Rw0G002720

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00085
OG0003448
Physical Location & Seq
Reverse (-)
9429 .. 11056
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002720.1

Sequence Viewer

Length: 1431 bp
ATGGGGACTATTAGATCTGAAACTCCTACTCATATATTTCTTGTGTGTTTTCCAGCACAAGGCCACATAAACCCTATGCTGCGGTTAGGCAAACATCTAGCTTCCAAGGGTTTGTTGGTCACTTTCTCCACCACTGAAGATTATGGGAATAAGATGAGAAAGGCTAATGGCATCGTCGACAACCAACCTTCACCAGTTGGCAATGGATTTATCAGGTTCGAGTTCTTTGACGACGGGCTTCCTGACCCCGAGGATCCGAGGCGAACCCAGTTGGACTTCTACATCCCACTTCTTGAGAAAGTAGGGAAGGAGTTGGTGACTGGGATGATAAACAAGCATGGTGAGGAAGGTGGTGTAAGAGTTTCGTGCCTTGTGAACAACCCGTTCATTCCTTGGGTTTGTGATGTTGCTACTGAGCTTGGGATCCCTTGTGCCACCCTTTGGATTCAGTCTTGTGCTGTGTTCTCGGCTTATTACCATTACAGCGCCGGGGCGGTGGCGTTTCCGACTGAAGCTGAACCAGACTTGGATGTTCAGCTGCCTAGTATGCCTCTTTTGAAGCATGATGAGATTCCAAGCTTTTTGCATCCTTTTGCTCCCTTTAGGGTTCTCGGTATGGCTATTTTAGGCCAGTTCAAAAAGTTATCCAAGTCGTCCTACGTATTGATGGACACGATACAAGAACTTGAGCCTGAGACCATTGAAGAAATGTCGAAAGTCTGCATAGTGAAACCAGTGGGGCCCTTATTCAAGATTCCGGAAGCTAACAACATGACCATTCGCGGTGACTTGATGAAAGCCGATGATTGTCTCGACTGGCTCAGCTCAAAACCTCCAGCATCAGTTGTTTACATCTCTTTTGGGAGCATTGTGTACTTGAAGCAAGAGCAAGTGGATGAGATTGCTCATGGTTTATTGAGCTCAGGGATTTCATTTTTATGGGTTCTGAGGCCGCCGCGCAAAGCAGCCGGGTTTGACATGCATGTTTTGCCAGAAGGGTTTTTGGATAAGGTTGGGGATAACGGAAAATTGGTGCAATGGAGTCCGCAAGAGAAAGTTTTGGCTCACCCTTCTTTGGCTTGTTTCTTAACTCATTGTGGTTGGAACTCTTCAGTAGAAGCACTGACTTTGGGAGTACCCGTGGTGACTTTTCCTCAATGGGGTGACCAAGTCACCAATGCCAAGTACTTGGTTGATGTGTTTGGTGTGGGGCTTAGAATGTGTAGAGGGGAAGCTGAGAATAGGTTGGTCCTGAGAGATGAGATTGAGAAGTGCTTGTTGGAGGCGACGGTGGGGGAGAAGGCGGCCGAGTTGAAGCAAAACGCTTTGAGATGGAAGAAGGTGGCGGAGGAGGCGGTGGCTGAAGGCGGTTCTTCCCAACGCAACCTTCAAGATTTTCTAGACGAGATTGCAAGGACTTGCATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

476

Amino Acids

52.66

Weight (kDa)

