGA 8 cut(s) 373, 1023, 1031, 1571, 2177, 2297, 2390, 2804
AsuII TTCGAA 1 cut(s) 756
AvaI CYCGRG 3 cut(s) 666, 765, 2052
AvaII GGWCC 7 cut(s) 30, 671, 919, 1448, 1595, 1655, 2552
AxyI CCTNAGG 2 cut(s) 627, 1980
BaeGI GKGCMC 3 cut(s) 495, 799, 2413
BalI TGGCCA 1 cut(s) 2607
BamHI GGATCC 1 cut(s) 934
BanI GGYRCC 1 cut(s) 1649
BanII GRGCYC 2 cut(s) 131, 1612
BauI CACGAG 1 cut(s) 792
BbrPI CACGTG 2 cut(s) 1163, 1766
BbsI GAAGAC 5 cut(s) 63, 225, 680, 1236, 2484
Bbv12I GWGCWC 2 cut(s) 188, 799
BcgI CGANNNNNNTGC 4 cut(s) 129, 163, 2666, 2700
BciT130I CCWGG 8 cut(s) 511, 917, 939, 2232, 2294, 2629, 2750, 2823
BciVI GTATCC 2 cut(s) 973, 1783
BclI TGATCA 1 cut(s) 2809
BcnI CCSGG 4 cut(s) 490, 1845, 2053, 2054
BcoDI GTCTC 1 cut(s) 1901
BfaI CTAG 7 cut(s) 348, 882, 906, 972, 1752, 1878, 2103
BfmI CTRYAG 2 cut(s) 1062, 2313
BfuAI ACCTGC 1 cut(s) 1108
BfuI GTATCC 2 cut(s) 973, 1783
BglI GCCNNNNNGGC 2 cut(s) 59, 2211
BglII AGATCT 1 cut(s) 1381
BmcAI AGTACT 1 cut(s) 2002
Bme18I GGWCC 7 cut(s) 30, 671, 919, 1448, 1595, 1655, 2552
BmeT110I CYCGRG 3 cut(s) 666, 765, 2052
BmgBI CACGTC 1 cut(s) 432
BmrI ACTGGG 2 cut(s) 691, 1653
BmsI GCATC 9 cut(s) 149, 1201, 1354, 1778, 2179, 2289, 2716, 2725, 2801
BmuI ACTGGG 2 cut(s) 691, 1653
BpiI GAAGAC 5 cut(s) 63, 225, 680, 1236, 2484
BplI GAGNNNNNCTC 2 cut(s) 1008, 1040
BpmI CTGGAG 2 cut(s) 532, 960
Bpu10I CCTNAGC 1 cut(s) 2046
Bpu14I TTCGAA 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 2265
BpuMI CCSGG 4 cut(s) 490, 1845, 2053, 2054
BsaAI YACGTR 2 cut(s) 1163, 1766
BsaBI GATNNNNATC 1 cut(s) 1293
BsaHI GRCGYC 1 cut(s) 68
BsaWI WCCGGW 2 cut(s) 23, 1326
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 2073, 2103
Bsc4I CCNNNNNNNGG 5 cut(s) 306, 515, 2058, 2231, 2561
Bse118I RCCGGY 3 cut(s) 279, 1326, 1652
Bse1I ACTGG 8 cut(s) 54, 189, 697, 988, 1179, 1659, 1961, 2617
Bse21I CCTNAGG 2 cut(s) 627, 1980
Bse3DI GCAATG 3 cut(s) 1779, 1791, 2437
Bse8I GATNNNNATC 1 cut(s) 1293
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 8 cut(s) 511, 917, 939, 2232, 2294, 2629, 2750, 2823
BseGI GGATG 7 cut(s) 112, 827, 1840, 2062, 2079, 2248, 2812
BseJI GATNNNNATC 1 cut(s) 1293
BseLI CCNNNNNNNGG 5 cut(s) 306, 515, 2058, 2231, 2561
BseMI GCAATG 3 cut(s) 1779, 1791, 2437
BseMII CTCAG 9 cut(s) 575, 1039, 1248, 1680, 1971, 2060, 2106, 2184, 2772
BseNI ACTGG 8 cut(s) 54, 189, 697, 988, 1179, 1659, 1961, 2617
