Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003448

Physical Location & Seq

Genomic Coordinates Reverse (-)

6353907 .. 6355474

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGAAAGGTTAATGGCATCATCGACAACCAATCGACACCAGTTGGGAATGGATTTATCAGGTTCGAGTTCTTTGACGACGGGCTTCCTGACCCCGCGGATCCGAGGCGAACCGAGTTTGACTTCTATGTCCCGCTTCTTGAGAAAGTAGGGAAGGAGTTGGTGACTGGGATGATAAACAAGCATGGTGAGGAAGGTGGTGCAAGAGTTTCGTGCCTTGTGAACAACCCGTTCATTCCTTGGGTTTGTGATGTCGCTACTGAGCTTGGGATCCCATGTGCCACGCTTTGGATTCAGTCTTGTGCTGTGTTCTCGGCTTATTACCATTACAATGCCGGGGAGGTGGTGTTTCCGACTGAAGCTGAACCAGACTTGGATGTTCAGCTGCCTAGTATGCCTCTTTTGAAGCAAGATGAGATTCCAAGCTTTTTGCATCCTTTTGACCCCTATAGGAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

153

Amino Acids

17.18

Weight (kDa)

4.48

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15480
fragaria_vesca	FvH4_2g05060 FvH4_2g05090
malus_domestica	MD10G1098500.v1.1 MD10G1115800.v1.1 MD11G1019300.v1.1
prunus_persica	Prupe.8G135700_v2.0.a1 Prupe.8G135800_v2.0.a1
pyrus_communis	pycom10g08440 pycom11g01430
rosa_chinensis	RchiOBHm_Chr6g0254941 RchiOBHm_Chr6g0254951
rosa_laevigata	RLG00000014875 RLG00000014876
rosa_multiflora	Rmu_co8344247.1_g000001 Rmu_sc0000016.1_g000013 Rmu_sc0000016.1_g000022 Rmu_sc0005039.1_g000007 Rmu_sc0028324.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210450 Rroxscaffold_7G00210460
rosa_rugosa	Rorug05G0555600 Rorug05G0555700
rosa_samantha	Rh6AG073000 Rh6AG073200 Rh6BG065200 Rh6BG065400 Rh6CG065000 Rh6CG065100 Rh6CG065200 Rh6DG062000 Rh6DG062200 Rh6DG062300
rosa_wichuraiana	Rw0G002720 Rw6G006360 Rw6G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	96, 98, 134
AclWI	GGATC	4 cut(s)	95, 108, 265, 278
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	406
AluBI	AGCT	4 cut(s)	265, 362, 385, 426
AluI	AGCT	4 cut(s)	265, 362, 385, 426
AlwI	GGATC	4 cut(s)	95, 108, 265, 278
ApeKI	GCWGC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	175, 200
BamHI	GGATCC	2 cut(s)	100, 270
BbvI	GCAGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BcnI	CCSGG	1 cut(s)	337
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	102, 272
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	27, 442
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	4 cut(s)	96, 104, 239, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	41, 172
BseDI	CCNNGG	4 cut(s)	96, 104, 239, 336
BseGI	GGATG	3 cut(s)	177, 382, 433
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	41, 172
BseXI	GCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	100, 270
BspACI	CCGC	3 cut(s)	96, 98, 134
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	102, 272
BspPI	GGATC	4 cut(s)	95, 108, 265, 278
BsrI	ACTGG	2 cut(s)	41, 172
BssECI	CCNNGG	4 cut(s)	96, 104, 239, 336
BssMI	GATC	2 cut(s)	100, 270
BssT1I	CCWWGG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	177, 382, 433
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	103, 273
BstMBI	GATC	2 cut(s)	100, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	448
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	100, 270
BstYI	RGATCY	2 cut(s)	100, 270
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	177, 382, 433
Cfr42I	CCGCGG	1 cut(s)	99
CviAII	CATG	2 cut(s)	185, 276
CviJI	RGCY	6 cut(s)	85, 265, 317, 362, 385, 426
CviKI_1	RGCY	6 cut(s)	85, 265, 317, 362, 385, 426
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	102, 272
DpnII	GATC	2 cut(s)	100, 270
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	2 cut(s)	188, 279
FaiI	YATR	5 cut(s)	129, 186, 277, 395, 450
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	184, 275
FauI	CCCGC	2 cut(s)	103, 141
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	3 cut(s)	184, 389, 420
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	386
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	2 cut(s)	188, 279
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	2 cut(s)	292, 418
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	2 cut(s)	175, 200
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	105, 354
Hpy188III	TCNNGA	2 cut(s)	89, 140
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	148, 188
HpyCH4V	TGCA	2 cut(s)	203, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	188, 279
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	100, 270
LpnPI	CCDG	6 cut(s)	46, 54, 102, 153, 349, 381
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	27, 442
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	102, 272
MboI	GATC	2 cut(s)	100, 270
MflI	RGATCY	2 cut(s)	100, 270
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	99, 184, 334, 408
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	98, 385
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	100, 270
NlaIII	CATG	2 cut(s)	188, 279
NlaIV	GGNNCC	2 cut(s)	102, 272
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	292, 418
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	102, 272
PsuI	RGATCY	2 cut(s)	100, 270
PvuII	CAGCTG	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	2 cut(s)	100, 270
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	8 cut(s)	12, 65, 199, 267, 345, 364, 387, 428
SfaNI	GCATC	2 cut(s)	27, 442
SfcI	CTRYAG	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SsiI	CCGC	3 cut(s)	96, 98, 134
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	239
TaqI	TCGA	3 cut(s)	24, 35, 66
TfiI	GAWTC	2 cut(s)	292, 418
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	288
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.