5.34

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 12 - 53 1.4e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 279 - 401 1.9e-22 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 335 - 443 2.9e-06 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AccI GTMKAC 1 cut(s) 177
AccII CGCG 2 cut(s) 783, 958
AccIII TCCGGA 1 cut(s) 757
AclWI GGATC 4 cut(s) 248, 261, 418, 431
AcoI YGGCCR 1 cut(s) 1305
AcuI CTGAAG 4 cut(s) 156, 531, 1095, 1383
AfaI GTAC 3 cut(s) 875, 1137, 1187
AfiI CCNNNNNNNGG 4 cut(s) 59, 441, 1075, 1160
AgsI TTSAA 7 cut(s) 559, 637, 704, 751, 880, 1315, 1391
AjuI GAANNNNNNNTTGG 4 cut(s) 1262, 1294, 1371, 1403
AluBI AGCT 9 cut(s) 101, 418, 515, 538, 579, 764, 825, 921, 1235
AluI AGCT 9 cut(s) 101, 418, 515, 538, 579, 764, 825, 921, 1235
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 2 cut(s) 689, 815
AlwI GGATC 4 cut(s) 248, 261, 418, 431
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 5 cut(s) 61, 628, 740, 950, 1305
ApaI GGGCCC 1 cut(s) 744
ApeKI GCWGC 3 cut(s) 79, 538, 965
AspLEI GCGC 2 cut(s) 488, 960
AspS9I GGNCC 3 cut(s) 740, 741, 1249
AsuC2I CCSGG 2 cut(s) 490, 970
AsuHPI GGTGA 8 cut(s) 183, 328, 353, 797, 1058, 1156, 1165, 1175
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 1249
BaeGI GKGCMC 1 cut(s) 744
BamHI GGATCC 2 cut(s) 253, 423
BanII GRGCYC 2 cut(s) 744, 923
Bbv12I GWGCWC 1 cut(s) 923
BbvI GCAGC 3 cut(s) 66, 525, 977
BccI CCATC 2 cut(s) 661, 1326
BcnI CCSGG 2 cut(s) 490, 970
BcoDI GTCTC 2 cut(s) 689, 815
BfaI CTAG 3 cut(s) 98, 543, 1400
BfoI RGCGCY 1 cut(s) 489
BglII AGATCT 1 cut(s) 14
BisI GCNGC 6 cut(s) 80, 539, 953, 956, 966, 1305
BlpI GCTNAGC 1 cut(s) 821
BlsI GCNGC 6 cut(s) 81, 540, 954, 957, 967, 1306
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 2 cut(s) 490, 970
Bme18I GGWCC 1 cut(s) 1249
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 740, 741, 1249
BmiI GGNNCC 4 cut(s) 255, 425, 741, 742
BmrFI CCNGG 2 cut(s) 490, 970
BmrI ACTGGG 2 cut(s) 262, 330
BmsI GCATC 3 cut(s) 180, 595, 848
BmuI ACTGGG 2 cut(s) 262, 330
BpmI CTGGAG 1 cut(s) 819
Bpu10I CCTNAGC 1 cut(s) 922
Bpu1102I GCTNAGC 1 cut(s) 821
BpuEI CTTGAG 2 cut(s) 314, 707
BpuMI CCSGG 2 cut(s) 490, 970
BsaAI YACGTR 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 6 cut(s) 105, 249, 257, 392, 489, 1140
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 441, 1075, 1160
Bse1I ACTGG 6 cut(s) 194, 268, 325, 631, 734, 821
Bse3DI GCAATG 3 cut(s) 208, 1043, 1422
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 6 cut(s) 105, 249, 257, 392, 489, 1140
BseGI GGATG 5 cut(s) 282, 330, 535, 586, 901
BseLI CCNNNNNNNGG 4 cut(s) 59, 441, 1075, 1160
BseMI GCAATG 3 cut(s) 208, 1043, 1422
BseMII CTCAG 7 cut(s) 405, 684, 835, 936, 938, 1227, 1244