BseRI GAGGAG 1 cut(s) 549
BseSI GKGCMC 3 cut(s) 495, 799, 2413
BseYI CCCAGC 2 cut(s) 458, 1451
BsgI GTGCAG 4 cut(s) 1086, 1194, 1446, 2205
Bsh1236I CGCG 1 cut(s) 1614
BshFI GGCC 6 cut(s) 904, 1501, 2051, 2205, 2607, 2673
BshNI GGYRCC 1 cut(s) 1649
BshTI ACCGGT 1 cut(s) 1326
BsiHKAI GWGCWC 2 cut(s) 188, 799
BsiHKCI CYCGRG 3 cut(s) 666, 765, 2052
BsiSI CCGG 7 cut(s) 24, 280, 489, 1327, 1653, 1844, 2053
BslFI GGGAC 8 cut(s) 43, 281, 492, 679, 685, 1434, 1641, 2237
BslI CCNNNNNNNGG 5 cut(s) 306, 515, 2058, 2231, 2561
BsmAI GTCTC 1 cut(s) 1901
BsmFI GGGAC 8 cut(s) 43, 281, 492, 679, 685, 1434, 1641, 2237
BsnI GGCC 6 cut(s) 904, 1501, 2051, 2205, 2607, 2673
BsoBI CYCGRG 3 cut(s) 666, 765, 2052
Bsp119I TTCGAA 1 cut(s) 756
Bsp1286I GDGCHC 6 cut(s) 131, 188, 495, 799, 1612, 2413
Bsp13I TCCGGA 1 cut(s) 23
Bsp19I CCATGG 1 cut(s) 2863
BspACI CCGC 4 cut(s) 194, 399, 1612, 2413
BspANI GGCC 6 cut(s) 904, 1501, 2051, 2205, 2607, 2673
BspCNI CTCAG 9 cut(s) 574, 1038, 1249, 1681, 1972, 2059, 2107, 2185, 2773
BspEI TCCGGA 1 cut(s) 23
BspFNI CGCG 1 cut(s) 1614
BspHI TCATGA 1 cut(s) 2107
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 7 cut(s) 32, 929, 942, 1428, 2222, 2270, 2591
BspT104I TTCGAA 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 1649
BsrDI GCAATG 3 cut(s) 1779, 1791, 2437
BsrFI RCCGGY 3 cut(s) 279, 1326, 1652
BsrI ACTGG 8 cut(s) 54, 189, 697, 988, 1179, 1659, 1961, 2617
BssAI RCCGGY 3 cut(s) 279, 1326, 1652
BssNAI GTATAC 2 cut(s) 746, 2443
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 792
BssT1I CCWWGG 3 cut(s) 254, 321, 2863
Bst1107I GTATAC 2 cut(s) 746, 2443
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 8 cut(s) 511, 917, 939, 2232, 2294, 2629, 2750, 2823
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 2 cut(s) 1163, 1766
BstBI TTCGAA 1 cut(s) 756
BstC8I GCNNGC 6 cut(s) 946, 1521, 1612, 2413, 2485, 2656
BstDSI CCRYGG 1 cut(s) 2863
BstEII GGTNACC 1 cut(s) 1029
BstENI CCTNNNNNAGG 1 cut(s) 2559
BstF5I GGATG 7 cut(s) 112, 827, 1840, 2062, 2079, 2248, 2812
BstFNI CGCG 1 cut(s) 1614
BstHHI GCGC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 1901
BstNI CCWGG 8 cut(s) 511, 917, 939, 2232, 2294, 2629, 2750, 2823
BstNSI RCATGY 1 cut(s) 2759
BstPI GGTNACC 1 cut(s) 1029
BstSFI CTRYAG 2 cut(s) 1062, 2313
BstSLI GKGCMC 3 cut(s) 495, 799, 2413
BstUI CGCG 1 cut(s) 1614
BstV2I GAAGAC 5 cut(s) 63, 225, 680, 1236, 2484
