Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008814

Physical Location & Seq

Genomic Coordinates Reverse (-)

60934028 .. 60935437

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCAAGGTCCCTGAGAAAACAAGCCCTCCGTTAAAACCCAAAACCACTACCTTTCTCGGTTGTTTCAGATTTTCTAGTAGAAAAACCCTCCGATCCCATGACTACAACAACAACAAGATCATTAAGAGTCGCAGCTGGTTTTGTTGGTCAAGGTTTCACTCGAAGAAGGCGGCCGCCACAAAAACGGTGGTGCCCCTCGACATCTCCACCGTATCCGAGAAACAAGCAATCCCGTCCACGTTGGTCAAGTTGGAGCCAAAGTCAAAGCACGGTAAGTTTGAACCCAAAAATGAAGTTCCGGCAGCAACCGACGTCGTGGAGGGCCCAGGTGTTCCAATTCAGCCTCTGATAGTCTCCGAAAAAGCTCCTAATTCTAAACAAAAACCTCCAGAGACAGCCTCCGACATGATCAGCCTCGAAAACAGCACACAGCGCTCAGATGCTTCAAAAGACTACACGTATCAAAAGCGGCGGCTGTCTTTTCGCCGGAAAGTTGAATCTATAAGAACAGCCGCAGCTGGGGGAGCCGGCAGCAGCCAACCCGGCTCACCTATTCACTCCGTCACTCCGAAACGTCCAAGACGAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGGTCTTCAGCTATTCCGTCGTCGGCACGTAAAACGTGGTTGGTGTCAAATGAGCGGACTATGACCACGAAGAGATTGGACCCGCTGGTGGGTATGACTATTATTATGGTCACATTGATTATAATGGTATTATGGGGCCGATTATGCGCCATTCTCTGCACCGCCGCATGGTTCTATCTCCTCCCTCGCTTAACTCAAAATAGTAATTTAACAACAACATCCTCCACCGCCGGCGATGATCATTTGGACTTCAGTTCCGACGAATACAAGAAGAAGGTGGTCTTAGAGGGATTCCTCGAAAGGAATAACCACCGCAATCATGTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

314

Amino Acids

34.49

Weight (kDa)

