Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003242.1

Orthogroup ID

OG0008814

Physical Location & Seq

Genomic Coordinates Forward (+)

100324 .. 100932

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003242.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggcgaacggggatttacacaggtggctgcacgagctgccaaccggggagcccaacgtggaggattggagtgccgacacgtgggaccagagtggagcctactcgcccgagaagaagggttggctcacgcgccaccgcattgcggttggcatagcgcgtgggctggcgtacctccaccatgccgggtcgaagccggtggtacacggccaccttgtgacttcgaacatattgctcggggcgaatttcgagccgagaattgccgatttcgggctgcggaatttcgggatgagggatggagatatcggcggcgggactgagacggacgtgtattgttttggggtggtgttgatggagctgttgacggggcggcccgggacggcggagacggtggtgtgggtgaggaggatggtgagggaggcgcgtggggtggacgcgctggatgagaggttgagggaaggtggggatttggagagggagatggtggagagtctccgagttgggtacttgtgtacggcggagtcacctgggaaaaggcccagcatgcagcaggtgctgggtttgctcaaagacctacatcccagttccactgccactctgggctttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

5.9

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45800 AT5G45800
fragaria_vesca	FvH4_3g07560 FvH4_3g07560
malus_domestica	MD05G1298700.v1.1 MD10G1278000.v1.1
prunus_persica	Prupe.4G063700_v2.0.a1
pyrus_communis	pycom05g27650 pycom10g23200
rosa_chinensis	RchiOBHm_Chr5g0011151
rosa_laevigata	RLG00000031815
rosa_multiflora	Rmu_co8285897.1_g000001 Rmu_sc0002990.1_g000016 Rmu_sc0003242.1_g000021 Rmu_sc0030140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065240
rosa_rugosa	Rorug04G0455400
rosa_samantha	Rh5AG087700 Rh5BG082400 Rh5CG095400 Rh5DG082200
rosa_wichuraiana	Rw0G000210 Rw5G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	538
AccII	CGCG	4 cut(s)	130, 157, 421, 434
AciI	CCGC	8 cut(s)	136, 143, 274, 306, 309, 367, 380, 515
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	241, 277
AcvI	CACGTG	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	4 cut(s)	170, 201, 503, 511
AfiI	CCNNNNNNNGG	3 cut(s)	81, 142, 267
AflIII	ACRYGT	2 cut(s)	78, 324
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	2 cut(s)	37, 355
AluI	AGCT	2 cut(s)	37, 355
Alw26I	GTCTC	3 cut(s)	311, 377, 494
AlwNI	CAGNNNCTG	1 cut(s)	553
Ama87I	CYCGRG	3 cut(s)	107, 233, 371
AoxI	GGCC	3 cut(s)	205, 368, 533
ApeKI	GCWGC	4 cut(s)	28, 37, 271, 544
ApoI	RAATTY	2 cut(s)	241, 277
AspLEI	GCGC	4 cut(s)	132, 157, 421, 436
AspS9I	GGNCC	3 cut(s)	85, 369, 534
AsuC2I	CCSGG	4 cut(s)	46, 184, 372, 373
AsuHPI	GGTGA	3 cut(s)	409, 421, 513
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	3 cut(s)	107, 233, 371
AvaII	GGWCC	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	15, 24, 258, 556
BccI	CCATC	4 cut(s)	287, 343, 400, 472
BceAI	ACGGC	3 cut(s)	220, 393, 528
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	4 cut(s)	46, 184, 372, 373
BcoDI	GTCTC	3 cut(s)	311, 377, 494
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	6 cut(s)	29, 38, 272, 307, 368, 545
BlsI	GCNGC	6 cut(s)	30, 39, 273, 308, 369, 546
Bme1390I	CCNGG	5 cut(s)	46, 184, 372, 373, 525
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	3 cut(s)	107, 233, 371
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	85, 369, 534
BmiI	GGNNCC	3 cut(s)	51, 86, 97
BmrFI	CCNGG	5 cut(s)	46, 184, 372, 373, 525
BmrI	ACTGGG	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	4 cut(s)	46, 184, 372, 373
BsaAI	YACGTR	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	45, 371, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 142, 267
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	3 cut(s)	45, 371, 524
BseGI	GGATG	5 cut(s)	291, 298, 411, 445, 574
BseLI	CCNNNNNNNGG	3 cut(s)	81, 142, 267
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	4 cut(s)	15, 24, 258, 556
BseYI	CCCAGC	2 cut(s)	536, 553
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	4 cut(s)	130, 157, 421, 434
BshFI	GGCC	3 cut(s)	207, 370, 535
BsiHKCI	CYCGRG	3 cut(s)	107, 233, 371
BsiSI	CCGG	4 cut(s)	45, 183, 194, 372
BslFI	GGGAC	3 cut(s)	98, 325, 388
BslI	CCNNNNNNNGG	3 cut(s)	81, 142, 267
BsmAI	GTCTC	3 cut(s)	311, 377, 494
BsmBI	CGTCTC	2 cut(s)	311, 377
BsmFI	GGGAC	3 cut(s)	98, 325, 388
BsnI	GGCC	3 cut(s)	207, 370, 535
BsoBI	CYCGRG	3 cut(s)	107, 233, 371
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	8 cut(s)	136, 143, 274, 306, 309, 367, 380, 515
BspANI	GGCC	3 cut(s)	207, 370, 535
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	4 cut(s)	130, 157, 421, 434
BspLI	GGNNCC	3 cut(s)	51, 86, 97
BspMI	ACCTGC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	45, 371, 524
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	388
BstAPI	GCANNNNNTGC	2 cut(s)	37, 550
BstBAI	YACGTR	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	165, 542
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	5 cut(s)	291, 298, 411, 445, 574
