Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341207.1

Orthogroup ID

OG0009902

Physical Location & Seq

Genomic Coordinates Reverse (-)

112 .. 987

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgccggagctgttcggaatccggctcggcgcagtggtggtcaccgggttcatcctggccaccatgttctggaatctggataatacccctaagggagtccaagaacgcctcgggttcatcgccttcgccatgtccaccaccttctacacctgcgccgacgccttacccgtcttcctccaagaacgctacatcttcatgagagagaccgcctacaatgcctaccgtagatcttcgtacgttctttcacactctctagtggctcttccggcgctggttttcctctccgccgcgttctccgccatcacattctgggcagtgggcctcgacggcgggctgtcggggttcctattctacttcctcatcatcttggcctcgttctgggccggaagctcattcgtcacattcctctccggcgtcgtcccccacgtcatgctcgggtacactatagtcgtggcaatcttagcctacttccttctcttcagtggcttcttcataaaccgtaatagaatcccggactactggatttggttccactacatgtcactagtgaagtacccctacgaggctgtaatgcagaacgagtttcaggacccgactaagtgcttcgtgaggggtgtacagatattcgataatactccgctggcttcggtcccggcggcgctgaaggtgaagcttctgggcagcatgagcgagacgctggggatgacgattacgaggacgacttgcttaacgactgggagtgatttattgaagcagcagggagtgactcagctgagcaagtggaattgcttgtggatcacggtggcgtgggggtttctgttcaggattctcttctatttttcgttgctgattgggagcaagaacaagaggaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

291

Amino Acids

32.94

Weight (kDa)