BseNI ACTGG 6 cut(s) 194, 268, 325, 631, 734, 821
BseRI GAGGAG 1 cut(s) 1364
BseSI GKGCMC 1 cut(s) 744
BseX3I CGGCCG 1 cut(s) 1305
BseXI GCAGC 3 cut(s) 66, 525, 977
Bsh1236I CGCG 2 cut(s) 783, 958
Bsh1285I CGRYCG 1 cut(s) 1308
BshFI GGCC 5 cut(s) 63, 630, 742, 952, 1307
BsiEI CGRYCG 1 cut(s) 1308
BsiHKAI GWGCWC 1 cut(s) 923
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 489, 758, 969
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 4 cut(s) 59, 441, 1075, 1160
BsmAI GTCTC 2 cut(s) 689, 815
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 5 cut(s) 63, 630, 742, 952, 1307
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 248
Bsp120I GGGCCC 1 cut(s) 740
Bsp1286I GDGCHC 2 cut(s) 744, 923
Bsp13I TCCGGA 1 cut(s) 757
Bsp143I GATC 3 cut(s) 14, 253, 423
Bsp1720I GCTNAGC 1 cut(s) 821
BspANI GGCC 5 cut(s) 63, 630, 742, 952, 1307
BspCNI CTCAG 7 cut(s) 406, 685, 834, 935, 939, 1228, 1245
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 2 cut(s) 783, 958
BspLI GGNNCC 4 cut(s) 255, 425, 741, 742
BspPI GGATC 4 cut(s) 248, 261, 418, 431
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 3 cut(s) 208, 1043, 1422
BsrI ACTGG 6 cut(s) 194, 268, 325, 631, 734, 821
BssECI CCNNGG 6 cut(s) 105, 249, 257, 392, 489, 1140
BssMI GATC 3 cut(s) 14, 253, 423
BssT1I CCWWGG 2 cut(s) 105, 392
Bst4CI ACNGT 1 cut(s) 1291
Bst6I CTCTTC 1 cut(s) 1114
BstAPI GCANNNNNTGC 1 cut(s) 988
BstBAI YACGTR 1 cut(s) 661
BstDEI CTNAG 8 cut(s) 414, 693, 821, 922, 947, 1214, 1236, 1253
BstDSI CCRYGG 1 cut(s) 1140
BstEII GGTNACC 1 cut(s) 1163
BstF5I GGATG 5 cut(s) 282, 330, 535, 586, 901
BstFNI CGCG 2 cut(s) 783, 958
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 2 cut(s) 488, 960
BstKTI GATC 3 cut(s) 17, 256, 426
BstMAI GTCTC 2 cut(s) 689, 815
BstMBI GATC 3 cut(s) 14, 253, 423
BstMCI CGRYCG 1 cut(s) 1308
BstMWI GCNNNNNNNGC 3 cut(s) 547, 988, 1352
BstNSI RCATGY 2 cut(s) 982, 986
BstPI GGTNACC 1 cut(s) 1163
BstSCI CCNGG 2 cut(s) 488, 968
BstSLI GKGCMC 1 cut(s) 744
BstSNI TACGTA 1 cut(s) 661
BstUI CGCG 2 cut(s) 783, 958
BstV1I GCAGC 3 cut(s) 66, 525, 977
BstX2I RGATCY 3 cut(s) 14, 253, 423
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 3 cut(s) 14, 253, 423
BstZI CGGCCG 1 cut(s) 1305
BsuRI GGCC 5 cut(s) 63, 630, 742, 952, 1307
BtgI CCRYGG 1 cut(s) 1140
BtsCI GGATG 5 cut(s) 282, 330, 535, 586, 901
BtsIMutI CAGTG 3 cut(s) 132, 741, 1121
CfoI GCGC 2 cut(s) 488, 960
Cfr13I GGNCC 3 cut(s) 740, 741, 1249
Csp6I GTAC 3 cut(s) 874, 1136, 1186
CviAII CATG 6 cut(s) 338, 563, 772, 908, 979, 983
CviQI GTAC 3 cut(s) 874, 1136, 1186
DdeI CTNAG 8 cut(s) 414, 693, 821, 922, 947, 1214, 1236, 1253
DpnI GATC 3 cut(s) 16, 255, 425
DpnII GATC 3 cut(s) 14, 253, 423
EaeI YGGCCR 1 cut(s) 1305
EagI CGGCCG 1 cut(s) 1305
Eam1104I CTCTTC 1 cut(s) 1114
