Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298845.1

Orthogroup ID

OG0003613

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 834

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

atgtatagacccggttcttattctgacaaatatgaagatgatcgttatggaggcagggatgaagataggaacggttatggttatggaaaggacaaagaatggggttataaggatgatgaccgttatggaagagctggggattcatatagtcgtgatggagatcgttatggcagagaatatgaggaacgcaatggcagagaaggttacagagatgatgattaccgtggaagaagccgaagtgttgatgaataccagtatggctctagaagtagaagctctgatagagagagagagcgtgcatatgatgatgatggtcaatattcatctcgtggcagtggtgctagagctgatgaccaatctcaggatggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

123

Amino Acids

14.52

Weight (kDa)

4.77

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43160 AT2G43160 AT2G43160 AT2G43160 AT2G43160 AT3G59290
fragaria_vesca	FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622
malus_domestica	MD00G1184300.v1.1 MD04G1031100.v1.1
prunus_persica	Prupe.1G182600_v2.0.a1 Prupe.1G182600_v2.0.a1
pyrus_communis	pycom13g29520
rosa_chinensis	RchiOBHm_Chr4g0408771
rosa_laevigata	RLG00000008632
rosa_multiflora	Rmu_co8298845.1_g000001 Rmu_sc0005878.1_g000006 Rmu_sc0007333.1_g000008
rosa_roxburghii	Rroxscaffold_5G00353120
rosa_rugosa	Rorug04G0087500 Rorug04G0087600 Rorug04G0087700
rosa_samantha	Rh4AG151800 Rh4BG149100 Rh4CG159900 Rh4DG145000
rosa_wichuraiana	Rw4G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	134, 276, 347
AluI	AGCT	3 cut(s)	134, 276, 347
AsuC2I	CCSGG	1 cut(s)	12
BauI	CACGAG	1 cut(s)	327
BccI	CCATC	3 cut(s)	149, 305, 359
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	2 cut(s)	264, 342
Bme1390I	CCNGG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	64, 118, 370
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	40, 160
BspQI	GCTCTTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	40, 160
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	74, 122, 224
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	64, 118, 370
BstKTI	GATC	2 cut(s)	43, 163
BstMBI	GATC	2 cut(s)	40, 160
BstSCI	CCNGG	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	64, 118, 370
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	297
CviJI	RGCY	5 cut(s)	134, 234, 261, 276, 347
CviKI_1	RGCY	5 cut(s)	134, 234, 261, 276, 347
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	42, 162
DpnII	GATC	2 cut(s)	40, 160
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	301
FokI	GGATG	2 cut(s)	71, 125
FspBI	CTAG	2 cut(s)	264, 342
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	12
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	25, 280
Hpy188III	TCNNGA	3 cut(s)	152, 264, 362
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	74, 122, 224
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	40, 160
LguI	GCTCTTC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	25, 40, 120, 266, 347
MaeI	CTAG	2 cut(s)	264, 342
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	42, 162
MboI	GATC	2 cut(s)	40, 160
MboII	GAAGA	4 cut(s)	47, 74, 141, 240
MnlI	CCTC	2 cut(s)	44, 175
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	40, 160
PciSI	GCTCTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	124
Sau3AI	GATC	2 cut(s)	40, 160
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	4 cut(s)	136, 205, 278, 349
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	264, 342
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	74, 122, 224
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	48, 75, 132, 261, 312
TspRI	CASTG	1 cut(s)	340
XbaI	TCTAGA	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	264, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.