Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009902

Physical Location & Seq

Genomic Coordinates Reverse (-)

54693550 .. 54696967

Gene Structure 3418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGTCTCGGGTAGCAGCAGAGAATCAGATATCGCCGTTTTTCTCTATGGAGCTCGACGACTTCCCACGCGCCTCCCACGGCGCGTCACCCTCACTCGGCCAGCTTCTGAAGCACGTCGGAGATGTCCGCAAGGAGGCCACCGGAGACGGCGGCGAGACTCCGTTGCATCACCACCAGGTTCTTGACATGGGCGACGAGAGTCTTGAAAACCCGAGGTCGCTTCCGTTCGTGCTCTCGTTCACTAACCTGACTTACAGCGTCAAGATTCGCCGGAAGTTCAGTCTTTCCGGGATGTTTACTGGCCAGAACAACCGTCTCGGCGCTGCGACGCTGTCGGAGCCCGTCGGAGGGGAGAGCCTGTTCACGAGGACCAAGACGCTGCTGAACGACATCTCCGGCGAGGCTAGAGAAGGAGAAGTGCTGGCTGTGCTCGGCGCCAGCGGTTCCGGCAAGTCGACTCTCATCGACGCCTTGGCCAATCGCATCGCCAAGGGAAGCCTGAAAGGAAAGGTCAGCCTCAACGGCGAGGTCCTGGAGTCGCGGCTGCTCAAAGTGATCTCAGCTTACGTCATGCAGGACGATCTGCTATTCCCGATGCTGACGGTGGAGGAAACGCTCATGTTCGCCGCCGAGTTCCGCCTCCCTAGGGCGCTCTCGAAATCCAAGAAGAAAATGCGGGTCCAGGCGCTGATAGACCAGCTCGGCCTCCGCAACGCGGCCAGCACCATCATCGGCGACGAGGGCCACCGCGGCGTCTCCGGAGGAGAGCGCCGCCGCGTCTCGATCGGAATCGACATCGTCCACGACCCGATCATCCTCTTCCTCGACGAGCCGACCTCCGGCCTCGACTCCACCTCCGCCTTCATGGTCGTCAAGGTCCTCCAGCGGATCGCTCAGTCCGGCAGCATTGTGGTCTTGTCCGTACACCAGCCGAGCTACAGAATCTTGGGCCTGCTGGACCGCCTCCTCTTCCTCAGCCGCGGCCAAACCGTCTTCAGCGGCTCGCCAGCTCAGCTTCCCTCCTACTTCGCCGAGTTCGGGCGGCCCATACCCGACTCCGAAAACAAAACCGAGTTCGCTCTGGACCTGATCCGAGAACTGGAAGGCTCCCCCGGCGGGACCCAATCCCTTGTCGAGTTCAACAGCTCCTGGCAGACCATGAAGCACAGCGCTCACTACCGCTCCACTACCGACATACGACACGTTGTTCCTCTCCAAGAAGCCATCTCCGCCAGCATTTCCCGAGGCAAGCTCGTCTCCGGCGCCACCAACAACGACGCCAGCCCAAACTCCATGGTCCCCACCTTCGCCAACCCCATCTGGATCGAAATGGCCGTCCTCGCGAGACGCTCCATGAAAAACTCGAGACGAATGCCGGAGCTGTTCGGAATCCGGCTCGGCGCAGTCGTGGTCACCGGGTTCATCCTCGCCACCATGTTCTGGAATCTCGATAATACCCCTAAGGGAGTCCAAGAACGCCTAGGGTTCATTGCCTTCGCCATGTCCACCACCTTCTACACCTGCGCCGACGCCTTACCCGTCTTCCTCCAAGAACGCTACATCTTCATGAGAGAGACCGCCTACAATGCCTACCGTAGATCTTCCTACGTTCTTTCACACTCTCTAGTGGCTCTTCCGGCGCTGGTTTTCCTCTCCGCCGCGTTCTCCGCCATCACATTCTGGGCCGTGGGCCTCGACGGCGGGCTCTCGGGGTTCCTATTCTACTTCCTCATCATCTTCGCCTCGTTCTGGGCCGGAAGCTCATTCGTCACCTTCCTCTCCGGCGTCGTCCCCCACGTCATGCTCGGCTACACTATAGTCGTGGCAATCTTAGCCTACTTCCTTCTCTTCAGTGGCTTCTTCATAAACCGTAACAGAATCCCGGACTACTGGATTTGGTTCCACTACATGTCACTAGTCAAGTACCCCTACGAGGCTGTAATGCAGAACGAGTTTCAGGACCCGACTAAGTGCTTCGTGAGGGGTGTACAGATATTTGATAATACTCCTCTGGCTTCGGTCCCGGCAGCGCTAAAGGTGAAGCTTCTGGGAAGCATGAGCGAGACGCTGGGGATGACGATTACGAGGACGACTTGCTTGACGACTGGGAGTGATTTATTGAAGCAGCAGGGAGTGACTCAGCTGAGCAAGTGGAATTGCTTGTGGATCACGGTGGCCTGGGGGTTTCTGTTCAGGATTCTCTTCTATTTTTCGTTGCTGATTGGGAGCAAGAACAAGAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

748

Amino Acids

82.68

Weight (kDa)

9.28

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	128 - 280	7.1e-26	ABC transporter
ABC2_membrane_7	PF19055	309 - 444	1.4e-06	ABC-2 type transporter
ABC2_membrane	PF01061	445 - 652	5.5e-49	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39350 AT3G55090 AT5G13580
