Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028324.1

Orthogroup ID

OG0003448

Physical Location & Seq

Genomic Coordinates Reverse (-)

960 .. 1724

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028324.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggacacgatacaagaacttgagcctgagaccattgaagaaatgtcgaaagtctgcatagtgaaaccagtggggcccttattcaagattccggaagctaacaacacgaccattcgcggtgacttaatgaaagccgatgattgtctcgactggctcagctcaaaacctccagcatcagttgtttacatctcttttgggagcattgtgtacttgaagcaagagcaagtggatgagattgctcatggtttattgagctctgggatttcatttttatgggttctgaggccgccgcgcaaagcagccgggtttgacatgcatgttttgccagaagggtttttggataaggttggggataacggaaaattggtgcaatggagtccgcaagagaaagttttggctcacccttctttggcttgtttcttaactcattgtggttggaactcttcagtagaagcactgactttgggagtacccgtggtgacttttcctcaatggggtgaccaagtcaccaatgccaagtacttggttgatgtgtttggtgtggggcttagattgtgtagaggggaagctgagaataggttggtcctgagagatgagattgagaagtgcttgttggaggcgacggtgggggagaaggcggccgagttgaagcaaaacgctttgagatggaagaaggtggcggaggaggcggtggctgaaggcggttcttcccaacgcaaccttcaagattttctagacgagattgcaaggacttgcattgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

254

Amino Acids

28.05

Weight (kDa)