BstFNI	CGCG	4 cut(s)	130, 157, 421, 434
BstHHI	GCGC	4 cut(s)	132, 157, 421, 436
BstMAI	GTCTC	3 cut(s)	311, 377, 494
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 37, 541, 550, 559
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	5 cut(s)	44, 182, 370, 371, 523
BstUI	CGCG	4 cut(s)	130, 157, 421, 434
BstV1I	GCAGC	4 cut(s)	15, 24, 258, 556
BsuRI	GGCC	3 cut(s)	207, 370, 535
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	5 cut(s)	291, 298, 411, 445, 574
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	2 cut(s)	165, 542
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	4 cut(s)	132, 157, 421, 436
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	85, 369, 534
Cfr9I	CCCGGG	1 cut(s)	371
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	169, 200, 502, 510
CviAII	CATG	2 cut(s)	179, 541
CviQI	GTAC	4 cut(s)	169, 200, 502, 510
DdeI	CTNAG	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	205
EciI	GGCGGA	2 cut(s)	395, 530
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	81
Eco88I	CYCGRG	3 cut(s)	107, 233, 371
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	311, 377
FaeI	CATG	2 cut(s)	182, 544
FaiI	YATR	4 cut(s)	152, 180, 227, 542
FaqI	GGGAC	3 cut(s)	98, 325, 388
FatI	CATG	2 cut(s)	178, 540
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	29, 38, 272, 307, 368, 545
FokI	GGATG	5 cut(s)	298, 305, 418, 452, 561
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	6 cut(s)	29, 38, 272, 307, 368, 545
GlaI	GCGC	4 cut(s)	131, 156, 420, 435
GluI	GCNGC	6 cut(s)	29, 38, 272, 307, 368, 545
GsaI	CCCAGC	2 cut(s)	540, 557
HaeIII	GGCC	3 cut(s)	207, 370, 535
HapII	CCGG	4 cut(s)	45, 183, 194, 372
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	4 cut(s)	132, 157, 421, 436
Hin1II	CATG	2 cut(s)	182, 544
Hin6I	GCGC	4 cut(s)	130, 155, 419, 434
HinP1I	GCGC	4 cut(s)	130, 155, 419, 434
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	487, 518
HpaII	CCGG	4 cut(s)	45, 183, 194, 372
HphI	GGTGA	3 cut(s)	409, 421, 513
Hpy166II	GTNNAC	4 cut(s)	202, 360, 430, 510
Hpy188I	TCNGA	2 cut(s)	494, 608
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	4 cut(s)	202, 360, 430, 510
HpyAV	CCTTC	2 cut(s)	109, 449
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	3 cut(s)	57, 80, 324
HpyCH4V	TGCA	2 cut(s)	31, 544
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 37, 541, 550, 559
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	3 cut(s)	57, 80, 324
Hsp92II	CATG	2 cut(s)	182, 544
HspAI	GCGC	4 cut(s)	130, 155, 419, 434
LmnI	GCTCC	3 cut(s)	49, 95, 352
Lsp1109I	GCAGC	4 cut(s)	15, 24, 258, 556
MaeII	ACGT	3 cut(s)	57, 80, 324
MaeIII	GTNAC	2 cut(s)	214, 519
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	3 cut(s)	241, 255, 277
MlyI	GAGTC	2 cut(s)	496, 527
MspI	CCGG	4 cut(s)	45, 183, 194, 372
MspR9I	CCNGG	5 cut(s)	46, 184, 372, 373, 525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	4 cut(s)	130, 157, 421, 434
MwoI	GCNNNNNNNGC	5 cut(s)	34, 37, 541, 550, 559
NciI	CCSGG	4 cut(s)	46, 184, 372, 373
NlaIII	CATG	2 cut(s)	182, 544
NlaIV	GGNNCC	3 cut(s)	51, 86, 97
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	214, 519
NspI	RCATGY	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	544
PaqCI	CACCTGC	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	30, 39, 273, 308, 369, 546
PleI	GAGTC	2 cut(s)	495, 526
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	2 cut(s)	495, 526
Ppu21I	YACGTR	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	523
PspCI	CACGTG	1 cut(s)	81
PspFI	CCCAGC	2 cut(s)	536, 553
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	3 cut(s)	51, 86, 97
PspPI	GGNCC	3 cut(s)	85, 369, 534
PstNI	CAGNNNCTG	1 cut(s)	553
RsaI	GTAC	4 cut(s)	170, 201, 503, 511
RsaNI	GTAC	4 cut(s)	169, 200, 502, 510
SatI	GCNGC	6 cut(s)	29, 38, 272, 307, 368, 545
Sau96I	GGNCC	3 cut(s)	85, 369, 534
SchI	GAGTC	2 cut(s)	496, 527
ScrFI	CCNGG	5 cut(s)	46, 184, 372, 373, 525
SduI	GDGCHC	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	85
SmaI	CCCGGG	1 cut(s)	373
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	3 cut(s)	241, 255, 277
SsiI	CCGC	8 cut(s)	136, 143, 274, 306, 309, 367, 380, 515
StyD4I	CCNGG	5 cut(s)	44, 182, 370, 371, 523
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	3 cut(s)	60, 83, 327
TaqI	TCGA	3 cut(s)	188, 221, 246
TasI	AATT	3 cut(s)	241, 255, 277
TauI	GCSGC	2 cut(s)	309, 370
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	2 cut(s)	214, 519
TseI	GCWGC	4 cut(s)	28, 37, 271, 544
Tsp45I	GTSAC	2 cut(s)	214, 519
TspGWI	ACGGA	1 cut(s)	335
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	241, 277
XceI	RCATGY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmaI	CCCGGG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.