fragaria_vesca	FvH4_7g20800
malus_domestica	MD01G1117400.v1.1 MD07G1184900.v1.1
prunus_persica	Prupe.2G224800_v2.0.a1
pyrus_communis	pycom01g14510 pycom07g17710
rosa_chinensis	RchiOBHm_Chr1g0365031
rosa_laevigata	RLG00000027449
rosa_multiflora	Rmu_co8341207.1_g000001 Rmu_ssc0000112.1_g000014
rosa_roxburghii	Rroxscaffold_4G00291530 Rroxscaffold_4G00291980
rosa_rugosa	Rorug01G0319000
rosa_samantha	Rh1AG328100 Rh1BG289500 Rh1CG306100 Rh1DG320900
rosa_wichuraiana	Rw1G029110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1529
Acc36I	ACCTGC	1 cut(s)	1529
AccB1I	GGYRCC	2 cut(s)	434, 1262
AccB7I	CCANNNNNTGG	1 cut(s)	1440
AccBSI	CCGCTC	1 cut(s)	1182
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
AccIII	TCCGGA	1 cut(s)	758
AclWI	GGATC	4 cut(s)	896, 1084, 1331, 2174
AcoI	YGGCCR	6 cut(s)	97, 301, 474, 717, 982, 1332
AcuI	CTGAAG	3 cut(s)	128, 979, 1834
AcyI	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
AfaI	GTAC	3 cut(s)	924, 1925, 1989
AfeI	AGCGCT	2 cut(s)	1171, 2031
AflIII	ACRYGT	2 cut(s)	1201, 1908
AgsI	TTSAA	3 cut(s)	206, 1141, 2122
AhlI	ACTAGT	1 cut(s)	1915
AjiI	CACGTC	2 cut(s)	115, 1798
AjnI	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
AloI	GAACNNNNNNTCC	4 cut(s)	344, 376, 377, 409
Alw21I	GWGCWC	3 cut(s)	54, 234, 432
AlwI	GGATC	4 cut(s)	896, 1084, 1331, 2174
AlwNI	CAGNNNCTG	3 cut(s)	106, 688, 1149
Ama87I	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
Aor13HI	TCCGGA	1 cut(s)	758
Aor51HI	AGCGCT	2 cut(s)	1171, 2031
ApeKI	GCWGC	7 cut(s)	14, 323, 379, 544, 903, 2027, 2125
ArsI	GACNNNNNNTTYG	2 cut(s)	1320, 1352
AspA2I	CCTAGG	2 cut(s)	644, 1480
AsuC2I	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
AsuHPI	GGTGA	5 cut(s)	78, 161, 1405, 1762, 2050
AvaI	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
AvrII	CCTAGG	2 cut(s)	644, 1480
AxyI	CCTNAGG	1 cut(s)	1461
BalI	TGGCCA	2 cut(s)	303, 476
BanI	GGYRCC	2 cut(s)	434, 1262
BanII	GRGCYC	3 cut(s)	54, 342, 1707
BauI	CACGAG	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	985, 1534
Bbv12I	GWGCWC	3 cut(s)	54, 234, 432
BbvCI	CCTCAGC	1 cut(s)	974
BbvI	GCAGC	7 cut(s)	26, 310, 366, 531, 915, 2039, 2137
BccI	CCATC	4 cut(s)	734, 1232, 1325, 1679
BceAI	ACGGC	7 cut(s)	19, 94, 163, 538, 1319, 1670, 1714
BcgI	CGANNNNNNTGC	4 cut(s)	712, 746, 1354, 1388
BciT130I	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BcnI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
BcuI	ACTAGT	1 cut(s)	1915
BfaI	CTAG	5 cut(s)	405, 645, 1481, 1625, 1916
BfmI	CTRYAG	2 cut(s)	937, 1815
BfoI	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1173, 1266, 1643, 2033
BfuAI	ACCTGC	1 cut(s)	1529
BglI	GCCNNNNNGGC	3 cut(s)	522, 750, 1698
BglII	AGATCT	1 cut(s)	1598
BlnI	CCTAGG	2 cut(s)	644, 1480
BlpI	GCTNAGC	2 cut(s)	1011, 2144
BmeT110I	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