BstX2I RGATCY 4 cut(s) 934, 1381, 2227, 2275
BstXI CCANNNNNNTGG 2 cut(s) 1736, 2470
BstYI RGATCY 4 cut(s) 934, 1381, 2227, 2275
BstZ17I GTATAC 2 cut(s) 746, 2443
Bsu36I CCTNAGG 2 cut(s) 627, 1980
BsuI GTATCC 2 cut(s) 973, 1783
BsuRI GGCC 6 cut(s) 904, 1501, 2051, 2205, 2607, 2673
BtgI CCRYGG 1 cut(s) 2863
BtgZI GCGATG 1 cut(s) 2778
BtrI CACGTC 1 cut(s) 432
BtsCI GGATG 7 cut(s) 112, 827, 1840, 2062, 2079, 2248, 2812
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 4 cut(s) 196, 1186, 1414, 2413
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 6 cut(s) 946, 1521, 1612, 2413, 2485, 2656
CaiI CAGNNNCTG 3 cut(s) 968, 1967, 2231
CciI TCATGA 1 cut(s) 2107
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 3 cut(s) 279, 1326, 1652
Cfr9I CCCGGG 1 cut(s) 2052
CseI GACGC 2 cut(s) 57, 1522
Csp6I GTAC 2 cut(s) 1881, 2001
CspAI ACCGGT 1 cut(s) 1326
CviQI GTAC 2 cut(s) 1881, 2001
DraIII CACNNNGTG 1 cut(s) 1166
DrdI GACNNNNNNGTC 1 cut(s) 2776
DseDI GACNNNNNNGTC 1 cut(s) 2776
EaeI YGGCCR 1 cut(s) 2605
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 254, 321, 2863
Eco24I GRGCYC 2 cut(s) 131, 1612
Eco47I GGWCC 7 cut(s) 30, 671, 919, 1448, 1595, 1655, 2552
Eco57I CTGAAG 2 cut(s) 1248, 1758
Eco72I CACGTG 2 cut(s) 1163, 1766
Eco81I CCTNAGG 2 cut(s) 627, 1980
Eco88I CYCGRG 3 cut(s) 666, 765, 2052
Eco91I GGTNACC 1 cut(s) 1029
EcoNI CCTNNNNNAGG 1 cut(s) 2559
EcoO109I RGGNCCY 2 cut(s) 1448, 2552
EcoO65I GGTNACC 1 cut(s) 1029
EcoRI GAATTC 2 cut(s) 752, 2763
EcoRII CCWGG 8 cut(s) 509, 915, 937, 2230, 2292, 2627, 2748, 2821
EcoT14I CCWWGG 3 cut(s) 254, 321, 2863
EcoT38I GRGCYC 2 cut(s) 131, 1612
ErhI CCWWGG 3 cut(s) 254, 321, 2863
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 8 cut(s) 43, 281, 492, 679, 685, 1434, 1641, 2237
FauI CCCGC 3 cut(s) 187, 1619, 2420
FauNDI CATATG 2 cut(s) 1435, 1885
FbaI TGATCA 1 cut(s) 2809
FblI GTMKAC 4 cut(s) 250, 745, 1579, 2442
FokI GGATG 7 cut(s) 119, 834, 1827, 2069, 2086, 2255, 2819
FriOI GRGCYC 2 cut(s) 131, 1612
FspBI CTAG 7 cut(s) 348, 882, 906, 972, 1752, 1878, 2103
GlaI GCGC 1 cut(s) 278
GsaI CCCAGC 2 cut(s) 462, 1455
GsuI CTGGAG 2 cut(s) 532, 960
HaeIII GGCC 6 cut(s) 904, 1501, 2051, 2205, 2607, 2673
HapII CCGG 7 cut(s) 24, 280, 489, 1327, 1653, 1844, 2053
HgaI GACGC 2 cut(s) 57, 1522
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 535
