Rorug04G0087500

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
13549166 .. 13554155
4990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0087500.1

Sequence Viewer

Length: 1767 bp
ATGGCCAGGCCATTCTCTCATATCAGAAAGATGAACAACGTTTTTGTTCCTTGTCGTAGGAAATTAGAGGGCATTTCATGCAATCACAAACTCCCTTGCATCCGCCAATCTTCTTGTAAAGGTCTAATTCGTTCACTCTTTCGCTTCCTACTCTTCCTTTTAAATCCTTTCATTATCGAACTTATTTACGTTTTAATGGTCTCTGTCCTGGGTTATTTGGCTTTGAGGGTCACAAAACCAAGAACTAGAACTTCCTTTAGGCCCAAGGATTTTGATTTGTTCTTCACATCTGTGTCTTCCACAACAGTAGCAAGCATGTCAACTGTAGAAATGGAGGTCTTTTCAAACACCCAACTCATCATTATGACCATTTTGATGCTAGCGGGTGGAGAGGTTTTCACTTCCTTGCTTGGACTTCAAATTGCAGAGTCCAAGATTGCCAAATTTCATGATAACAAAGTTGATGTAGAACTCAGCTCTTCTAATAAGGCCTCCTTCGATCGAATAGAATTTCATGATAACAAAGTTGATGTAGAACTCAACTCTTCTAATAAGGCCTCCTTCGATCGAATAGAGTTAGGTTTGGTTACCCTTTCACAGTTAGAGAGTGAGCAGAAACCTAACATTCATAATGGTTTAAAAACCTTTGACAAGGATATCAAGTACAAGTCTATTAGGTGTCTGGCCTATGTGGTTTTAGGTTATCTTCTAGTGGTTCATATAGGTGGTTCCAGTTTAGTTTCATTGTACATTATCCTTGTTCCAAGTGCAAGACAAGTACTCAAAAACAAAGGCATTGAAATCCAAACCTTTGCTGTTTTCACCACGGTTTCCACCTTTGCAAACTGTGGTTTTGTCCCCACAAACGAGAATATGATCATTTTCAAGAACAATTCTGGGCTTTTACTTCTTTTAATTCCCCAAATCCTTCTTGGAAACACCTTATATCCCGTGATCCTTCGATTTGTGATTTGGGGTTTGGAGAAAACCACAAGGAGGGTGGAGTTCAGTTACATATTGAAGAATCATAAAGAATTGGGTTACAGTCATGTGCTATCTGGTCTTCATTCTCTTCTTCTACTTGCCACTGTCTTGGGGTTCATAGCAGTTCAGCTGATACTATTTTGTGCCATGGAGTGGAAATCTGAAGCCATGGATGGTCTGAGTGGCTATCAGAAATTTGTGGCGTCATTGTTTCAAACGGTGAATTCCAGGCATGCTGGTGAATCGGTTGTTGATCTCTCCATCATCTCTCCTGCAATCTTGGTGCTATTTGTCTTGATGATGTATCTTCCACCGTATACTACATTTGATCCAGCAATTGGTGGTTGTCAAGAAGGTGATGCTTCAGGAAAAGAAGAAATTCGAAATCCGAGAAAGACTTTGCTGGAGTCTCTAATATTCTCACAGCTGACTTATTTAACCATCTTTGTCATATTCGTTTGCATCACAGAGAGACAAAAGATGATGGAAGACCCCCTCAACTTCAATGTGTTGAATGTTGTCGTAGAAGTAATAAGTGCATATGGAAATGTTGGGTTTACAACTGGCTACAGTTGTAAACGTCGACTGAAGGCGGAGGGTGATTGTATAGACAAATGGTACGGTTTGGTTGGAAGATTTAGTACTGAAGGAAAGTTCATCCTCATTCTTGTCATGTTCTTTGGAAGGCTAAAGAAATTCAGTATGAAGCAGGGTAAAGCATGGAAGCTATCTGAGCATTCAAAGTATCTCTTATCTGTAACTCGCTATGTTAGTTGTGTTTAA

Protein Analysis

588

Amino Acids

66.3

Weight (kDa)

