Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285897.1

Orthogroup ID

OG0008814

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 336

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgagggatggagatatcggcggcgggactgagacggacgtgtattgttttggggtggtgttgatggagctgttgacggggcggcccgggacggcggagacggtggtgtgggtgaggaggatggtgagggaggcgcgtggggtggacgcgctggatgagaggttgagggaaggtggggatttggagagggagatggtggagagtctccgagttgggtacttgtgtacggcggagtcacctgggaaaaggcccagcatgcagcaggtgctgggtttgctcaaagacctacatcccagttccactgccactctgggctttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

107

Amino Acids

11.71

Weight (kDa)

4.97

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45800 AT5G45800
fragaria_vesca	FvH4_3g07560 FvH4_3g07560
malus_domestica	MD05G1298700.v1.1 MD10G1278000.v1.1
prunus_persica	Prupe.4G063700_v2.0.a1
pyrus_communis	pycom05g27650 pycom10g23200
rosa_chinensis	RchiOBHm_Chr5g0011151
rosa_laevigata	RLG00000031815
rosa_multiflora	Rmu_co8285897.1_g000001 Rmu_sc0002990.1_g000016 Rmu_sc0003242.1_g000021 Rmu_sc0030140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065240
rosa_rugosa	Rorug04G0455400
rosa_samantha	Rh5AG087700 Rh5BG082400 Rh5CG095400 Rh5DG082200
rosa_wichuraiana	Rw0G000210 Rw5G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
AccII	CGCG	2 cut(s)	136, 149
AciI	CCGC	5 cut(s)	21, 24, 82, 95, 230
AfaI	GTAC	2 cut(s)	218, 226
AflIII	ACRYGT	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	3 cut(s)	26, 92, 209
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	83, 248
ApeKI	GCWGC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	136, 151
AspS9I	GGNCC	2 cut(s)	84, 249
AsuC2I	CCSGG	2 cut(s)	87, 88
AsuHPI	GGTGA	3 cut(s)	124, 136, 228
AvaI	CYCGRG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	2, 58, 115, 187
BceAI	ACGGC	2 cut(s)	108, 243
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	2 cut(s)	87, 88
BcoDI	GTCTC	3 cut(s)	26, 92, 209
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	3 cut(s)	22, 83, 260
BlsI	GCNGC	3 cut(s)	23, 84, 261
Bme1390I	CCNGG	3 cut(s)	87, 88, 240
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	84, 249
BmrFI	CCNGG	3 cut(s)	87, 88, 240
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	87, 88
BsaJI	CCNNGG	2 cut(s)	86, 239
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	86, 239
BseGI	GGATG	4 cut(s)	13, 126, 160, 289
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	2 cut(s)	251, 268
Bsh1236I	CGCG	2 cut(s)	136, 149
BshFI	GGCC	2 cut(s)	85, 250
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	40, 103
BsmAI	GTCTC	3 cut(s)	26, 92, 209
BsmBI	CGTCTC	2 cut(s)	26, 92
BsmFI	GGGAC	2 cut(s)	40, 103
BsnI	GGCC	2 cut(s)	85, 250
BsoBI	CYCGRG	1 cut(s)	86
BspACI	CCGC	5 cut(s)	21, 24, 82, 95, 230
BspANI	GGCC	2 cut(s)	85, 250
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	136, 149
BspMI	ACCTGC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	86, 239
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	13, 126, 160, 289
BstFNI	CGCG	2 cut(s)	136, 149
BstHHI	GCGC	2 cut(s)	136, 151
BstMAI	GTCTC	3 cut(s)	26, 92, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 265, 274
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	85, 86, 238
BstUI	CGCG	2 cut(s)	136, 149
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	85, 250
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	13, 126, 160, 289
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	2 cut(s)	136, 151
Cfr13I	GGNCC	2 cut(s)	84, 249
Cfr9I	CCCGGG	1 cut(s)	86
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	217, 225
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	4 cut(s)	70, 85, 250, 315
CviKI_1	RGCY	4 cut(s)	70, 85, 250, 315
CviQI	GTAC	2 cut(s)	217, 225
DdeI	CTNAG	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	110, 245
Eco32I	GATATC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	16
Esp3I	CGTCTC	2 cut(s)	26, 92
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FaqI	GGGAC	2 cut(s)	40, 103
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	22, 83, 260
FokI	GGATG	4 cut(s)	20, 133, 167, 276
Fsp4HI	GCNGC	3 cut(s)	22, 83, 260
GlaI	GCGC	2 cut(s)	135, 150
GluI	GCNGC	3 cut(s)	22, 83, 260
GsaI	CCCAGC	2 cut(s)	255, 272
HaeIII	GGCC	2 cut(s)	85, 250
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	136, 151
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	2 cut(s)	134, 149
HinP1I	GCGC	2 cut(s)	134, 149
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	202, 233
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	3 cut(s)	124, 136, 228
Hpy166II	GTNNAC	3 cut(s)	75, 145, 225
Hpy188I	TCNGA	2 cut(s)	209, 323
Hpy8I	GTNNAC	3 cut(s)	75, 145, 225
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 265, 274
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	2 cut(s)	134, 149
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	100, 137, 225, 248, 252, 254, 265, 296, 307
Lsp1109I	GCAGC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	211, 242
MnlI	CCTC	7 cut(s)	108, 111, 120, 124, 153, 159, 180
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	87, 88, 240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	136, 149
MwoI	GCNNNNNNNGC	3 cut(s)	256, 265, 274
NciI	CCSGG	2 cut(s)	87, 88
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	23, 84, 261
PleI	GAGTC	2 cut(s)	210, 241
PpsI	GAGTC	2 cut(s)	210, 241
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	2 cut(s)	251, 268
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	84, 249
PstNI	CAGNNNCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	218, 226
RsaNI	GTAC	2 cut(s)	217, 225
SatI	GCNGC	3 cut(s)	22, 83, 260
Sau96I	GGNCC	2 cut(s)	84, 249
SchI	GAGTC	2 cut(s)	211, 242
ScrFI	CCNGG	3 cut(s)	87, 88, 240
SetI	ASST	7 cut(s)	42, 72, 164, 175, 241, 267, 288
SmaI	CCCGGG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	259
SsiI	CCGC	5 cut(s)	21, 24, 82, 95, 230
StyD4I	CCNGG	3 cut(s)	85, 86, 238
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	42
TauI	GCSGC	2 cut(s)	24, 85
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	50
TspMI	CCCGGG	1 cut(s)	86
TspRI	CASTG	1 cut(s)	307
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmaI	CCCGGG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.