BmgBI	CACGTC	2 cut(s)	115, 1798
BmrI	ACTGGG	1 cut(s)	2115
BmsI	GCATC	3 cut(s)	175, 492, 585
BmuI	ACTGGG	1 cut(s)	2115
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	985, 1534
BplI	GAGNNNNNCTC	4 cut(s)	821, 853, 1236, 1268
BpmI	CTGGAG	2 cut(s)	554, 866
Bpu10I	CCTNAGC	1 cut(s)	974
Bpu1102I	GCTNAGC	2 cut(s)	1011, 2144
BpuMI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
BsaBI	GATNNNNATC	1 cut(s)	788
BsaHI	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
BsaI	GGTCTC	1 cut(s)	1568
BsaWI	WCCGGW	2 cut(s)	140, 758
BsaXI	ACNNNNNCTCC	8 cut(s)	344, 374, 377, 407, 839, 869, 1166, 1196
Bse1I	ACTGG	4 cut(s)	304, 1104, 1895, 2110
Bse21I	CCTNAGG	1 cut(s)	1461
Bse3DI	GCAATG	1 cut(s)	1488
Bse8I	GATNNNNATC	1 cut(s)	788
BseAI	TCCGGA	1 cut(s)	758
BseBI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BseGI	GGATG	4 cut(s)	297, 813, 1422, 2079
BseJI	GATNNNNATC	1 cut(s)	788
BseMI	GCAATG	1 cut(s)	1488
BseMII	CTCAG	6 cut(s)	573, 908, 988, 1025, 2135, 2153
BseNI	ACTGG	4 cut(s)	304, 1104, 1895, 2110
BseRI	GAGGAG	3 cut(s)	777, 956, 1998
BseXI	GCAGC	7 cut(s)	26, 310, 366, 531, 915, 2039, 2137
BseYI	CCCAGC	1 cut(s)	2068
Bsh1236I	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
Bsh1285I	CGRYCG	1 cut(s)	786
BshNI	GGYRCC	2 cut(s)	434, 1262
BsiEI	CGRYCG	1 cut(s)	786
BsiHKAI	GWGCWC	3 cut(s)	54, 234, 432
BsiHKCI	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
BslFI	GGGAC	4 cut(s)	1132, 1283, 1775, 2006
BsmBI	CGTCTC	8 cut(s)	138, 320, 760, 784, 1261, 1339, 1360, 2057
BsmFI	GGGAC	4 cut(s)	1132, 1283, 1775, 2006
BsmI	GAATGC	1 cut(s)	1377
Bso31I	GGTCTC	1 cut(s)	1568
BsoBI	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
Bsp1286I	GDGCHC	5 cut(s)	54, 234, 342, 432, 1707
Bsp13I	TCCGGA	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	1987
Bsp143I	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
Bsp1720I	GCTNAGC	2 cut(s)	1011, 2144
Bsp19I	CCATGG	1 cut(s)	1293
Bsp68I	TCGCGA	1 cut(s)	1343
BspCNI	CTCAG	6 cut(s)	572, 907, 987, 1024, 2136, 2152
BspEI	TCCGGA	1 cut(s)	758
BspFNI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BspHI	TCATGA	1 cut(s)	1566
BspMI	ACCTGC	1 cut(s)	1529
BspPI	GGATC	4 cut(s)	896, 1084, 1331, 2174
BspQI	GCTCTTC	1 cut(s)	1638
BspT107I	GGYRCC	2 cut(s)	434, 1262
BspTNI	GGTCTC	1 cut(s)	1568
BsrBI	CCGCTC	1 cut(s)	1182
BsrDI	GCAATG	1 cut(s)	1488
BsrGI	TGTACA	1 cut(s)	1987
BsrI	ACTGG	4 cut(s)	304, 1104, 1895, 2110
BssMI	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
BssNI	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
BssSI	CACGAG	1 cut(s)	364
BssT1I	CCWWGG	5 cut(s)	471, 489, 644, 1293, 1480
Bst2BI	CACGAG	1 cut(s)	364
Bst2UI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
Bst4CI	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
Bst6I	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
BstACI	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
