Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003613

Physical Location & Seq

Genomic Coordinates Reverse (-)

38339936 .. 38341571

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGAAAGTCTTTGATCAAACTGTCAGGGACCTAAAGAGAGGGGTGAACAAGAAAGTGCTTAAAGTTCCTGGAATTGAACAGAAGGTTCTCGATGCTACTAGTAATGAGCCGTGGGGTCCTCATGGATCACTTCTTGCTGATATTGCACAAGCAACCAGAAACTATCATGAGTACCAAATGATTATGGCCGTGATTTGGAAGCGGCTTAGTGATACTGGGAAAAACTGGCGGCATGTCTACAAGGGTTTAACTGTATTGGAATACATGGTGGCCCATGGCTCGGAGCGTGTCATTGATGATATCAAGGAGCATGTATATCAAATATCGACATTGTCCGATTTTCAATACATTGATTCCAGTGGAAGGGACCAGGGAAGTAATGTCAGAAAGAAGTCTCAGAGTCTTGTGGCTCTTGTGAATGATAGGGAAAGGATAATTGAGGTTAGACAGAAAGCAGCTGCCAACAGGGACAAGTTTCGCAACACACCGTCATCTGGTGGAATGTATAGACCCGGTTCTTATTCTGACAAATATGAAGATGATCGTTATGGAGGCAGGGAAGAAGATAGGAACGGTTATGGTTATGGAAAGGACAAAGAATGGGGTTATAAGGATGATGACCGTTATGGAAGAGCTGGGGATTCATATAGTCGTGATGGAGATCGTTATGGCAGAGAATATGAGGAACGCAATGGCAGAGAAGGTTACAGAGATGATGATTACCGTGGAAGAAGCCGAAGTGTTGATGAATACCAGTATGGCTCTAGAAGTAGAAGCTCTGATAGAGAGAGAGAGCGTGCATATGATGATGATGGTCAATATTCATCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0008289 GO:0012505 GO:0016020 GO:0030276 GO:0031090 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ENTH

Protein Analysis

278

Amino Acids

32.44

Weight (kDa)