9.37

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39350 AT3G55090 AT5G13580
fragaria_vesca	FvH4_7g20800
malus_domestica	MD01G1117400.v1.1 MD07G1184900.v1.1
prunus_persica	Prupe.2G224800_v2.0.a1
pyrus_communis	pycom01g14510 pycom07g17710
rosa_chinensis	RchiOBHm_Chr1g0365031
rosa_laevigata	RLG00000027449
rosa_multiflora	Rmu_co8341207.1_g000001 Rmu_ssc0000112.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291530 Rroxscaffold_4G00291980
rosa_rugosa	Rorug01G0319000
rosa_samantha	Rh1AG328100 Rh1BG289500 Rh1CG306100 Rh1DG320900
rosa_wichuraiana	Rw1G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccII	CGCG	1 cut(s)	290
AciI	CCGC	7 cut(s)	207, 285, 288, 297, 330, 638, 656
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	463, 683
AcyI	GRCGYC	2 cut(s)	159, 414
AfaI	GTAC	4 cut(s)	236, 440, 554, 618
AfiI	CCNNNNNNNGG	3 cut(s)	69, 378, 562
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	1 cut(s)	751
AhlI	ACTAGT	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	10, 390, 673, 772
AluI	AGCT	4 cut(s)	10, 390, 673, 772
Alw26I	GTCTC	2 cut(s)	197, 686
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	2 cut(s)	110, 434
AoxI	GGCC	4 cut(s)	57, 319, 369, 381
ApeKI	GCWGC	2 cut(s)	681, 754
AspLEI	GCGC	4 cut(s)	32, 155, 271, 661
AspS9I	GGNCC	4 cut(s)	319, 381, 589, 649
AsuC2I	CCSGG	3 cut(s)	46, 512, 653
AsuHPI	GGTGA	2 cut(s)	34, 679
AvaI	CYCGRG	2 cut(s)	110, 434
AvaII	GGWCC	2 cut(s)	589, 649
AxyI	CCTNAGG	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	693, 766
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	46, 512, 653
BcoDI	GTCTC	2 cut(s)	197, 686
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	2 cut(s)	254, 545
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	272, 662
BfuAI	ACCTGC	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	4 cut(s)	288, 657, 682, 755
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	4 cut(s)	289, 658, 683, 756
Bme1390I	CCNGG	4 cut(s)	46, 56, 512, 653
Bme18I	GGWCC	2 cut(s)	589, 649
BmeT110I	CYCGRG	2 cut(s)	110, 434
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	4 cut(s)	319, 381, 589, 649
BmiI	GGNNCC	4 cut(s)	344, 530, 591, 651
BmrFI	CCNGG	4 cut(s)	46, 56, 512, 653
BmrI	ACTGGG	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	773
BpuMI	CCSGG	3 cut(s)	46, 512, 653
BsaHI	GRCGYC	2 cut(s)	159, 414
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 378, 562
Bse1I	ACTGG	2 cut(s)	524, 739
Bse21I	CCTNAGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	51, 708
BseLI	CCNNNNNNNGG	3 cut(s)	69, 378, 562
BseMII	CTCAG	2 cut(s)	764, 782
BseNI	ACTGG	2 cut(s)	524, 739
BseXI	GCAGC	2 cut(s)	693, 766
BseYI	CCCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	4 cut(s)	59, 321, 371, 383
BsiHKCI	CYCGRG	2 cut(s)	110, 434
BsiSI	CCGG	8 cut(s)	5, 22, 45, 266, 384, 411, 512, 653
BsiWI	CGTACG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	404, 635
BslI	CCNNNNNNNGG	3 cut(s)	69, 378, 562
BsmAI	GTCTC	2 cut(s)	197, 686
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	2 cut(s)	404, 635
BsnI	GGCC	4 cut(s)	59, 321, 371, 383
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	110, 434
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	227, 795
Bsp1720I	GCTNAGC	1 cut(s)	773
BspACI	CCGC	7 cut(s)	207, 285, 288, 297, 330, 638, 656
BspANI	GGCC	4 cut(s)	59, 321, 371, 383
BspCNI	CTCAG	2 cut(s)	765, 781
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	344, 530, 591, 651
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	803
BspQI	GCTCTTC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	524, 739
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	227, 795
BssNI	GRCGYC	2 cut(s)	159, 414
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	224, 500, 802
Bst6I	CTCTTC	3 cut(s)	267, 482, 836
BstACI	GRCGYC	2 cut(s)	159, 414
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	332, 642
BstDEI	CTNAG	5 cut(s)	90, 460, 597, 768, 773
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	51, 708
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	2 cut(s)	272, 662
BstHHI	GCGC	4 cut(s)	32, 155, 271, 661
BstKTI	GATC	2 cut(s)	230, 798
BstMAI	GTCTC	2 cut(s)	197, 686
BstMBI	GATC	2 cut(s)	227, 795
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 266, 296, 327, 461, 687
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	4 cut(s)	44, 54, 510, 651
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	693, 766
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	59, 321, 371, 383
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	51, 708
BtsI	GCAGTG	2 cut(s)	39, 321
BtsIMutI	CAGTG	3 cut(s)	39, 321, 487
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	332, 642
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	4 cut(s)	32, 155, 271, 661
Cfr13I	GGNCC	4 cut(s)	319, 381, 589, 649
CseI	GACGC	3 cut(s)	167, 403, 703
Csp6I	GTAC	4 cut(s)	235, 439, 553, 617
CviAII	CATG	6 cut(s)	64, 130, 196, 430, 538, 685
CviQI	GTAC	4 cut(s)	235, 439, 553, 617
DdeI	CTNAG	5 cut(s)	90, 460, 597, 768, 773
DpnI	GATC	2 cut(s)	229, 797