BstAUI	TGTACA	1 cut(s)	1987
BstDEI	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
BstDSI	CCRYGG	5 cut(s)	76, 748, 979, 1293, 1686
BstEII	GGTNACC	1 cut(s)	1411
BstF5I	GGATG	4 cut(s)	297, 813, 1422, 2079
BstFNI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BstH2I	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1173, 1266, 1643, 2033
BstKTI	GATC	9 cut(s)	558, 583, 786, 813, 891, 1092, 1326, 1601, 2169
BstMBI	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
BstMCI	CGRYCG	1 cut(s)	786
BstNI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BstNSI	RCATGY	1 cut(s)	1912
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	1411
BstSFI	CTRYAG	2 cut(s)	937, 1815
BstUI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BstV1I	GCAGC	7 cut(s)	26, 310, 366, 531, 915, 2039, 2137
BstV2I	GAAGAC	2 cut(s)	985, 1534
BstX2I	RGATCY	1 cut(s)	1598
BstYI	RGATCY	1 cut(s)	1598
Bsu36I	CCTNAGG	1 cut(s)	1461
BtgI	CCRYGG	5 cut(s)	76, 748, 979, 1293, 1686
BtgZI	GCGATG	1 cut(s)	469
BtrI	CACGTC	2 cut(s)	115, 1798
BtsCI	GGATG	4 cut(s)	297, 813, 1422, 2079
BtsIMutI	CAGTG	1 cut(s)	1858
BtuMI	TCGCGA	1 cut(s)	1343
BveI	ACCTGC	1 cut(s)	1529
CaiI	CAGNNNCTG	3 cut(s)	106, 688, 1149
CciI	TCATGA	1 cut(s)	1566
Cfr42I	CCGCGG	2 cut(s)	751, 982
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	3 cut(s)	923, 1924, 1988
CviQI	GTAC	3 cut(s)	923, 1924, 1988
DdeI	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
DinI	GGCGCC	2 cut(s)	436, 1264
DpnI	GATC	9 cut(s)	557, 582, 785, 812, 890, 1091, 1325, 1600, 2168
DpnII	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
EaeI	YGGCCR	6 cut(s)	97, 301, 474, 717, 982, 1332
Eam1104I	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
EarI	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
EciI	GGCGGA	5 cut(s)	626, 847, 1219, 1645, 1657
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	5 cut(s)	471, 489, 644, 1293, 1480
Eco24I	GRGCYC	3 cut(s)	54, 342, 1707
Eco31I	GGTCTC	1 cut(s)	1568
Eco32I	GATATC	1 cut(s)	30
Eco47III	AGCGCT	2 cut(s)	1171, 2031
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	3 cut(s)	128, 979, 1834
Eco81I	CCTNAGG	1 cut(s)	1461
Eco88I	CYCGRG	5 cut(s)	6, 211, 1242, 1363, 1708
Eco91I	GGTNACC	1 cut(s)	1411
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	4 cut(s)	529, 877, 1119, 1960
EcoO65I	GGTNACC	1 cut(s)	1411
EcoRII	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
EcoRV	GATATC	1 cut(s)	30
EcoT14I	CCWWGG	5 cut(s)	471, 489, 644, 1293, 1480
EcoT38I	GRGCYC	3 cut(s)	54, 342, 1707
EgeI	GGCGCC	2 cut(s)	436, 1264
EheI	GGCGCC	2 cut(s)	436, 1264
ErhI	CCWWGG	5 cut(s)	471, 489, 644, 1293, 1480
Esp3I	CGTCTC	8 cut(s)	138, 320, 760, 784, 1261, 1339, 1360, 2057
FaqI	GGGAC	4 cut(s)	1132, 1283, 1775, 2006
FauI	CCCGC	3 cut(s)	669, 1109, 1694
FblI	GTMKAC	1 cut(s)	455
FokI	GGATG	4 cut(s)	304, 800, 1409, 2086