10.13

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45800 AT5G45800
fragaria_vesca	FvH4_3g07560 FvH4_3g07560
malus_domestica	MD05G1298700.v1.1 MD10G1278000.v1.1
prunus_persica	Prupe.4G063700_v2.0.a1
pyrus_communis	pycom05g27650 pycom10g23200
rosa_chinensis	RchiOBHm_Chr5g0011151
rosa_laevigata	RLG00000031815
rosa_multiflora	Rmu_co8285897.1_g000001 Rmu_sc0002990.1_g000016 Rmu_sc0003242.1_g000021 Rmu_sc0030140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065240
rosa_rugosa	Rorug04G0455400
rosa_samantha	Rh5AG087700 Rh5BG082400 Rh5CG095400 Rh5DG082200
rosa_wichuraiana	Rw0G000210 Rw5G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	670
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	2 cut(s)	3, 174
AcuI	CTGAAG	2 cut(s)	606, 850
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	939
AfeI	AGCGCT	1 cut(s)	437
AfiI	CCNNNNNNNGG	5 cut(s)	522, 587, 703, 704, 783
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	284, 450, 500
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	4 cut(s)	138, 368, 521, 626
AluI	AGCT	4 cut(s)	138, 368, 521, 626
Alw26I	GTCTC	2 cut(s)	361, 389
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	1 cut(s)	349
Aor51HI	AGCGCT	1 cut(s)	437
AoxI	GGCC	4 cut(s)	3, 174, 325, 751
ApaI	GGGCCC	1 cut(s)	329
ApeKI	GCWGC	5 cut(s)	135, 305, 518, 534, 537
AspLEI	GCGC	2 cut(s)	438, 764
AspS9I	GGNCC	5 cut(s)	10, 325, 326, 694, 751
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	543
AvaII	GGWCC	2 cut(s)	10, 694
BaeGI	GKGCMC	2 cut(s)	198, 329
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	5 cut(s)	147, 317, 530, 546, 549
BciT130I	CCWGG	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	2 cut(s)	411, 853
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	361, 389
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	546
Bme1390I	CCNGG	2 cut(s)	330, 546
Bme18I	GGWCC	2 cut(s)	10, 694
BmgT120I	GGNCC	5 cut(s)	10, 325, 326, 694, 751
BmiI	GGNNCC	7 cut(s)	12, 195, 258, 327, 529, 696, 752
BmrFI	CCNGG	2 cut(s)	330, 546
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	546
BsaAI	YACGTR	2 cut(s)	462, 644
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	6, 328
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 248, 278
Bsc4I	CCNNNNNNNGG	5 cut(s)	522, 587, 703, 704, 783
Bse118I	RCCGGY	2 cut(s)	530, 845
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	6, 328
BseGI	GGATG	1 cut(s)	833
BseLI	CCNNNNNNNGG	5 cut(s)	522, 587, 703, 704, 783
BseMII	CTCAG	2 cut(s)	6, 453
BseRI	GAGGAG	8 cut(s)	603, 612, 615, 618, 621, 624, 627, 785
BseSI	GKGCMC	2 cut(s)	198, 329
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	5 cut(s)	147, 317, 530, 546, 549
BseYI	CCCAGC	1 cut(s)	521
BsgI	GTGCAG	1 cut(s)	757
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	5, 176, 327, 753
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	5 cut(s)	302, 490, 531, 546, 846
BslI	CCNNNNNNNGG	5 cut(s)	522, 587, 703, 704, 783
BsmAI	GTCTC	2 cut(s)	361, 389
BsnI	GGCC	4 cut(s)	5, 176, 327, 753
Bsp120I	GGGCCC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	198, 329
Bsp143I	GATC	4 cut(s)	95, 120, 411, 853
BspANI	GGCC	4 cut(s)	5, 176, 327, 753
BspCNI	CTCAG	2 cut(s)	7, 452
BspLI	GGNNCC	7 cut(s)	12, 195, 258, 327, 529, 696, 752
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	670
BsrFI	RCCGGY	2 cut(s)	530, 845
BssAI	RCCGGY	2 cut(s)	530, 845
BssECI	CCNNGG	2 cut(s)	6, 328
BssMI	GATC	4 cut(s)	95, 120, 411, 853
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	190, 214, 275
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	315
BstBAI	YACGTR	2 cut(s)	462, 644
BstC8I	GCNNGC	2 cut(s)	532, 847
BstDEI	CTNAG	3 cut(s)	15, 439, 898
BstF5I	GGATG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	438, 764
BstKTI	GATC	4 cut(s)	98, 123, 414, 856
BstMAI	GTCTC	2 cut(s)	361, 389
BstMBI	GATC	4 cut(s)	95, 120, 411, 853
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 527, 546, 759
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	328, 544
BstSLI	GKGCMC	2 cut(s)	198, 329
BstV1I	GCAGC	5 cut(s)	147, 317, 530, 546, 549
BstV2I	GAAGAC	1 cut(s)	612
BstZI	CGGCCG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	4 cut(s)	5, 176, 327, 753
BtgZI	GCGATG	1 cut(s)	864
BtsCI	GGATG	1 cut(s)	833
Cac8I	GCNNGC	2 cut(s)	532, 847
CaiI	CAGNNNCTG	1 cut(s)	349
CciNI	GCGGCCGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	438, 764
Cfr10I	RCCGGY	2 cut(s)	530, 845
Cfr13I	GGNCC	5 cut(s)	10, 325, 326, 694, 751
Csp6I	GTAC	1 cut(s)	938
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	4 cut(s)	101, 409, 783, 935
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	3 cut(s)	15, 439, 898
DpnI	GATC	4 cut(s)	97, 122, 413, 855