9.29

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TrkH PF02386 215 - 431 9.3e-27 Cation transport protein
TrkH PF02386 460 - 562 2.6e-07 Cation transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1137, 1322
AccI GTMKAC 2 cut(s) 1301, 1567
AciI CCGC 3 cut(s) 103, 383, 1577
AclI AACGTT 1 cut(s) 39
AclWI GGATC 2 cut(s) 949, 1307
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 6 cut(s) 443, 509, 1178, 1207, 1362, 1679
AcuI CTGAAG 4 cut(s) 1167, 1332, 1592, 1650
AcyI GRCGYC 1 cut(s) 1187
AfaI GTAC 5 cut(s) 665, 749, 780, 1604, 1627
AfiI CCNNNNNNNGG 3 cut(s) 996, 1137, 1322
AgsI TTSAA 9 cut(s) 345, 419, 800, 886, 1021, 1199, 1489, 1498, 1725
AjnI CCWGG 3 cut(s) 5, 207, 1211
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 4 cut(s) 477, 1114, 1411, 1711
AluI AGCT 4 cut(s) 477, 1114, 1411, 1711
Alw26I GTCTC 3 cut(s) 205, 1398, 1450
AlwI GGATC 2 cut(s) 949, 1307
AoxI GGCC 6 cut(s) 3, 8, 260, 489, 555, 684
ApoI RAATTY 6 cut(s) 443, 509, 1178, 1207, 1362, 1679
Asp700I GAANNNNTTC 1 cut(s) 1362
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 5 cut(s) 814, 1216, 1235, 1352, 1595
AsuII TTCGAA 1 cut(s) 1366
AsuNHI GCTAGC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 1609, 1641
BbsI GAAGAC 3 cut(s) 288, 1055, 1479
BccI CCATC 4 cut(s) 1151, 1253, 1433, 1462
BciT130I CCWGG 3 cut(s) 7, 209, 1213
BclI TGATCA 1 cut(s) 876
BcoDI GTCTC 3 cut(s) 205, 1398, 1450
BfaI CTAG 3 cut(s) 246, 380, 710
BfmI CTRYAG 2 cut(s) 324, 1552
BmcAI AGTACT 2 cut(s) 780, 1627
Bme1390I CCNGG 3 cut(s) 7, 209, 1213
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 3 cut(s) 7, 209, 1213
BmsI GCATC 4 cut(s) 108, 366, 1333, 1455
BmtI GCTAGC 1 cut(s) 383
BpiI GAAGAC 3 cut(s) 288, 1055, 1479
BpmI CTGGAG 1 cut(s) 1409
Bpu14I TTCGAA 1 cut(s) 1366
BsaHI GRCGYC 1 cut(s) 1187
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 5 cut(s) 208, 264, 825, 1131, 1152
Bsc4I CCNNNNNNNGG 3 cut(s) 996, 1137, 1322
Bse1I ACTGG 2 cut(s) 732, 1552
BseBI CCWGG 3 cut(s) 7, 209, 1213
BseDI CCNNGG 5 cut(s) 208, 264, 825, 1131, 1152
BseGI GGATG 3 cut(s) 99, 1162, 1641
BseLI CCNNNNNNNGG 3 cut(s) 996, 1137, 1322
BseMII CTCAG 3 cut(s) 487, 1154, 1707
BseNI ACTGG 2 cut(s) 732, 1552
Bsh1285I CGRYCG 2 cut(s) 502, 568
BshFI GGCC 6 cut(s) 5, 10, 262, 491, 557, 686
BsiEI CGRYCG 2 cut(s) 502, 568
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 3 cut(s) 996, 1137, 1322
BsmAI GTCTC 3 cut(s) 205, 1398, 1450
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 1720
BsnI GGCC 6 cut(s) 5, 10, 262, 491, 557, 686
Bso31I GGTCTC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 1366
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
Bsp19I CCATGG 2 cut(s) 1131, 1152
BspACI CCGC 3 cut(s) 103, 383, 1577
BspANI GGCC 6 cut(s) 5, 10, 262, 491, 557, 686
BspCNI CTCAG 3 cut(s) 486, 1155, 1708
BspHI TCATGA 2 cut(s) 448, 514
BspLI GGNNCC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 2 cut(s) 949, 1307
BspQI GCTCTTC 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 1366
BspTNI GGTCTC 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 732, 1552
BssECI CCNNGG 5 cut(s) 208, 264, 825, 1131, 1152
BssMI GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
BssNAI GTATAC 1 cut(s) 1302
BssNI GRCGYC 1 cut(s) 1187