8.7

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENTH	PF01417	26 - 146	2.7e-49	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43160 AT2G43160 AT2G43160 AT2G43160 AT2G43160 AT3G59290
fragaria_vesca	FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622 FvH4_4g11622
malus_domestica	MD00G1184300.v1.1 MD04G1031100.v1.1
prunus_persica	Prupe.1G182600_v2.0.a1 Prupe.1G182600_v2.0.a1
pyrus_communis	pycom13g29520
rosa_chinensis	RchiOBHm_Chr4g0408771
rosa_laevigata	RLG00000008632
rosa_multiflora	Rmu_co8298845.1_g000001 Rmu_sc0005878.1_g000006 Rmu_sc0007333.1_g000008
rosa_roxburghii	Rroxscaffold_5G00353120
rosa_rugosa	Rorug04G0087500 Rorug04G0087600 Rorug04G0087700
rosa_samantha	Rh4AG151800 Rh4BG149100 Rh4CG159900 Rh4DG145000
rosa_wichuraiana	Rw4G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	2 cut(s)	205, 232
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	189
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	198, 283, 366, 497
AgsI	TTSAA	2 cut(s)	80, 347
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	70, 372
AluBI	AGCT	3 cut(s)	461, 638, 780
AluI	AGCT	3 cut(s)	461, 638, 780
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	189, 273
ApeKI	GCWGC	2 cut(s)	458, 461
AspS9I	GGNCC	4 cut(s)	31, 119, 274, 370
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	3 cut(s)	31, 119, 370
BbvI	GCAGC	2 cut(s)	448, 470
BccI	CCATC	2 cut(s)	653, 809
BceAI	ACGGC	2 cut(s)	97, 176
BciT130I	CCWGG	2 cut(s)	72, 374
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	402
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	2 cut(s)	102, 768
BisI	GCNGC	4 cut(s)	206, 233, 459, 462
BlsI	GCNGC	4 cut(s)	207, 234, 460, 463
Bme1390I	CCNGG	3 cut(s)	72, 374, 516
Bme18I	GGWCC	3 cut(s)	31, 119, 370
BmgT120I	GGNCC	4 cut(s)	31, 119, 274, 370
BmiI	GGNNCC	3 cut(s)	32, 120, 371
BmrFI	CCNGG	3 cut(s)	72, 374, 516
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	4 cut(s)	113, 277, 373, 727
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 283, 366, 497
Bse1I	ACTGG	4 cut(s)	223, 233, 360, 757
Bse3DI	GCAATG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	72, 374
BseDI	CCNNGG	4 cut(s)	113, 277, 373, 727
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	4 cut(s)	198, 283, 366, 497
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	4 cut(s)	223, 233, 360, 757
BseXI	GCAGC	2 cut(s)	448, 470
BseYI	CCCAGC	1 cut(s)	638
BshFI	GGCC	2 cut(s)	191, 275
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	3 cut(s)	44, 383, 485
BslI	CCNNNNNNNGG	4 cut(s)	198, 283, 366, 497
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	3 cut(s)	44, 383, 485
BsnI	GGCC	2 cut(s)	191, 275
Bsp143I	GATC	4 cut(s)	16, 128, 544, 664
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	205, 232
BspANI	GGCC	2 cut(s)	191, 275
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	32, 120, 371
BspPI	GGATC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	700
BsrI	ACTGG	4 cut(s)	223, 233, 360, 757
BssECI	CCNNGG	4 cut(s)	113, 277, 373, 727
BssMI	GATC	4 cut(s)	16, 128, 544, 664
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	72, 374
Bst4CI	ACNGT	6 cut(s)	25, 256, 492, 578, 626, 728
Bst6I	CTCTTC	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	2 cut(s)	209, 399
BstDSI	CCRYGG	3 cut(s)	113, 277, 727
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	4 cut(s)	19, 131, 547, 667
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	4 cut(s)	16, 128, 544, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	72, 374
BstNSI	RCATGY	2 cut(s)	239, 317
BstSCI	CCNGG	3 cut(s)	70, 372, 514
BstV1I	GCAGC	2 cut(s)	448, 470
BsuRI	GGCC	2 cut(s)	191, 275
BtgI	CCRYGG	3 cut(s)	113, 277, 727
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	801
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	4 cut(s)	31, 119, 274, 370
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	6 cut(s)	125, 170, 236, 268, 278, 314
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	209, 399
DpnI	GATC	4 cut(s)	18, 130, 546, 666
DpnII	GATC	4 cut(s)	16, 128, 544, 664
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	3 cut(s)	31, 119, 370
EcoO109I	RGGNCCY	2 cut(s)	31, 119
EcoRII	CCWGG	2 cut(s)	70, 372
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	128, 173, 239, 271, 281, 317
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	3 cut(s)	44, 383, 485
FatI	CATG	6 cut(s)	124, 169, 235, 267, 277, 313
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	206, 233, 459, 462
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	4 cut(s)	206, 233, 459, 462
FspBI	CTAG	2 cut(s)	102, 768
GluI	GCNGC	4 cut(s)	206, 233, 459, 462
GsaI	CCCAGC	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	191, 275
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	6 cut(s)	128, 173, 239, 271, 281, 317
HinfI	GANTC	3 cut(s)	356, 403, 644
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	49, 241
Hpy188I	TCNGA	6 cut(s)	286, 340, 389, 402, 529, 784
Hpy188III	TCNNGA	4 cut(s)	92, 170, 656, 768
Hpy8I	GTNNAC	2 cut(s)	49, 241
HpyAV	CCTTC	3 cut(s)	79, 360, 698
HpyCH4III	ACNGT	6 cut(s)	25, 256, 492, 578, 626, 728
HpyCH4V	TGCA	2 cut(s)	149, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	209, 399
Hsp92II	CATG	6 cut(s)	128, 173, 239, 271, 281, 317
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 128, 544, 664
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	286, 310
Lsp1109I	GCAGC	2 cut(s)	448, 470
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	102, 768
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	4 cut(s)	18, 130, 546, 666
MboI	GATC	4 cut(s)	16, 128, 544, 664
MboII	GAAGA	6 cut(s)	16, 551, 575, 578, 645, 744
MluCI	AATT	2 cut(s)	75, 438
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	35, 132, 436, 548, 679
MseI	TTAA	2 cut(s)	63, 251
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	3 cut(s)	72, 374, 516
MvaI	CCWGG	2 cut(s)	72, 374
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	516
NcoI	CCATGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	4 cut(s)	16, 128, 544, 664
NlaIII	CATG	6 cut(s)	128, 173, 239, 271, 281, 317
NlaIV	GGNNCC	3 cut(s)	32, 120, 371
NspI	RCATGY	2 cut(s)	239, 317
PagI	TCATGA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	356, 644
PflFI	GACNNNGTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	207, 234, 460, 463
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PpuMI	RGGWCCY	2 cut(s)	31, 119
PsiI	TTATAA	1 cut(s)	612
Psp5II	RGGWCCY	2 cut(s)	31, 119
Psp6I	CCWGG	2 cut(s)	70, 372
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	70, 372
PspN4I	GGNNCC	3 cut(s)	32, 120, 371
PspPI	GGNCC	4 cut(s)	31, 119, 274, 370
PspPPI	RGGWCCY	2 cut(s)	31, 119
PsyI	GACNNNGTC	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	63, 251
SatI	GCNGC	4 cut(s)	206, 233, 459, 462
Sau3AI	GATC	4 cut(s)	16, 128, 544, 664
Sau96I	GGNCC	4 cut(s)	31, 119, 274, 370
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	3 cut(s)	72, 374, 516
SetI	ASST	7 cut(s)	36, 90, 447, 463, 640, 709, 782
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	3 cut(s)	31, 119, 370
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	2 cut(s)	75, 438
SsiI	CCGC	2 cut(s)	205, 232
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	2 cut(s)	102, 768
StyD4I	CCNGG	3 cut(s)	70, 372, 514
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	6 cut(s)	25, 256, 492, 578, 626, 728
TaqI	TCGA	2 cut(s)	93, 329
TasI	AATT	2 cut(s)	75, 438
TauI	GCSGC	2 cut(s)	208, 235
TfiI	GAWTC	2 cut(s)	356, 644
Tru1I	TTAA	2 cut(s)	63, 251
Tru9I	TTAA	2 cut(s)	63, 251
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	458, 461
TspDTI	ATGAA	5 cut(s)	17, 552, 636, 765, 816
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	3 cut(s)	31, 119, 370
XbaI	TCTAGA	1 cut(s)	767
XceI	RCATGY	2 cut(s)	239, 317
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	2 cut(s)	102, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.