Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006090.1

Orthogroup ID

OG0004620

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 725

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggaacaagtagacgactcccaatccaattcagagaatcctgaagcgagaaactcgactcgcaacagtacatcgagtagtagaattccaatgtcagatgtcgccatttttaaatactgcctggcgggtttaactgagaagagtcttctgctcaaggagattgcaacctctgcttctaatgaacaacttcaggatttcgcccatcaggtttcgctgtattcaggatgctcacaccataggcaccaaataataatggcaaaggcattggttgaggaaggaactaaagcttggaagttgatctcacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Laminin_G_3

Protein Analysis

102

Amino Acids

11.33

Weight (kDa)

6.04

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17040 AT1G17040 AT1G17040 AT1G78540 AT1G78540 AT1G78540
fragaria_vesca	FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370 FvH4_3g17370
malus_domestica	MD11G1273300.v1.1
prunus_persica	Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1 Prupe.4G154100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028891
rosa_laevigata	RLG00000033126
rosa_multiflora	Rmu_co8282035.1_g000001 Rmu_co8459989.1_g000001 Rmu_sc0005178.1_g000020 Rmu_sc0006090.1_g000001
rosa_rugosa	Rorug05G0111300
rosa_samantha	Rh5AG203600 Rh5BG201900 Rh5CG222700 Rh5DG205300
rosa_wichuraiana	Rw5G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	63, 173
AfaI	GTAC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	240
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	69
CviJI	RGCY	1 cut(s)	287
CviKI_1	RGCY	1 cut(s)	287
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	63, 173
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	120
FaiI	YATR	1 cut(s)	237
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	12
FokI	GGATG	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	4 cut(s)	17, 37, 58, 142
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	34, 97
Hpy188III	TCNNGA	3 cut(s)	41, 191, 222
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	297
LpnPI	CCDG	6 cut(s)	54, 107, 134, 176, 191, 207
LweI	GCATC	1 cut(s)	215
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	2 cut(s)	137, 151
MluCI	AATT	2 cut(s)	28, 84
MlyI	GAGTC	3 cut(s)	11, 52, 151
MnlI	CCTC	2 cut(s)	178, 265
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	2 cut(s)	111, 131
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	1 cut(s)	297
NlaIV	GGNNCC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	37
PleI	GAGTC	3 cut(s)	11, 52, 150
PpsI	GAGTC	3 cut(s)	11, 52, 150
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	111, 131
Sau3AI	GATC	1 cut(s)	297
SchI	GAGTC	3 cut(s)	11, 52, 151
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	3 cut(s)	170, 210, 289
SfaNI	GCATC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	28, 84
SsiI	CCGC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	56, 74
TasI	AATT	2 cut(s)	28, 84
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	111, 131
Tru9I	TTAA	2 cut(s)	111, 131
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.