FriOI	GRGCYC	3 cut(s)	54, 342, 1707
FspBI	CTAG	5 cut(s)	405, 645, 1481, 1625, 1916
GsaI	CCCAGC	1 cut(s)	2072
GsuI	CTGGAG	2 cut(s)	554, 866
HaeII	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1173, 1266, 1643, 2033
Hin1I	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	2042
HphI	GGTGA	5 cut(s)	78, 161, 1405, 1762, 2050
Hpy166II	GTNNAC	8 cut(s)	240, 297, 363, 456, 802, 925, 1506, 1988
Hpy188I	TCNGA	9 cut(s)	27, 108, 119, 337, 347, 788, 1060, 1094, 1388
Hpy8I	GTNNAC	8 cut(s)	240, 297, 363, 456, 802, 925, 1506, 1988
HpyAV	CCTTC	8 cut(s)	404, 871, 1097, 1315, 1504, 1522, 1783, 1853
HpyCH4III	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
HpyCH4IV	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
HpyCH4V	TGCA	3 cut(s)	166, 574, 1945
HpyF3I	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
HpySE526I	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
Hsp92I	GRCGYC	7 cut(s)	435, 468, 753, 1263, 1278, 1530, 1785
KasI	GGCGCC	2 cut(s)	434, 1262
KflI	GGGWCCC	1 cut(s)	1119
Kpn2I	TCCGGA	1 cut(s)	758
KspI	CCGCGG	2 cut(s)	751, 982
Kzo9I	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
LguI	GCTCTTC	1 cut(s)	1638
LmnI	GCTCC	8 cut(s)	49, 337, 1112, 1151, 1187, 1355, 1378, 2226
Lsp1109I	GCAGC	7 cut(s)	26, 310, 366, 531, 915, 2039, 2137
LweI	GCATC	3 cut(s)	175, 492, 585
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	5 cut(s)	405, 645, 1481, 1625, 1916
MaeII	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
MaeIII	GTNAC	6 cut(s)	84, 1411, 1768, 1871, 1911, 2134
MalI	GATC	9 cut(s)	557, 582, 785, 812, 890, 1091, 1325, 1600, 2168
MbiI	CCGCTC	1 cut(s)	1182
MboI	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
MflI	RGATCY	1 cut(s)	1598
MhlI	GDGCHC	5 cut(s)	54, 234, 342, 432, 1707
MlsI	TGGCCA	2 cut(s)	303, 476
MluCI	AATT	1 cut(s)	2155
MluNI	TGGCCA	2 cut(s)	303, 476
Mly113I	GGCGCC	2 cut(s)	435, 1263
MlyI	GAGTC	8 cut(s)	151, 208, 451, 545, 842, 1049, 1476, 2131
MmeI	TCCRAC	3 cut(s)	97, 315, 325
Mox20I	TGGCCA	2 cut(s)	303, 476
MroI	TCCGGA	1 cut(s)	758
MscI	TGGCCA	2 cut(s)	303, 476
MslI	CAYNNNNRTG	1 cut(s)	1565
Msp20I	TGGCCA	2 cut(s)	303, 476
MspA1I	CMGCKG	6 cut(s)	441, 750, 886, 981, 999, 2143
Mva1269I	GAATGC	1 cut(s)	1377
MvaI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
MvnI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
NarI	GGCGCC	2 cut(s)	435, 1263
NciI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
NcoI	CCATGG	1 cut(s)	1293
NdeII	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
NmeAIII	GCCGAG	9 cut(s)	75, 297, 411, 655, 681, 957, 1057, 1377, 1785
NmuCI	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
NruI	TCGCGA	1 cut(s)	1343
NspI	RCATGY	1 cut(s)	1912
PaeR7I	CTCGAG	1 cut(s)	1363
PagI	TCATGA	1 cut(s)	1566
PaqCI	CACCTGC	1 cut(s)	1529
PciI	ACATGT	1 cut(s)	1908
PciSI	GCTCTTC	1 cut(s)	1638