EarI CTCTTC 1 cut(s) 1114
EciI GGCGGA 1 cut(s) 1361
Ecl136II GAGCTC 1 cut(s) 921
EclXI CGGCCG 1 cut(s) 1305
Eco105I TACGTA 1 cut(s) 661
Eco130I CCWWGG 2 cut(s) 105, 392
Eco24I GRGCYC 2 cut(s) 744, 923
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 1249
Eco52I CGGCCG 1 cut(s) 1305
Eco53kI GAGCTC 1 cut(s) 921
Eco57I CTGAAG 4 cut(s) 156, 531, 1095, 1383
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 1163
EcoICRI GAGCTC 1 cut(s) 921
EcoO109I RGGNCCY 2 cut(s) 740, 741
EcoO65I GGTNACC 1 cut(s) 1163
EcoT14I CCWWGG 2 cut(s) 105, 392
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 2 cut(s) 744, 923
ErhI CCWWGG 2 cut(s) 105, 392
FaeI CATG 6 cut(s) 341, 566, 775, 911, 982, 986
FaqI GGGAC 1 cut(s) 19
FatI CATG 6 cut(s) 337, 562, 771, 907, 978, 982
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 80, 539, 953, 956, 966, 1305
FokI GGATG 5 cut(s) 269, 337, 542, 573, 908
FriOI GRGCYC 2 cut(s) 744, 923
Fsp4HI GCNGC 6 cut(s) 80, 539, 953, 956, 966, 1305
FspBI CTAG 3 cut(s) 98, 543, 1400
GlaI GCGC 2 cut(s) 487, 959
GluI GCNGC 6 cut(s) 80, 539, 953, 956, 966, 1305
GsuI CTGGAG 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 5 cut(s) 63, 630, 742, 952, 1307
HapII CCGG 3 cut(s) 489, 758, 969
HhaI GCGC 2 cut(s) 488, 960
Hin1II CATG 6 cut(s) 341, 566, 775, 911, 982, 986
Hin6I GCGC 2 cut(s) 486, 958
HinP1I GCGC 2 cut(s) 486, 958
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 4 cut(s) 445, 571, 754, 1042
HpaII CCGG 3 cut(s) 489, 758, 969
HphI GGTGA 8 cut(s) 183, 328, 353, 797, 1058, 1156, 1165, 1175
Hpy166II GTNNAC 4 cut(s) 178, 376, 850, 874
Hpy188I TCNGA 4 cut(s) 19, 258, 507, 948
Hpy188III TCNNGA 8 cut(s) 242, 293, 751, 758, 812, 1252, 1391, 1400
Hpy8I GTNNAC 4 cut(s) 178, 376, 850, 874
Hpy99I CGWCG 3 cut(s) 179, 236, 1291
HpyAV CCTTC 9 cut(s) 198, 301, 341, 989, 1080, 1294, 1333, 1358, 1397
HpyCH4III ACNGT 1 cut(s) 1291
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 6 cut(s) 586, 723, 982, 1036, 1412, 1422
HpyF10VI GCNNNNNNNGC 3 cut(s) 547, 988, 1352
HpyF3I CTNAG 8 cut(s) 414, 693, 821, 922, 947, 1214, 1236, 1253
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 6 cut(s) 341, 566, 775, 911, 982, 986
HspAI GCGC 2 cut(s) 486, 958
Kpn2I TCCGGA 1 cut(s) 757
Kzo9I GATC 3 cut(s) 14, 253, 423
LmnI GCTCC 2 cut(s) 601, 864
Lsp1109I GCAGC 3 cut(s) 66, 525, 977
LweI GCATC 3 cut(s) 180, 595, 848
MaeI CTAG 3 cut(s) 98, 543, 1400
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 6 cut(s) 118, 316, 785, 1144, 1163, 1171
MalI GATC 3 cut(s) 16, 255, 425
MboI GATC 3 cut(s) 14, 253, 423
MboII GAAGA 5 cut(s) 149, 716, 1101, 1348, 1365
MflI RGATCY 3 cut(s) 14, 253, 423
MhlI GDGCHC 2 cut(s) 744, 923
MluCI AATT 1 cut(s) 1028
MlyI GAGTC 1 cut(s) 1051