HpaII CCGG 7 cut(s) 24, 280, 489, 1327, 1653, 1844, 2053
HphI GGTGA 8 cut(s) 373, 1023, 1031, 1571, 2177, 2297, 2390, 2804
Hpy166II GTNNAC 8 cut(s) 251, 435, 674, 746, 797, 1463, 1580, 2443
Hpy188I TCNGA 9 cut(s) 171, 1070, 1116, 1621, 1810, 1915, 2527, 2769, 2782
Hpy8I GTNNAC 8 cut(s) 251, 435, 674, 746, 797, 1463, 1580, 2443
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 5 cut(s) 204, 1529, 1608, 2427, 2846
HpyCH4IV ACGT 5 cut(s) 431, 1105, 1162, 1734, 1765
HpySE526I ACGT 5 cut(s) 431, 1105, 1162, 1734, 1765
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 1 cut(s) 277
KflI GGGWCCC 1 cut(s) 1448
Kpn2I TCCGGA 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 2809
LmnI GCTCC 7 cut(s) 26, 134, 137, 401, 627, 773, 941
LweI GCATC 9 cut(s) 149, 1201, 1354, 1778, 2179, 2289, 2716, 2725, 2801
MaeI CTAG 7 cut(s) 348, 882, 906, 972, 1752, 1878, 2103
MaeII ACGT 5 cut(s) 431, 1105, 1162, 1734, 1765
MaeIII GTNAC 4 cut(s) 1029, 1567, 1724, 1799
MfeI CAATTG 2 cut(s) 1794, 2601
MflI RGATCY 4 cut(s) 934, 1381, 2227, 2275
MhlI GDGCHC 6 cut(s) 131, 188, 495, 799, 1612, 2413
MlsI TGGCCA 1 cut(s) 2607
MluNI TGGCCA 1 cut(s) 2607
MlyI GAGTC 5 cut(s) 430, 1811, 2786, 2792, 2863
MmeI TCCRAC 4 cut(s) 1175, 1717, 2071, 2740
Mox20I TGGCCA 1 cut(s) 2607
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 1744
MscI TGGCCA 1 cut(s) 2607
MseI TTAA 9 cut(s) 294, 572, 732, 1005, 1085, 1316, 1323, 1359, 1508
MslI CAYNNNNRTG 2 cut(s) 90, 1784
Msp20I TGGCCA 1 cut(s) 2607
MspA1I CMGCKG 4 cut(s) 481, 525, 1592, 2716
MspI CCGG 7 cut(s) 24, 280, 489, 1327, 1653, 1844, 2053
MunI CAATTG 2 cut(s) 1794, 2601
MvaI CCWGG 8 cut(s) 511, 917, 939, 2232, 2294, 2629, 2750, 2823
MvnI CGCG 1 cut(s) 1614
NciI CCSGG 4 cut(s) 490, 1845, 2053, 2054
NcoI CCATGG 1 cut(s) 2863
NdeI CATATG 2 cut(s) 1435, 1885
NmuCI GTSAC 3 cut(s) 1029, 1724, 1799
NspI RCATGY 1 cut(s) 2759
NspV TTCGAA 1 cut(s) 756
PaeR7I CTCGAG 1 cut(s) 765
PagI TCATGA 1 cut(s) 2107
PasI CCCWGGG 2 cut(s) 2628, 2749
PcsI WCGNNNNNNNCGW 3 cut(s) 65, 167, 1102
PdmI GAANNNNTTC 1 cut(s) 1744
PflMI CCANNNNNTGG 1 cut(s) 2231
PfoI TCCNGGA 3 cut(s) 937, 1843, 2230
PinAI ACCGGT 1 cut(s) 1326
PleI GAGTC 5 cut(s) 430, 1811, 2785, 2791, 2862
PmaCI CACGTG 2 cut(s) 1163, 1766
PmlI CACGTG 2 cut(s) 1163, 1766
PpsI GAGTC 5 cut(s) 430, 1811, 2785, 2791, 2862
Ppu21I YACGTR 2 cut(s) 1163, 1766
PpuMI RGGWCCY 2 cut(s) 1448, 2552
PshBI ATTAAT 1 cut(s) 1359