PcsI	WCGNNNNNNNCGW	4 cut(s)	1332, 1404, 1536, 1794
PctI	GAATGC	1 cut(s)	1377
PfeI	GAWTC	8 cut(s)	22, 265, 789, 942, 1389, 1444, 1878, 2197
PflFI	GACNNNGTC	2 cut(s)	331, 797
PflMI	CCANNNNNTGG	1 cut(s)	1440
PfoI	TCCNGGA	3 cut(s)	287, 531, 1881
Ple19I	CGATCG	1 cut(s)	786
PleI	GAGTC	8 cut(s)	151, 207, 451, 544, 842, 1049, 1475, 2131
PluTI	GGCGCC	2 cut(s)	438, 1266
PpsI	GAGTC	8 cut(s)	151, 207, 451, 544, 842, 1049, 1475, 2131
PpuMI	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
PscI	ACATGT	1 cut(s)	1908
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
Psp6I	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
PspEI	GGTNACC	1 cut(s)	1411
PspFI	CCCAGC	1 cut(s)	2068
PspGI	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
PspPPI	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
PstNI	CAGNNNCTG	3 cut(s)	106, 688, 1149
PsuI	RGATCY	1 cut(s)	1598
PsyI	GACNNNGTC	2 cut(s)	331, 797
PvuI	CGATCG	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	2143
RruI	TCGCGA	1 cut(s)	1343
RsaI	GTAC	3 cut(s)	924, 1925, 1989
RsaNI	GTAC	3 cut(s)	923, 1924, 1988
RseI	CAYNNNNRTG	1 cut(s)	1565
SacI	GAGCTC	1 cut(s)	54
SacII	CCGCGG	2 cut(s)	751, 982
SalI	GTCGAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	1638
Sau3AI	GATC	9 cut(s)	555, 580, 783, 810, 888, 1089, 1323, 1598, 2166
SchI	GAGTC	8 cut(s)	151, 208, 451, 545, 842, 1049, 1476, 2131
SduI	GDGCHC	5 cut(s)	54, 234, 342, 432, 1707
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	3 cut(s)	175, 492, 585
SfcI	CTRYAG	2 cut(s)	937, 1815
SfoI	GGCGCC	2 cut(s)	436, 1264
Sfr274I	CTCGAG	1 cut(s)	1363
Sfr303I	CCGCGG	2 cut(s)	751, 982
SgrBI	CCGCGG	2 cut(s)	751, 982
SlaI	CTCGAG	1 cut(s)	1363
SmiMI	CAYNNNNRTG	1 cut(s)	1565
SmlI	CTYRAG	1 cut(s)	1363
SmoI	CTYRAG	1 cut(s)	1363
SpeI	ACTAGT	1 cut(s)	1915
Sse9I	AATT	1 cut(s)	2155
SspDI	GGCGCC	2 cut(s)	434, 1262
SspMI	CTAG	5 cut(s)	405, 645, 1481, 1625, 1916
SstI	GAGCTC	1 cut(s)	54
StyI	CCWWGG	5 cut(s)	471, 489, 644, 1293, 1480
TaaI	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
TaiI	ACGT	5 cut(s)	117, 570, 1206, 1611, 1800
TaqII	GACCGA	1 cut(s)	2008
TasI	AATT	1 cut(s)	2155
TatI	WGTACW	1 cut(s)	1987
TfiI	GAWTC	8 cut(s)	22, 265, 789, 942, 1389, 1444, 1878, 2197
TscAI	CASTG	1 cut(s)	1858
TseFI	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
TseI	GCWGC	7 cut(s)	14, 323, 379, 544, 903, 2027, 2125
Tsp45I	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
TspDTI	ATGAA	7 cut(s)	853, 1175, 1370, 1411, 1477, 1555, 1852
TspGWI	ACGGA	3 cut(s)	150, 213, 910
TspRI	CASTG	1 cut(s)	1858
Tth111I	GACNNNGTC	2 cut(s)	331, 797
Van91I	CCANNNNNTGG	1 cut(s)	1440
XceI	RCATGY	1 cut(s)	1912
XhoI	CTCGAG	1 cut(s)	1363
XmaJI	CCTAGG	2 cut(s)	644, 1480
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	5 cut(s)	405, 645, 1481, 1625, 1916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.