4.99

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15480
fragaria_vesca	FvH4_2g05060 FvH4_2g05090
malus_domestica	MD10G1098500.v1.1 MD10G1115800.v1.1 MD11G1019300.v1.1
prunus_persica	Prupe.8G135700_v2.0.a1 Prupe.8G135800_v2.0.a1
pyrus_communis	pycom10g08440 pycom11g01430
rosa_chinensis	RchiOBHm_Chr6g0254941 RchiOBHm_Chr6g0254951
rosa_laevigata	RLG00000014875 RLG00000014876
rosa_multiflora	Rmu_co8344247.1_g000001 Rmu_sc0000016.1_g000013 Rmu_sc0000016.1_g000022 Rmu_sc0005039.1_g000007 Rmu_sc0028324.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210450 Rroxscaffold_7G00210460
rosa_rugosa	Rorug05G0555600 Rorug05G0555700
rosa_samantha	Rh6AG073000 Rh6AG073200 Rh6BG065200 Rh6BG065400 Rh6CG065000 Rh6CG065100 Rh6CG065200 Rh6DG062000 Rh6DG062200 Rh6DG062300
rosa_wichuraiana	Rw0G002720 Rw6G006360 Rw6G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 292
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	8 cut(s)	117, 287, 290, 380, 638, 680, 689, 702
AcoI	YGGCCR	1 cut(s)	639
AcuI	CTGAAG	2 cut(s)	429, 717
AfaI	GTAC	3 cut(s)	209, 471, 521
AfiI	CCNNNNNNNGG	2 cut(s)	409, 494
AgsI	TTSAA	5 cut(s)	38, 85, 214, 649, 725
AjuI	GAANNNNNNNTTGG	4 cut(s)	596, 628, 705, 737
AluBI	AGCT	4 cut(s)	98, 159, 255, 569
AluI	AGCT	4 cut(s)	98, 159, 255, 569
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	23, 149
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	3 cut(s)	74, 284, 639
ApaI	GGGCCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	74, 75, 583
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	5 cut(s)	131, 392, 490, 499, 509
AvaII	GGWCC	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	78
BanII	GRGCYC	2 cut(s)	78, 257
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	23, 149
BfaI	CTAG	1 cut(s)	734
BisI	GCNGC	4 cut(s)	287, 290, 300, 639
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	4 cut(s)	288, 291, 301, 640
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	74, 75, 583
BmiI	GGNNCC	2 cut(s)	75, 76
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	304
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 494
Bse1I	ACTGG	2 cut(s)	68, 155
Bse3DI	GCAATG	2 cut(s)	377, 756
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	409, 494
BseMI	GCAATG	2 cut(s)	377, 756
BseMII	CTCAG	5 cut(s)	18, 169, 272, 561, 578
BseNI	ACTGG	2 cut(s)	68, 155
BseRI	GAGGAG	1 cut(s)	698
BseSI	GKGCMC	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	117, 292
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	3 cut(s)	76, 286, 641
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	92, 303
BslI	CCNNNNNNNGG	2 cut(s)	409, 494
BsmAI	GTCTC	2 cut(s)	23, 149
BsnI	GGCC	3 cut(s)	76, 286, 641
Bso31I	GGTCTC	1 cut(s)	23
Bsp120I	GGGCCC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	78, 257
Bsp13I	TCCGGA	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	8 cut(s)	117, 287, 290, 380, 638, 680, 689, 702
BspANI	GGCC	3 cut(s)	76, 286, 641
BspCNI	CTCAG	5 cut(s)	19, 168, 273, 562, 579
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	117, 292
BspLI	GGNNCC	2 cut(s)	75, 76
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	377, 756
BsrI	ACTGG	2 cut(s)	68, 155
BssECI	CCNNGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	448
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstDEI	CTNAG	6 cut(s)	27, 155, 281, 548, 570, 587
BstDSI	CCRYGG	1 cut(s)	474
BstEII	GGTNACC	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	117, 292
BstHHI	GCGC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	23, 149
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 686
BstNSI	RCATGY	2 cut(s)	316, 320
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	2 cut(s)	117, 292
BstV1I	GCAGC	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	639
BsuRI	GGCC	3 cut(s)	76, 286, 641
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	75, 455
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	74, 75, 583
Csp6I	GTAC	3 cut(s)	208, 470, 520
CviAII	CATG	3 cut(s)	242, 313, 317
CviQI	GTAC	3 cut(s)	208, 470, 520
DdeI	CTNAG	6 cut(s)	27, 155, 281, 548, 570, 587
EaeI	YGGCCR	1 cut(s)	639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	695
Ecl136II	GAGCTC	1 cut(s)	255
EclXI	CGGCCG	1 cut(s)	639
Eco24I	GRGCYC	2 cut(s)	78, 257
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	583
Eco52I	CGGCCG	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	429, 717
Eco91I	GGTNACC	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	74, 75
EcoO65I	GGTNACC	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	78, 257
FaeI	CATG	3 cut(s)	245, 316, 320
FaiI	YATR	5 cut(s)	59, 243, 274, 314, 318
FatI	CATG	3 cut(s)	241, 312, 316
Fnu4HI	GCNGC	4 cut(s)	287, 290, 300, 639
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	78, 257
Fsp4HI	GCNGC	4 cut(s)	287, 290, 300, 639
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	4 cut(s)	287, 290, 300, 639
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	76, 286, 641
HapII	CCGG	2 cut(s)	92, 303
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	245, 316, 320
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	88, 376
HpaII	CCGG	2 cut(s)	92, 303
HphI	GGTGA	5 cut(s)	131, 392, 490, 499, 509
Hpy166II	GTNNAC	2 cut(s)	184, 208
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	6 cut(s)	85, 92, 146, 586, 725, 734
Hpy8I	GTNNAC	2 cut(s)	184, 208
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	6 cut(s)	323, 414, 628, 667, 692, 731
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4V	TGCA	5 cut(s)	57, 316, 370, 746, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 686
HpyF3I	CTNAG	6 cut(s)	27, 155, 281, 548, 570, 587
Hsp92II	CATG	3 cut(s)	245, 316, 320
HspAI	GCGC	1 cut(s)	292
Kpn2I	TCCGGA	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	9 cut(s)	39, 81, 105, 136, 183, 243, 316, 339, 599
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	4 cut(s)	119, 478, 497, 505
MboII	GAAGA	4 cut(s)	50, 435, 682, 699
MhlI	GDGCHC	2 cut(s)	78, 257
MluCI	AATT	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	416, 594
MnlI	CCTC	7 cut(s)	177, 276, 498, 554, 610, 676, 679
Mph1103I	ATGCAT	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	3 cut(s)	125, 422, 763
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	2 cut(s)	92, 303
MspR9I	CCNGG	1 cut(s)	304
MvnI	CGCG	2 cut(s)	117, 292
MwoI	GCNNNNNNNGC	2 cut(s)	322, 686
NciI	CCSGG	1 cut(s)	304
NlaIII	CATG	3 cut(s)	245, 316, 320
NlaIV	GGNNCC	2 cut(s)	75, 76
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	4 cut(s)	119, 478, 497, 505
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	2 cut(s)	316, 320
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	288, 291, 301, 640
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	257
PspEI	GGTNACC	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	75, 76
PspOMI	GGGCCC	1 cut(s)	74
PspPI	GGNCC	3 cut(s)	74, 75, 583
PsyI	GACNNNGTC	1 cut(s)	503
RsaI	GTAC	3 cut(s)	209, 471, 521
RsaNI	GTAC	3 cut(s)	208, 470, 520
RseI	CAYNNNNRTG	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	125, 422, 763
SatI	GCNGC	4 cut(s)	287, 290, 300, 639
Sau96I	GGNCC	3 cut(s)	74, 75, 583
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	2 cut(s)	78, 257
SetI	ASST	9 cut(s)	100, 161, 169, 257, 348, 571, 581, 678, 723
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	8 cut(s)	117, 287, 290, 380, 638, 680, 689, 702
SspMI	CTAG	1 cut(s)	734
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	47, 147
TasI	AATT	1 cut(s)	362
TatI	WGTACW	2 cut(s)	207, 519
TauI	GCSGC	3 cut(s)	289, 292, 641
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	125, 422, 763
Tru9I	TTAA	3 cut(s)	125, 422, 763
TscAI	CASTG	2 cut(s)	75, 462
TseFI	GTSAC	4 cut(s)	119, 478, 497, 505
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	4 cut(s)	119, 478, 497, 505
TspDTI	ATGAA	2 cut(s)	143, 255
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	75, 462
Tth111I	GACNNNGTC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	583
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	2 cut(s)	316, 320
XspI	CTAG	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.