DpnII	GATC	4 cut(s)	95, 120, 411, 853
EaeI	YGGCCR	2 cut(s)	3, 174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
EciI	GGCGGA	1 cut(s)	609
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	10, 694
Eco47III	AGCGCT	1 cut(s)	437
Eco52I	CGGCCG	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	606, 850
EcoO109I	RGGNCCY	2 cut(s)	10, 325
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	104, 412, 786, 938
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FatI	CATG	4 cut(s)	100, 408, 782, 934
FauI	CCCGC	1 cut(s)	705
FbaI	TGATCA	2 cut(s)	411, 853
FokI	GGATG	1 cut(s)	820
FriOI	GRGCYC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	437, 763
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	4 cut(s)	5, 176, 327, 753
HapII	CCGG	5 cut(s)	302, 490, 531, 546, 846
HhaI	GCGC	2 cut(s)	438, 764
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	104, 412, 786, 938
Hin6I	GCGC	2 cut(s)	436, 762
HinP1I	GCGC	2 cut(s)	436, 762
HinfI	GANTC	3 cut(s)	130, 500, 906
HpaII	CCGG	5 cut(s)	302, 490, 531, 546, 846
HphI	GGTGA	1 cut(s)	543
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	9 cut(s)	71, 95, 220, 351, 361, 406, 442, 573, 874
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	5 cut(s)	317, 320, 637, 640, 878
HpyAV	CCTTC	2 cut(s)	163, 883
HpyCH4III	ACNGT	3 cut(s)	190, 214, 275
HpyCH4IV	ACGT	6 cut(s)	242, 315, 461, 577, 643, 650
HpyCH4V	TGCA	1 cut(s)	774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 527, 546, 759
HpyF3I	CTNAG	3 cut(s)	15, 439, 898
HpySE526I	ACGT	6 cut(s)	242, 315, 461, 577, 643, 650
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	104, 412, 786, 938
HspAI	GCGC	2 cut(s)	436, 762
KroI	GCCGGC	2 cut(s)	530, 845
KroNI	GCCGGC	2 cut(s)	532, 847
Ksp22I	TGATCA	2 cut(s)	411, 853
Kzo9I	GATC	4 cut(s)	95, 120, 411, 853
LmnI	GCTCC	3 cut(s)	256, 373, 527
Lsp1109I	GCAGC	5 cut(s)	147, 317, 530, 546, 549
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	6 cut(s)	242, 315, 461, 577, 643, 650
MaeIII	GTNAC	2 cut(s)	565, 724
MalI	GATC	4 cut(s)	97, 122, 413, 855
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	4 cut(s)	95, 120, 411, 853
MboII	GAAGA	4 cut(s)	178, 612, 697, 898
MhlI	GDGCHC	2 cut(s)	198, 329
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	339, 373, 820
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	234, 429, 897
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	845
MroNI	GCCGGC	2 cut(s)	530, 845
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	35, 126, 806, 824
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	138, 521, 700
MspI	CCGG	5 cut(s)	302, 490, 531, 546, 846
MspR9I	CCNGG	2 cut(s)	330, 546
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	435, 527, 546, 759
NaeI	GCCGGC	2 cut(s)	532, 847
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	95, 120, 411, 853
NgoMIV	GCCGGC	2 cut(s)	530, 845
NlaIII	CATG	4 cut(s)	104, 412, 786, 938
NlaIV	GGNNCC	7 cut(s)	12, 195, 258, 327, 529, 696, 752
NmuCI	GTSAC	2 cut(s)	565, 724
NotI	GCGGCCGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PdiI	GCCGGC	2 cut(s)	532, 847
PfeI	GAWTC	2 cut(s)	500, 906
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Ppu21I	YACGTR	2 cut(s)	462, 644
PpuMI	RGGWCCY	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	7 cut(s)	12, 195, 258, 327, 529, 696, 752
PspOMI	GGGCCC	1 cut(s)	325
PspPI	GGNCC	5 cut(s)	10, 325, 326, 694, 751
PspPPI	RGGWCCY	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	349
PvuII	CAGCTG	2 cut(s)	138, 521
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
SaqAI	TTAA	4 cut(s)	35, 126, 806, 824
Sau3AI	GATC	4 cut(s)	95, 120, 411, 853
Sau96I	GGNCC	5 cut(s)	10, 325, 326, 694, 751
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	330, 546
SduI	GDGCHC	2 cut(s)	198, 329
SfaNI	GCATC	1 cut(s)	433
SgrAI	CRCCGGYG	1 cut(s)	845
SinI	GGWCC	2 cut(s)	10, 694
Sse9I	AATT	3 cut(s)	339, 373, 820
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	328, 544
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	190, 214, 275
TaiI	ACGT	6 cut(s)	245, 318, 464, 580, 646, 653
TaqI	TCGA	4 cut(s)	164, 201, 420, 912
TasI	AATT	3 cut(s)	339, 373, 820
TatI	WGTACW	1 cut(s)	937
TauI	GCSGC	6 cut(s)	176, 179, 475, 478, 518, 782
TfiI	GAWTC	2 cut(s)	500, 906
Tru1I	TTAA	4 cut(s)	35, 126, 806, 824
Tru9I	TTAA	4 cut(s)	35, 126, 806, 824
TseFI	GTSAC	2 cut(s)	565, 724
TseI	GCWGC	5 cut(s)	135, 305, 518, 534, 537
Tsp45I	GTSAC	2 cut(s)	565, 724
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	3 cut(s)	21, 553, 621
VpaK11BI	GGWCC	2 cut(s)	10, 694
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 688
XspI	CTAG	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.