Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318769.1

Orthogroup ID

OG0011000

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 941

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

gggtttcctcgcgaggacattgacatcccagctgtgcgagctgaacggcgtcgtcttgctgaactgaaaaatgattacaaagagattacggagaaattggaccgaaatatacaagttttgcattcggcaaagcttgctccaaaatcatcatccctcaaaccatcagatggtcagagtggttcagttgtcagtgttggagaatcggcatcttcaaccaatgcttcttcgaatgcgatggatgtggatgtgagcgtaccttttgcattggttgatgagatagctgatgcatcaccagcagcagaggatggtttacagcttggagatcagattgtgaaatttggcaatgtagaaaatggtgacaatttgttgcagaaacttgcttctgaggctcaaacgaaacagggttgtgctgtacctgttatggtcttaaggcaaggtgcccaagtcaacttaatggtgacacctagaacatggcaaggcaggggtctgctggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2

Protein Analysis

165

Amino Acids

17.57

Weight (kDa)

5.05

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57950 AT5G57950
fragaria_vesca	FvH4_1g00940 FvH4_1g00940 FvH4_1g00940
malus_domestica	MD02G1007700.v1.1 MD09G1175000.v1.1
prunus_persica	Prupe.7G262800_v2.0.a1
pyrus_communis	pycom02g00660 pycom15g13650
rosa_chinensis	RchiOBHm_Chr2g0085671
rosa_laevigata	RLG00000015710
rosa_multiflora	Rmu_co8318769.1_g000001 Rmu_sc0007631.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155140
rosa_rugosa	Rorug01G0462100
rosa_samantha	Rh2AG011300 Rh2BG011800 Rh2CG012600
rosa_wichuraiana	Rw2G001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	255, 414
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	213
AluBI	AGCT	5 cut(s)	32, 41, 133, 281, 316
AluI	AGCT	5 cut(s)	32, 41, 133, 281, 316
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	282, 368, 469
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	4 cut(s)	161, 169, 229, 299
BceAI	ACGGC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	3 cut(s)	215, 274, 296
Bpu14I	TTCGAA	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	349
BseGI	GGATG	5 cut(s)	24, 149, 244, 250, 310
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	2 cut(s)	28, 490
Bsh1236I	CGCG	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	121, 235
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	322
Bsp68I	TCGCGA	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	349
BssMI	GATC	1 cut(s)	322
BssNI	GRCGYC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	427
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	39, 135
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	5 cut(s)	24, 149, 244, 250, 310
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 134, 293, 386
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	5 cut(s)	24, 149, 244, 250, 310
BtsIMutI	CAGTG	1 cut(s)	196
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	39, 135
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	254, 413
CviAII	CATG	1 cut(s)	471
CviJI	RGCY	6 cut(s)	32, 41, 133, 281, 316, 389
CviKI_1	RGCY	6 cut(s)	32, 41, 133, 281, 316, 389
CviQI	GTAC	2 cut(s)	254, 413
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	1 cut(s)	474
FaiI	YATR	3 cut(s)	110, 422, 472
FatI	CATG	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	5 cut(s)	11, 136, 251, 257, 317
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	1 cut(s)	297
GsaI	CCCAGC	2 cut(s)	32, 494
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	3 cut(s)	282, 368, 469
Hpy166II	GTNNAC	2 cut(s)	311, 448
Hpy188I	TCNGA	4 cut(s)	166, 174, 327, 385
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	311, 448
Hpy99I	CGWCG	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	121, 263, 287, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 134, 293, 386
HpyF3I	CTNAG	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	42, 306, 386, 429, 466, 476
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	3 cut(s)	215, 274, 296
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	356, 457
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	201, 216
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	3 cut(s)	95, 335, 361
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	5 cut(s)	7, 18, 164, 295, 379
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	2 cut(s)	428, 452
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	427
Mva1269I	GAATGC	2 cut(s)	121, 235
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	38, 134, 293, 386
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	356, 457
NruI	TCGCGA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	227
PctI	GAATGC	2 cut(s)	121, 235
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	298
PspFI	CCCAGC	2 cut(s)	28, 490
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	2 cut(s)	255, 414
RsaNI	GTAC	2 cut(s)	254, 413
SaqAI	TTAA	2 cut(s)	428, 452
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	9 cut(s)	34, 43, 135, 259, 283, 318, 418, 439, 466
SfaNI	GCATC	3 cut(s)	215, 274, 296
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	95, 335, 361
SspMI	CTAG	1 cut(s)	465
TaqI	TCGA	1 cut(s)	227
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	95, 335, 361
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	428, 452
Tru9I	TTAA	2 cut(s)	428, 452
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	356, 457
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	2 cut(s)	356, 457
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.