Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344247.1

Orthogroup ID

OG0003448

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 618

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344247.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgctgcggttaggcaaacatctagcttccaagggtttgttggtcactttctccaccactgaagattatgggaataagatgagaaaggctaatggcatcgtcgacaaccaaccttcaccagttggcaatggatttatcaggttcgagttctttgacgacgggcttcctgaccccgaggatccgaggcgaacccagttggacttctacatcccacttcttgagaaagtagggaaggagttggtgactgggatgataaacaagcatggtgaggaaggtggtgtaagagtttcgtgccttgtgaacaacccgttcattccttgggtttgtgatgttgctactgagcttgggatcccttgtgccaccctttggattcagtcttgtgctgtgttctcggcttattaccattacagcgccggggcggtggcgtttccgactgaagctgaaccagacttggatgttcagctgcctagtatgcctcttttgaagcatgatgagattccaagctttttgcatccttttactccctttagggtactaatattgaatatctcttttcaagctattattgttaatactagtgcccatgaaatcatcagtgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

5.16

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15480
fragaria_vesca	FvH4_2g05060 FvH4_2g05090
malus_domestica	MD10G1098500.v1.1 MD10G1115800.v1.1 MD11G1019300.v1.1
prunus_persica	Prupe.8G135700_v2.0.a1 Prupe.8G135800_v2.0.a1
pyrus_communis	pycom10g08440 pycom11g01430
rosa_chinensis	RchiOBHm_Chr6g0254941 RchiOBHm_Chr6g0254951
rosa_laevigata	RLG00000014875 RLG00000014876
rosa_multiflora	Rmu_co8344247.1_g000001 Rmu_sc0000016.1_g000013 Rmu_sc0000016.1_g000022 Rmu_sc0005039.1_g000007 Rmu_sc0028324.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210450 Rroxscaffold_7G00210460
rosa_rugosa	Rorug05G0555600 Rorug05G0555700
rosa_samantha	Rh6AG073000 Rh6AG073200 Rh6BG065200 Rh6BG065400 Rh6CG065000 Rh6CG065100 Rh6CG065200 Rh6DG062000 Rh6DG062200 Rh6DG062300
rosa_wichuraiana	Rw0G002720 Rw6G006360 Rw6G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	2 cut(s)	7, 419
AclWI	GGATC	4 cut(s)	173, 186, 343, 356
AcuI	CTGAAG	2 cut(s)	81, 456
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	3 cut(s)	484, 544, 557
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	6 cut(s)	26, 343, 440, 463, 504, 560
AluI	AGCT	6 cut(s)	26, 343, 440, 463, 504, 560
AlwI	GGATC	4 cut(s)	173, 186, 343, 356
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	4, 463
AspLEI	GCGC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	108, 253, 278
AvaI	CYCGRG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	583
BamHI	GGATCC	2 cut(s)	178, 348
BbvI	GCAGC	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	415
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	3 cut(s)	23, 468, 576
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	2 cut(s)	5, 464
BlsI	GCNGC	2 cut(s)	6, 465
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	180, 350
BmrFI	CCNGG	1 cut(s)	415
BmrI	ACTGGG	2 cut(s)	187, 255
BmsI	GCATC	2 cut(s)	105, 520
BmuI	ACTGGG	2 cut(s)	187, 255
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	5 cut(s)	30, 174, 182, 317, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	3 cut(s)	119, 193, 250
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	5 cut(s)	30, 174, 182, 317, 414
BseGI	GGATG	4 cut(s)	207, 255, 460, 511
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	119, 193, 250
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	178, 348
BspACI	CCGC	2 cut(s)	7, 419
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	180, 350
BspPI	GGATC	4 cut(s)	173, 186, 343, 356
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	119, 193, 250
BssECI	CCNNGG	5 cut(s)	30, 174, 182, 317, 414
BssMI	GATC	2 cut(s)	178, 348