BssT1I CCWWGG 3 cut(s) 264, 1131, 1152
Bst1107I GTATAC 1 cut(s) 1302
Bst2UI CCWGG 3 cut(s) 7, 209, 1213
Bst6I CTCTTC 4 cut(s) 158, 484, 550, 1077
BstACI GRCGYC 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 747
BstBI TTCGAA 1 cut(s) 1366
BstC8I GCNNGC 3 cut(s) 313, 381, 1218
BstDEI CTNAG 3 cut(s) 473, 1163, 1716
BstDSI CCRYGG 3 cut(s) 825, 1131, 1152
BstEII GGTNACC 1 cut(s) 586
BstF5I GGATG 3 cut(s) 99, 1162, 1641
BstKTI GATC 6 cut(s) 502, 568, 879, 957, 1240, 1315
BstMAI GTCTC 3 cut(s) 205, 1398, 1450
BstMBI GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
BstMCI CGRYCG 2 cut(s) 502, 568
BstMWI GCNNNNNNNGC 2 cut(s) 78, 1717
BstNI CCWGG 3 cut(s) 7, 209, 1213
BstNSI RCATGY 2 cut(s) 319, 1220
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 5, 207, 1211
BstSFI CTRYAG 2 cut(s) 324, 1552
BstV2I GAAGAC 3 cut(s) 288, 1055, 1479
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstZ17I GTATAC 1 cut(s) 1302
BsuRI GGCC 6 cut(s) 5, 10, 262, 491, 557, 686
BtgI CCRYGG 3 cut(s) 825, 1131, 1152
BtsCI GGATG 3 cut(s) 99, 1162, 1641
BtsIMutI CAGTG 1 cut(s) 1086
Cac8I GCNNGC 3 cut(s) 313, 381, 1218
CciI TCATGA 2 cut(s) 448, 514
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 1 cut(s) 1176
Csp6I GTAC 5 cut(s) 664, 748, 779, 1603, 1626
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviQI GTAC 5 cut(s) 664, 748, 779, 1603, 1626
DdeI CTNAG 3 cut(s) 473, 1163, 1716
DpnI GATC 6 cut(s) 501, 567, 878, 956, 1239, 1314
DpnII GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
DraI TTTAAA 2 cut(s) 162, 639
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 158, 484, 550, 1077
EarI CTCTTC 4 cut(s) 158, 484, 550, 1077
EciI GGCGGA 2 cut(s) 92, 1592
Eco130I CCWWGG 3 cut(s) 264, 1131, 1152
Eco147I AGGCCT 2 cut(s) 491, 557
Eco31I GGTCTC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 658
Eco57I CTGAAG 4 cut(s) 1167, 1332, 1592, 1650
Eco91I GGTNACC 1 cut(s) 586
EcoO65I GGTNACC 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 1207
EcoRII CCWGG 3 cut(s) 5, 207, 1211
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 3 cut(s) 264, 1131, 1152
ErhI CCWWGG 3 cut(s) 264, 1131, 1152
FalI AAGNNNNNCTT 6 cut(s) 479, 511, 545, 577, 1718, 1750
FaqI GGGAC 1 cut(s) 842
FauI CCCGC 1 cut(s) 376
FauNDI CATATG 1 cut(s) 1525
FbaI TGATCA 1 cut(s) 876
FblI GTMKAC 2 cut(s) 1301, 1567
FokI GGATG 3 cut(s) 86, 1169, 1628
FspBI CTAG 3 cut(s) 246, 380, 710
GsuI CTGGAG 1 cut(s) 1409
HaeIII GGCC 6 cut(s) 5, 10, 262, 491, 557, 686
HgaI GACGC 1 cut(s) 1176
Hin1I GRCGYC 1 cut(s) 1187
HincII GTYRAC 2 cut(s) 321, 1568
HindII GTYRAC 2 cut(s) 321, 1568
HinfI GANTC 4 cut(s) 428, 1024, 1226, 1391
HphI GGTGA 5 cut(s) 814, 1216, 1235, 1352, 1595
Hpy166II GTNNAC 6 cut(s) 134, 321, 1302, 1542, 1562, 1568
Hpy188I TCNGA 6 cut(s) 26, 1147, 1164, 1176, 1374, 1717
Hpy188III TCNNGA 6 cut(s) 449, 515, 886, 1279, 1334, 1350
Hpy8I GTNNAC 6 cut(s) 134, 321, 1302, 1542, 1562, 1568
Hpy99I CGWCG 1 cut(s) 1569
HpyAV CCTTC 8 cut(s) 505, 571, 938, 968, 1331, 1567, 1625, 1662
HpyCH4IV ACGT 3 cut(s) 39, 189, 1564
HpyCH4V TGCA 8 cut(s) 81, 99, 425, 770, 842, 1259, 1446, 1523
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 1717
HpyF3I CTNAG 3 cut(s) 473, 1163, 1716
HpySE526I ACGT 3 cut(s) 39, 189, 1564
Hsp92I GRCGYC 1 cut(s) 1187
