Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030140.1

Orthogroup ID

OG0008814

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 728

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 449 bp

atgttcgaaaacctgtcgaagttgaaacacccgaacttgttgcctgtctccggttactgcattgcagggaaagagaagctggtgttgtatgagttcatggcgaacggggatttacacaggtggctgcacgagctgccaaccggggagcccaacgtggaggattggagtgccgacacgtgggaccagagtggagcctactcgcccgagaagaagggttggctcacgcgccaccgcattgcggttggcatagcgcgtgggctggcgtacctccaccatgccgggtcgaagccggtggtacacggccaccttgtgacctcgaacatattgctaggggcgaatttcgagccgagaattgccgatttcgggctacggaatttcgggatgagggatggagatatcggcggcgggactgagacggacgtgtattgttttggggtggtgttgatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

6.22

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45800 AT5G45800
fragaria_vesca	FvH4_3g07560 FvH4_3g07560
malus_domestica	MD05G1298700.v1.1 MD10G1278000.v1.1
prunus_persica	Prupe.4G063700_v2.0.a1
pyrus_communis	pycom05g27650 pycom10g23200
rosa_chinensis	RchiOBHm_Chr5g0011151
rosa_laevigata	RLG00000031815
rosa_multiflora	Rmu_co8285897.1_g000001 Rmu_sc0002990.1_g000016 Rmu_sc0003242.1_g000021 Rmu_sc0030140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065240
rosa_rugosa	Rorug04G0455400
rosa_samantha	Rh5AG087700 Rh5BG082400 Rh5CG095400 Rh5DG082200
rosa_wichuraiana	Rw0G000210 Rw5G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	226, 253
AciI	CCGC	4 cut(s)	232, 239, 402, 405
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	337, 373
AcvI	CACGTG	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	2 cut(s)	266, 297
AfiI	CCNNNNNNNGG	4 cut(s)	50, 177, 238, 363
AflIII	ACRYGT	2 cut(s)	174, 420
AgsI	TTSAA	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	421
AluBI	AGCT	2 cut(s)	79, 133
AluI	AGCT	2 cut(s)	79, 133
Alw26I	GTCTC	2 cut(s)	52, 407
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	124, 133
ApoI	RAATTY	2 cut(s)	337, 373
AspLEI	GCGC	2 cut(s)	228, 253
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	142, 280
AsuII	TTCGAA	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	111, 120
BccI	CCATC	2 cut(s)	383, 439
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 307, 341
BcnI	CCSGG	2 cut(s)	142, 280
BcoDI	GTCTC	2 cut(s)	52, 407
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	125, 134, 403
BlsI	GCNGC	3 cut(s)	126, 135, 404
Bme1390I	CCNGG	2 cut(s)	142, 280
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	147, 182, 193
BmrFI	CCNGG	2 cut(s)	142, 280
Bpu14I	TTCGAA	1 cut(s)	6
BpuMI	CCSGG	2 cut(s)	142, 280
BsaAI	YACGTR	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 177, 238, 363
Bse118I	RCCGGY	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	60, 234
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	387, 394
BseLI	CCNNNNNNNGG	4 cut(s)	50, 177, 238, 363
BseMI	GCAATG	2 cut(s)	60, 234
BseMII	CTCAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	111, 120
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	2 cut(s)	226, 253
BshFI	GGCC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	51, 141, 279, 290
BslFI	GGGAC	2 cut(s)	194, 421
BslI	CCNNNNNNNGG	4 cut(s)	50, 177, 238, 363
BsmAI	GTCTC	2 cut(s)	52, 407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	194, 421
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	150
BspACI	CCGC	4 cut(s)	232, 239, 402, 405
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	226, 253
BspLI	GGNNCC	3 cut(s)	147, 182, 193
BspT104I	TTCGAA	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	60, 234
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	387, 394
BstFNI	CGCG	2 cut(s)	226, 253
BstHHI	GCGC	2 cut(s)	228, 253
BstMAI	GTCTC	2 cut(s)	52, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 133
BstSCI	CCNGG	2 cut(s)	140, 278
BstUI	CGCG	2 cut(s)	226, 253
BstV1I	GCAGC	2 cut(s)	111, 120
BsuRI	GGCC	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	387, 394
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	2 cut(s)	228, 253
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	265, 296
CviAII	CATG	2 cut(s)	97, 275
CviQI	GTAC	2 cut(s)	265, 296
DdeI	CTNAG	1 cut(s)	411
DraIII	CACNNNGTG	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	100, 278
FaiI	YATR	5 cut(s)	90, 98, 248, 276, 323
FaqI	GGGAC	2 cut(s)	194, 421
FatI	CATG	2 cut(s)	96, 274
FauI	CCCGC	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	125, 134, 403
FokI	GGATG	2 cut(s)	394, 401
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	125, 134, 403
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	2 cut(s)	227, 252
GluI	GCNGC	3 cut(s)	125, 134, 403
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	4 cut(s)	51, 141, 279, 290
HhaI	GCGC	2 cut(s)	228, 253
Hin1II	CATG	2 cut(s)	100, 278
Hin6I	GCGC	2 cut(s)	226, 251
HinP1I	GCGC	2 cut(s)	226, 251
HpaII	CCGG	4 cut(s)	51, 141, 279, 290
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	153, 176, 420
HpyCH4V	TGCA	3 cut(s)	60, 65, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 133
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	3 cut(s)	153, 176, 420
Hsp92II	CATG	2 cut(s)	100, 278
HspAI	GCGC	2 cut(s)	226, 251
LmnI	GCTCC	2 cut(s)	145, 191
Lsp1109I	GCAGC	2 cut(s)	111, 120
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	3 cut(s)	153, 176, 420
MaeIII	GTNAC	2 cut(s)	53, 310
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	337, 351, 373
MnlI	CCTC	4 cut(s)	151, 278, 325, 378
MspI	CCGG	4 cut(s)	51, 141, 279, 290
MspR9I	CCNGG	2 cut(s)	142, 280
MvnI	CGCG	2 cut(s)	226, 253
MwoI	GCNNNNNNNGC	2 cut(s)	130, 133
NciI	CCSGG	2 cut(s)	142, 280
NlaIII	CATG	2 cut(s)	100, 278
NlaIV	GGNNCC	3 cut(s)	147, 182, 193
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	126, 135, 404
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	147, 182, 193
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	266, 297
RsaNI	GTAC	2 cut(s)	265, 296
SatI	GCNGC	3 cut(s)	125, 134, 403
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	142, 280
SduI	GDGCHC	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	337, 351, 373
SsiI	CCGC	4 cut(s)	232, 239, 402, 405
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	140, 278
TaiI	ACGT	3 cut(s)	156, 179, 423
TaqI	TCGA	5 cut(s)	6, 17, 284, 317, 342
TasI	AATT	3 cut(s)	337, 351, 373
TauI	GCSGC	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	124, 133
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	2 cut(s)	385, 431
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	337, 373
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.