DpnII	GATC	2 cut(s)	227, 795
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	267, 482, 836
EarI	CTCTTC	3 cut(s)	267, 482, 836
EciI	GGCGGA	2 cut(s)	274, 286
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	589, 649
Eco57I	CTGAAG	2 cut(s)	463, 683
Eco81I	CCTNAGG	1 cut(s)	90
Eco88I	CYCGRG	2 cut(s)	110, 434
Eco91I	GGTNACC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	6 cut(s)	67, 133, 199, 433, 541, 688
FaiI	YATR	8 cut(s)	65, 131, 197, 431, 446, 494, 539, 686
FaqI	GGGAC	2 cut(s)	404, 635
FatI	CATG	6 cut(s)	63, 129, 195, 429, 537, 684
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	4 cut(s)	288, 657, 682, 755
FokI	GGATG	2 cut(s)	38, 715
Fsp4HI	GCNGC	4 cut(s)	288, 657, 682, 755
FspBI	CTAG	2 cut(s)	254, 545
GlaI	GCGC	4 cut(s)	31, 154, 270, 660
GluI	GCNGC	4 cut(s)	288, 657, 682, 755
GsaI	CCCAGC	1 cut(s)	701
HaeII	RGCGCY	2 cut(s)	272, 662
HaeIII	GGCC	4 cut(s)	59, 321, 371, 383
HapII	CCGG	8 cut(s)	5, 22, 45, 266, 384, 411, 512, 653
HgaI	GACGC	3 cut(s)	167, 403, 703
HhaI	GCGC	4 cut(s)	32, 155, 271, 661
Hin1I	GRCGYC	2 cut(s)	159, 414
Hin1II	CATG	6 cut(s)	67, 133, 199, 433, 541, 688
Hin6I	GCGC	4 cut(s)	30, 153, 269, 659
HinP1I	GCGC	4 cut(s)	30, 153, 269, 659
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	6 cut(s)	18, 73, 96, 507, 766, 826
HpaII	CCGG	8 cut(s)	5, 22, 45, 266, 384, 411, 512, 653
HphI	GGTGA	2 cut(s)	34, 679
Hpy166II	GTNNAC	3 cut(s)	135, 441, 617
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	6 cut(s)	70, 77, 196, 587, 607, 823
Hpy8I	GTNNAC	3 cut(s)	135, 441, 617
Hpy99I	CGWCG	3 cut(s)	161, 329, 419
HpyAV	CCTTC	4 cut(s)	133, 151, 482, 658
HpyCH4III	ACNGT	3 cut(s)	224, 500, 802
HpyCH4IV	ACGT	2 cut(s)	237, 426
HpyCH4V	TGCA	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 266, 296, 327, 461, 687
HpyF3I	CTNAG	5 cut(s)	90, 460, 597, 768, 773
HpySE526I	ACGT	2 cut(s)	237, 426
Hsp92I	GRCGYC	2 cut(s)	159, 414
Hsp92II	CATG	6 cut(s)	67, 133, 199, 433, 541, 688
HspAI	GCGC	4 cut(s)	30, 153, 269, 659
Kzo9I	GATC	2 cut(s)	227, 795
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	7, 855
Lsp1109I	GCAGC	2 cut(s)	693, 766
MaeI	CTAG	2 cut(s)	254, 545
MaeII	ACGT	2 cut(s)	237, 426
MaeIII	GTNAC	4 cut(s)	40, 397, 540, 763
MalI	GATC	2 cut(s)	229, 797
MboI	GATC	2 cut(s)	227, 795
MboII	GAAGA	7 cut(s)	163, 184, 222, 254, 469, 481, 823
MflI	RGATCY	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	1 cut(s)	784
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	105, 760
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	728
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	640, 772
MspI	CCGG	8 cut(s)	5, 22, 45, 266, 384, 411, 512, 653
MspR9I	CCNGG	4 cut(s)	46, 56, 512, 653
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	6 cut(s)	215, 266, 296, 327, 461, 687
NciI	CCSGG	3 cut(s)	46, 512, 653
NdeII	GATC	2 cut(s)	227, 795
NlaIII	CATG	6 cut(s)	67, 133, 199, 433, 541, 688
NlaIV	GGNNCC	4 cut(s)	344, 530, 591, 651
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	4 cut(s)	40, 397, 540, 763
NspI	RCATGY	1 cut(s)	541
PagI	TCATGA	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	158
PciI	ACATGT	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 423
PfeI	GAWTC	4 cut(s)	18, 73, 507, 826
Pfl23II	CGTACG	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	4 cut(s)	289, 658, 683, 756
PleI	GAGTC	2 cut(s)	104, 760
PpsI	GAGTC	2 cut(s)	104, 760
PpuMI	RGGWCCY	1 cut(s)	589
PscI	ACATGT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	54
PspEI	GGTNACC	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	54
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	344, 530, 591, 651
PspPI	GGNCC	4 cut(s)	319, 381, 589, 649
PspPPI	RGGWCCY	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	4 cut(s)	236, 440, 554, 618
RsaNI	GTAC	4 cut(s)	235, 439, 553, 617
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	728
SatI	GCNGC	4 cut(s)	288, 657, 682, 755
Sau3AI	GATC	2 cut(s)	227, 795
Sau96I	GGNCC	4 cut(s)	319, 381, 589, 649
SchI	GAGTC	2 cut(s)	105, 760
ScrFI	CCNGG	4 cut(s)	46, 56, 512, 653
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	589, 649
SmiMI	CAYNNNNRTG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	1 cut(s)	784
SsiI	CCGC	7 cut(s)	207, 285, 288, 297, 330, 638, 656
SspMI	CTAG	2 cut(s)	254, 545
StyD4I	CCNGG	4 cut(s)	44, 54, 510, 651
TaaI	ACNGT	3 cut(s)	224, 500, 802
TaiI	ACGT	2 cut(s)	240, 429
TaqI	TCGA	2 cut(s)	324, 627
TaqII	GACCGA	1 cut(s)	637
TasI	AATT	1 cut(s)	784
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	2 cut(s)	290, 659
TfiI	GAWTC	4 cut(s)	18, 73, 507, 826
Tru1I	TTAA	1 cut(s)	728
Tru9I	TTAA	1 cut(s)	728
TscAI	CASTG	3 cut(s)	39, 321, 487
TseFI	GTSAC	4 cut(s)	40, 397, 540, 763
TseI	GCWGC	2 cut(s)	681, 754
Tsp45I	GTSAC	4 cut(s)	40, 397, 540, 763
TspDTI	ATGAA	4 cut(s)	40, 106, 184, 481
TspRI	CASTG	3 cut(s)	39, 321, 487
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	589, 649
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	2 cut(s)	254, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.