BssT1I	CCWWGG	2 cut(s)	30, 317
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	4 cut(s)	207, 255, 460, 511
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	181, 351
BstMBI	GATC	2 cut(s)	178, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	178, 348
BstYI	RGATCY	2 cut(s)	178, 348
BtsCI	GGATG	4 cut(s)	207, 255, 460, 511
BtsIMutI	CAGTG	2 cut(s)	57, 601
CfoI	GCGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	4 cut(s)	263, 488, 584, 600
CviJI	RGCY	9 cut(s)	26, 89, 163, 343, 395, 440, 463, 504, 560
CviKI_1	RGCY	9 cut(s)	26, 89, 163, 343, 395, 440, 463, 504, 560
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	180, 350
DpnII	GATC	2 cut(s)	178, 348
Eco130I	CCWWGG	2 cut(s)	30, 317
Eco57I	CTGAAG	2 cut(s)	81, 456
Eco88I	CYCGRG	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	30, 317
ErhI	CCWWGG	2 cut(s)	30, 317
FaeI	CATG	4 cut(s)	266, 491, 587, 603
FaiI	YATR	6 cut(s)	69, 264, 473, 489, 585, 601
FatI	CATG	4 cut(s)	262, 487, 583, 599
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	5, 464
FokI	GGATG	4 cut(s)	194, 262, 467, 498
Fsp4HI	GCNGC	2 cut(s)	5, 464
FspBI	CTAG	3 cut(s)	23, 468, 576
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	2 cut(s)	5, 464
HaeII	RGCGCY	1 cut(s)	414
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	266, 491, 587, 603
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	2 cut(s)	370, 496
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	3 cut(s)	108, 253, 278
Hpy166II	GTNNAC	2 cut(s)	103, 301
Hpy188I	TCNGA	2 cut(s)	183, 432
Hpy188III	TCNNGA	2 cut(s)	167, 218
Hpy8I	GTNNAC	2 cut(s)	103, 301
Hpy99I	CGWCG	2 cut(s)	104, 161
HpyAV	CCTTC	3 cut(s)	123, 226, 266
HpyCH4V	TGCA	2 cut(s)	511, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	266, 491, 587, 603
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	178, 348
LpnPI	CCDG	7 cut(s)	124, 132, 180, 206, 231, 427, 459
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	2 cut(s)	105, 520
MaeI	CTAG	3 cut(s)	23, 468, 576
MaeIII	GTNAC	2 cut(s)	43, 241
MalI	GATC	2 cut(s)	180, 350
MboI	GATC	2 cut(s)	178, 348
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	2 cut(s)	178, 348
MhlI	GDGCHC	1 cut(s)	583
MmeI	TCCRAC	2 cut(s)	177, 455
MnlI	CCTC	4 cut(s)	169, 177, 262, 486
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	472
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	178, 348
NlaIII	CATG	4 cut(s)	266, 491, 587, 603
NlaIV	GGNNCC	2 cut(s)	180, 350
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	43, 241
PfeI	GAWTC	2 cut(s)	370, 496
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	6, 465
PspN4I	GGNNCC	2 cut(s)	180, 350
PsuI	RGATCY	2 cut(s)	178, 348
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	2 cut(s)	5, 464
Sau3AI	GATC	2 cut(s)	178, 348
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	9 cut(s)	28, 115, 143, 277, 345, 442, 465, 506, 562
SfaNI	GCATC	2 cut(s)	105, 520
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	575
SsiI	CCGC	2 cut(s)	7, 419
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	3 cut(s)	23, 468, 576
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	2 cut(s)	30, 317
TaqI	TCGA	2 cut(s)	102, 144
TfiI	GAWTC	2 cut(s)	370, 496
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	64, 601
TseFI	GTSAC	2 cut(s)	43, 241
TseI	GCWGC	2 cut(s)	4, 463
Tsp45I	GTSAC	2 cut(s)	43, 241
TspDTI	ATGAA	2 cut(s)	301, 600
TspRI	CASTG	2 cut(s)	64, 601
Van91I	CCANNNNNTGG	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	23, 468, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.