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
LguI GCTCTTC 1 cut(s) 484
LweI GCATC 4 cut(s) 108, 366, 1333, 1455
MaeI CTAG 3 cut(s) 246, 380, 710
MaeII ACGT 3 cut(s) 39, 189, 1564
MaeIII GTNAC 5 cut(s) 229, 586, 1010, 1040, 1741
MalI GATC 6 cut(s) 501, 567, 878, 956, 1239, 1314
MboI GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
MfeI CAATTG 1 cut(s) 1320
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 437, 1400
MmeI TCCRAC 1 cut(s) 1594
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1362
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 161, 194, 638, 914, 1421, 1765
MslI CAYNNNNRTG 5 cut(s) 290, 362, 374, 723, 1221
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 1114, 1411
MspR9I CCNGG 3 cut(s) 7, 209, 1213
MunI CAATTG 1 cut(s) 1320
Mva1269I GAATGC 1 cut(s) 1720
MvaI CCWGG 3 cut(s) 7, 209, 1213
MwoI GCNNNNNNNGC 2 cut(s) 78, 1717
NcoI CCATGG 2 cut(s) 1131, 1152
NdeI CATATG 1 cut(s) 1525
NdeII GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
NheI GCTAGC 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 2 cut(s) 319, 1220
NspV TTCGAA 1 cut(s) 1366
OliI CACNNNNGTG 1 cut(s) 290
PaeI GCATGC 1 cut(s) 1220
PagI TCATGA 2 cut(s) 448, 514
PceI AGGCCT 2 cut(s) 491, 557
PciSI GCTCTTC 1 cut(s) 484
PctI GAATGC 1 cut(s) 1720
PdmI GAANNNNTTC 1 cut(s) 1362
PfeI GAWTC 2 cut(s) 1024, 1226
PflMI CCANNNNNTGG 2 cut(s) 1137, 1322
Ple19I CGATCG 2 cut(s) 502, 568
PleI GAGTC 2 cut(s) 436, 1399
PpsI GAGTC 2 cut(s) 436, 1399
Psp1406I AACGTT 1 cut(s) 39
Psp6I CCWGG 3 cut(s) 5, 207, 1211
PspEI GGTNACC 1 cut(s) 586
PspGI CCWGG 3 cut(s) 5, 207, 1211
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 1 cut(s) 261
PvuI CGATCG 2 cut(s) 502, 568
PvuII CAGCTG 2 cut(s) 1114, 1411
RsaI GTAC 5 cut(s) 665, 749, 780, 1604, 1627
RsaNI GTAC 5 cut(s) 664, 748, 779, 1603, 1626
RseI CAYNNNNRTG 5 cut(s) 290, 362, 374, 723, 1221
SalI GTCGAC 1 cut(s) 1566
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 6 cut(s) 161, 194, 638, 914, 1421, 1765
Sau3AI GATC 6 cut(s) 499, 565, 876, 954, 1237, 1312
Sau96I GGNCC 1 cut(s) 261
ScaI AGTACT 2 cut(s) 780, 1627
SchI GAGTC 2 cut(s) 437, 1400
ScrFI CCNGG 3 cut(s) 7, 209, 1213
SfaNI GCATC 4 cut(s) 108, 366, 1333, 1455
SfcI CTRYAG 2 cut(s) 324, 1552
SfuI TTCGAA 1 cut(s) 1366
SmiMI CAYNNNNRTG 5 cut(s) 290, 362, 374, 723, 1221
SphI GCATGC 1 cut(s) 1220
SseBI AGGCCT 2 cut(s) 491, 557
SsiI CCGC 3 cut(s) 103, 383, 1577
SspI AATATT 1 cut(s) 1401
SspMI CTAG 3 cut(s) 246, 380, 710
StuI AGGCCT 2 cut(s) 491, 557
StyD4I CCNGG 3 cut(s) 5, 207, 1211
StyI CCWWGG 3 cut(s) 264, 1131, 1152
TaiI ACGT 3 cut(s) 42, 192, 1567
TaqI TCGA 8 cut(s) 177, 498, 502, 564, 568, 961, 1366, 1567
TatI WGTACW 4 cut(s) 663, 747, 778, 1625
TfiI GAWTC 2 cut(s) 1024, 1226
Tru1I TTAA 6 cut(s) 161, 194, 638, 914, 1421, 1765
Tru9I TTAA 6 cut(s) 161, 194, 638, 914, 1421, 1765
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 1093
Van91I CCANNNNNTGG 2 cut(s) 1137, 1322
XapI RAATTY 6 cut(s) 443, 509, 1178, 1207, 1362, 1679
XceI RCATGY 2 cut(s) 319, 1220
XcmI CCANNNNNNNNNTGG 2 cut(s) 929, 997
XmiI GTMKAC 2 cut(s) 1301, 1567
XmnI GAANNNNTTC 1 cut(s) 1362
XspI CTAG 3 cut(s) 246, 380, 710
ZrmI AGTACT 2 cut(s) 780, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.