MmeI TCCRAC 4 cut(s) 252, 530, 1082, 1260
Mph1103I ATGCAT 1 cut(s) 984
MroI TCCGGA 1 cut(s) 757
MseI TTAA 2 cut(s) 1088, 1429
MslI CAYNNNNRTG 1 cut(s) 937
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 3 cut(s) 489, 758, 969
MspR9I CCNGG 2 cut(s) 490, 970
MvnI CGCG 2 cut(s) 783, 958
MwoI GCNNNNNNNGC 3 cut(s) 547, 988, 1352
NciI CCSGG 2 cut(s) 490, 970
NdeII GATC 3 cut(s) 14, 253, 423
NlaIII CATG 6 cut(s) 341, 566, 775, 911, 982, 986
NlaIV GGNNCC 4 cut(s) 255, 425, 741, 742
NmeAIII GCCGAG 2 cut(s) 446, 1333
NmuCI GTSAC 6 cut(s) 118, 316, 785, 1144, 1163, 1171
NsiI ATGCAT 1 cut(s) 984
NspI RCATGY 2 cut(s) 982, 986
PfeI GAWTC 3 cut(s) 445, 571, 754
PflFI GACNNNGTC 1 cut(s) 1169
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 6 cut(s) 81, 540, 954, 957, 967, 1306
PleI GAGTC 1 cut(s) 1050
PpsI GAGTC 1 cut(s) 1050
Ppu21I YACGTR 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 923
PspEI GGTNACC 1 cut(s) 1163
PspN4I GGNNCC 4 cut(s) 255, 425, 741, 742
PspOMI GGGCCC 1 cut(s) 740
PspPI GGNCC 3 cut(s) 740, 741, 1249
PsuI RGATCY 3 cut(s) 14, 253, 423
PsyI GACNNNGTC 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 3 cut(s) 875, 1137, 1187
RsaNI GTAC 3 cut(s) 874, 1136, 1186
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 1 cut(s) 923
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 1088, 1429
SatI GCNGC 6 cut(s) 80, 539, 953, 956, 966, 1305
Sau3AI GATC 3 cut(s) 14, 253, 423
Sau96I GGNCC 3 cut(s) 740, 741, 1249
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 1 cut(s) 1051
ScrFI CCNGG 2 cut(s) 490, 970
SduI GDGCHC 2 cut(s) 744, 923
SfaNI GCATC 3 cut(s) 180, 595, 848
SinI GGWCC 1 cut(s) 1249
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 2 cut(s) 293, 686
SmoI CTYRAG 2 cut(s) 293, 686
SnaBI TACGTA 1 cut(s) 661
Sse9I AATT 1 cut(s) 1028
SspMI CTAG 3 cut(s) 98, 543, 1400
SstI GAGCTC 1 cut(s) 923
StyD4I CCNGG 2 cut(s) 488, 968
StyI CCWWGG 2 cut(s) 105, 392
TaaI ACNGT 1 cut(s) 1291
TaiI ACGT 1 cut(s) 663
TaqI TCGA 4 cut(s) 177, 219, 713, 813
TasI AATT 1 cut(s) 1028
TatI WGTACW 2 cut(s) 873, 1185
TauI GCSGC 3 cut(s) 955, 958, 1307
TfiI GAWTC 3 cut(s) 445, 571, 754
Tru1I TTAA 2 cut(s) 1088, 1429
Tru9I TTAA 2 cut(s) 1088, 1429
TscAI CASTG 3 cut(s) 139, 741, 1128
TseFI GTSAC 6 cut(s) 118, 316, 785, 1144, 1163, 1171
TseI GCWGC 3 cut(s) 79, 538, 965
Tsp45I GTSAC 6 cut(s) 118, 316, 785, 1144, 1163, 1171
TspDTI ATGAA 3 cut(s) 376, 809, 921
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 3 cut(s) 139, 741, 1128
Tth111I GACNNNGTC 1 cut(s) 1169
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 1249
XbaI TCTAGA 1 cut(s) 1399
XceI RCATGY 2 cut(s) 982, 986
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 98, 543, 1400
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.