PsiI TTATAA 1 cut(s) 809
Psp5II RGGWCCY 2 cut(s) 1448, 2552
Psp6I CCWGG 8 cut(s) 509, 915, 937, 2230, 2292, 2627, 2748, 2821
PspCI CACGTG 2 cut(s) 1163, 1766
PspEI GGTNACC 1 cut(s) 1029
PspFI CCCAGC 2 cut(s) 458, 1451
PspGI CCWGG 8 cut(s) 509, 915, 937, 2230, 2292, 2627, 2748, 2821
PspPPI RGGWCCY 2 cut(s) 1448, 2552
PstNI CAGNNNCTG 3 cut(s) 968, 1967, 2231
PsuI RGATCY 4 cut(s) 934, 1381, 2227, 2275
PvuII CAGCTG 4 cut(s) 481, 525, 1592, 2716
RsaI GTAC 2 cut(s) 1882, 2002
RsaNI GTAC 2 cut(s) 1881, 2001
RseI CAYNNNNRTG 2 cut(s) 90, 1784
SaqAI TTAA 9 cut(s) 294, 572, 732, 1005, 1085, 1316, 1323, 1359, 1508
ScaI AGTACT 1 cut(s) 2002
SchI GAGTC 5 cut(s) 430, 1811, 2786, 2792, 2863
SduI GDGCHC 6 cut(s) 131, 188, 495, 799, 1612, 2413
SfaNI GCATC 9 cut(s) 149, 1201, 1354, 1778, 2179, 2289, 2716, 2725, 2801
SfcI CTRYAG 2 cut(s) 1062, 2313
Sfr274I CTCGAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 756
SinI GGWCC 7 cut(s) 30, 671, 919, 1448, 1595, 1655, 2552
SlaI CTCGAG 1 cut(s) 765
SmaI CCCGGG 1 cut(s) 2054
SmiMI CAYNNNNRTG 2 cut(s) 90, 1784
SmlI CTYRAG 2 cut(s) 765, 2280
SmoI CTYRAG 2 cut(s) 765, 2280
SsiI CCGC 4 cut(s) 194, 399, 1612, 2413
SspI AATATT 3 cut(s) 847, 1357, 2873
SspMI CTAG 7 cut(s) 348, 882, 906, 972, 1752, 1878, 2103
StyI CCWWGG 3 cut(s) 254, 321, 2863
TaiI ACGT 5 cut(s) 434, 1108, 1165, 1737, 1768
TaqI TCGA 8 cut(s) 756, 766, 1096, 1667, 1748, 2308, 2839, 2857
TatI WGTACW 2 cut(s) 1880, 2000
Tru1I TTAA 9 cut(s) 294, 572, 732, 1005, 1085, 1316, 1323, 1359, 1508
Tru9I TTAA 9 cut(s) 294, 572, 732, 1005, 1085, 1316, 1323, 1359, 1508
TscAI CASTG 4 cut(s) 196, 1186, 1414, 2413
TseFI GTSAC 3 cut(s) 1029, 1724, 1799
Tsp45I GTSAC 3 cut(s) 1029, 1724, 1799
TspGWI ACGGA 1 cut(s) 1480
TspMI CCCGGG 1 cut(s) 2052
TspRI CASTG 4 cut(s) 196, 1186, 1414, 2413
Van91I CCANNNNNTGG 1 cut(s) 2231
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 7 cut(s) 30, 671, 919, 1448, 1595, 1655, 2552
VspI ATTAAT 1 cut(s) 1359
XagI CCTNNNNNAGG 1 cut(s) 2559
XapI RAATTY 6 cut(s) 706, 752, 1071, 1264, 1680, 2763
XceI RCATGY 1 cut(s) 2759
XcmI CCANNNNNNNNNTGG 1 cut(s) 1666
XhoI CTCGAG 1 cut(s) 765
XmaI CCCGGG 1 cut(s) 2052
XmiI GTMKAC 4 cut(s) 250, 745, 1579, 2442
XmnI GAANNNNTTC 1 cut(s) 1744
XspI CTAG 7 cut(s) 348, 882, 906, 972, 1752, 1878, 2103
ZrmI AGTACT 1 cut(s) 2002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.