Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Reverse (-)

23947908 .. 23950619

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAACAAGTAGACGACTCCCAATCCAATTCAGAGAATCCTGAAGCGAGAAACTCGACTCTCAACAGTACATCGAGTAGTAGAATTCCAATGTCAGATGTCGCCATTTTTAAATACTGCCTGGCGGGTTTAACTGAGAAGAGTCTTCTGCTCAAGGAGATTGCAACCTCTGCTTCTAATGAACAACTTCAGGATTTCGCCCATCAGGACTTTGAGCTACTAAAGAGAATTGCTGGTTGCAAAGAATATCTGGCCCAAGAGAACTTTGAAAAGATGTGGTGTTGGTTATATCCTGTCGCTTTTACATTATCAAAAGATTGGATAAATACAATGTGGAGTTCAACATCACCCAAGTGGATAGAAGGATTCATTACTAAGGAAGAAGCTGAATCTTCTCTTCAAGCTTCAAGGGGTTTCCAGAAACCTGGTACATTTGTTCTCCGATTTCCAACATCAAGGAGTTGGCCTCATCCAGATGCTGGAAGCTTAGTTGTAACCTATCTTGGCAGCAAGTGCACCATTCACCACAAGCTTATTTCCCTGGATAATATTGTTAGTTCTGAGGAAAAGAATGCAAAGCCCCTGCAAGACATGCTTCTTGCGGAGCCCGAACTCTCTCAATTGGGAAGGATAATAAGAAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Laminin_G_3

Protein Analysis

215

Amino Acids

24.31

Weight (kDa)

5.59

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	125, 602
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	63, 173
AfaI	GTAC	2 cut(s)	70, 430
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	269, 342, 401, 408
AjnI	CCWGG	3 cut(s)	120, 424, 540
AleI	CACNNNNGTG	1 cut(s)	352
AluBI	AGCT	5 cut(s)	217, 386, 404, 486, 532
AluI	AGCT	5 cut(s)	217, 386, 404, 486, 532
Alw21I	GWGCWC	1 cut(s)	518
Alw44I	GTGCAC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	252, 464
ApaLI	GTGCAC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	339, 515
BaeGI	GKGCMC	1 cut(s)	518
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanII	GRGCYC	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	3 cut(s)	122, 426, 542
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
Bme1390I	CCNGG	3 cut(s)	122, 426, 542
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	3 cut(s)	122, 426, 542
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
BseBI	CCWGG	3 cut(s)	122, 426, 542
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	2 cut(s)	126, 552
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	519
BshFI	GGCC	2 cut(s)	254, 466
BsiHKAI	GWGCWC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	254, 466
Bsp1286I	GDGCHC	2 cut(s)	518, 609
BspACI	CCGC	2 cut(s)	125, 602
BspANI	GGCC	2 cut(s)	254, 466
BspCNI	CTCAG	2 cut(s)	127, 553
BspLI	GGNNCC	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	540
Bst2UI	CCWGG	3 cut(s)	122, 426, 542
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	134, 402
BstAPI	GCANNNNNTGC	3 cut(s)	170, 513, 592
BstDEI	CTNAG	4 cut(s)	135, 375, 487, 561
BstF5I	GGATG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 513, 592
BstNI	CCWGG	3 cut(s)	122, 426, 542
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	3 cut(s)	120, 424, 540
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	254, 466
BtsCI	GGATG	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	69, 429
CviAII	CATG	1 cut(s)	592
CviJI	RGCY	9 cut(s)	217, 254, 386, 404, 466, 486, 532, 580, 607
CviKI_1	RGCY	9 cut(s)	217, 254, 386, 404, 466, 486, 532, 580, 607
CviQI	GTAC	2 cut(s)	69, 429
DdeI	CTNAG	4 cut(s)	135, 375, 487, 561
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	134, 402
EarI	CTCTTC	2 cut(s)	134, 402
Eco24I	GRGCYC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	63, 173
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	3 cut(s)	120, 424, 540
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	1 cut(s)	595
FaiI	YATR	2 cut(s)	289, 593
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	1 cut(s)	591
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	1 cut(s)	508
GluI	GCNGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	254, 466
Hin1II	CATG	1 cut(s)	595
HindIII	AAGCTT	3 cut(s)	402, 484, 530
HinfI	GANTC	6 cut(s)	17, 37, 58, 142, 366, 389
HphI	GGTGA	2 cut(s)	339, 515
Hpy166II	GTNNAC	2 cut(s)	13, 516
Hpy188I	TCNGA	4 cut(s)	34, 97, 443, 562
Hpy188III	TCNNGA	5 cut(s)	41, 191, 206, 418, 473
Hpy8I	GTNNAC	2 cut(s)	13, 516
HpyAV	CCTTC	2 cut(s)	356, 621
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	164, 240, 516, 575, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 513, 592
HpyF3I	CTNAG	4 cut(s)	135, 375, 487, 561
Hsp92II	CATG	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	493, 641
MboII	GAAGA	5 cut(s)	137, 151, 384, 389, 392
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	2 cut(s)	518, 609
MluCI	AATT	4 cut(s)	28, 84, 228, 620
MlyI	GAGTC	3 cut(s)	11, 52, 151
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	3 cut(s)	178, 477, 556
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	2 cut(s)	111, 131
MslI	CAYNNNNRTG	2 cut(s)	352, 474
MspR9I	CCNGG	3 cut(s)	122, 426, 542
MunI	CAATTG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	3 cut(s)	122, 426, 542
MwoI	GCNNNNNNNGC	3 cut(s)	170, 513, 592
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	352
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	37, 366, 389
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	3 cut(s)	11, 52, 150
PpsI	GAGTC	3 cut(s)	11, 52, 150
Psp6I	CCWGG	3 cut(s)	120, 424, 540
PspGI	CCWGG	3 cut(s)	120, 424, 540
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	70, 430
RsaNI	GTAC	2 cut(s)	69, 429
RseI	CAYNNNNRTG	2 cut(s)	352, 474
SaqAI	TTAA	2 cut(s)	111, 131
SatI	GCNGC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	3 cut(s)	11, 52, 151
ScrFI	CCNGG	3 cut(s)	122, 426, 542
SduI	GDGCHC	2 cut(s)	518, 609
SetI	ASST	8 cut(s)	170, 219, 388, 406, 427, 488, 500, 534
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	2 cut(s)	352, 474
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	28, 84, 228, 620
SsiI	CCGC	2 cut(s)	125, 602
SspI	AATATT	1 cut(s)	550
StyD4I	CCNGG	3 cut(s)	120, 424, 540
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	56, 74
TasI	AATT	4 cut(s)	28, 84, 228, 620
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	37, 366, 389
Tru1I	TTAA	2 cut(s)	111, 131
Tru9I	TTAA	2 cut(s)	111, 131
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	2 cut(s)	195, 358
Van91I	CCANNNNNTGG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	84
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.