Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373099.1

Orthogroup ID

OG0006051

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 656

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtatggagatgaaaagggaaatcctggatttcaatctggttcaccaggggatcatggtggatatacttacttcaccaatggtggaccaggacaaaaccagtttacctacagaccaagtgattggcagagcatgggtgggcagggaggttcccaatcgttttccttttcctttggtggccccagtggtggcccaagtccattcagttttggtatgaacgacattttctcaaacttttttggggataattctggagctggaggtcagtttggtggtttcactggttcaagcagggctcgacctgactctcagagtactccgaagagcattagggccctcagttcacagatctataagaaagaagtagttgaccagggaatgacttggctcttgttctcttatacgacctctttgaaggggcatcagcatgttgaatctctggtagaggaagttgccagctcactgaagggtgccctaaaggttggaagtgtaaactgtgacactgaggcatcactctgcaaggaccttggcatatatccacgcagaatgcccagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016491 GO:0022414 GO:0030054 GO:0030154 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0034605 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0051716 GO:0055044 GO:0055114 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

185

Amino Acids

19.69

Weight (kDa)

6.82

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08970 AT3G08970
fragaria_vesca	FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110
malus_domestica	MD00G1062300.v1.1 MD12G1172300.v1.1
prunus_persica	Prupe.6G280600_v2.0.a1 Prupe.6G280600_v2.0.a1
pyrus_communis	pycom04g14320 pycom12g16350
rosa_chinensis	RchiOBHm_Chr3g0462541
rosa_laevigata	RLG00000024850
rosa_multiflora	Rmu_co8373099.1_g000001 Rmu_sc0003624.1_g000017 Rmu_sc0023157.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417410 Rroxscaffold_6G00417430
rosa_rugosa	Rorug03G0057500
rosa_samantha	Rh3AG115400 Rh3BG118800 Rh3CG122200 Rh3DG120900
rosa_wichuraiana	Rw3G009770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	35, 288, 415, 434
AjnI	CCWGG	4 cut(s)	25, 46, 88, 372
AluBI	AGCT	2 cut(s)	257, 459
AluI	AGCT	2 cut(s)	257, 459
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	3 cut(s)	178, 190, 333
ApaI	GGGCCC	1 cut(s)	337
AspS9I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
AsuHPI	GGTGA	2 cut(s)	36, 67
AvaII	GGWCC	2 cut(s)	86, 523
BaeGI	GKGCMC	2 cut(s)	337, 475
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	298, 337
BciT130I	CCWGG	5 cut(s)	27, 48, 90, 374, 553
BfmI	CTRYAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	348
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	5 cut(s)	27, 48, 90, 374, 553
Bme18I	GGWCC	2 cut(s)	86, 523
BmgT120I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
BmiI	GGNNCC	4 cut(s)	151, 181, 335, 472
BmrFI	CCNGG	5 cut(s)	27, 48, 90, 374, 553
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	430, 518
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	2 cut(s)	273, 279
BsaBI	GATNNNNATC	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	47, 373, 526, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	100, 183, 286
Bse8I	GATNNNNATC	1 cut(s)	34
BseBI	CCWGG	5 cut(s)	27, 48, 90, 374, 553
BseDI	CCNNGG	4 cut(s)	47, 373, 526, 551
BseJI	GATNNNNATC	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	323, 352, 495
BseNI	ACTGG	3 cut(s)	100, 183, 286
BseSI	GKGCMC	2 cut(s)	337, 475
BshFI	GGCC	3 cut(s)	180, 192, 335
BshNI	GGYRCC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	3 cut(s)	180, 192, 335
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	298, 337, 475
Bsp143I	GATC	2 cut(s)	52, 348
BspANI	GGCC	3 cut(s)	180, 192, 335
BspCNI	CTCAG	3 cut(s)	322, 351, 496
BspLI	GGNNCC	4 cut(s)	151, 181, 335, 472
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	100, 183, 286
BssECI	CCNNGG	4 cut(s)	47, 373, 526, 551
BssMI	GATC	2 cut(s)	52, 348
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	5 cut(s)	27, 48, 90, 374, 553
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	3 cut(s)	309, 338, 504
BstKTI	GATC	2 cut(s)	55, 351
BstMBI	GATC	2 cut(s)	52, 348
BstNI	CCWGG	5 cut(s)	27, 48, 90, 374, 553
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	4 cut(s)	25, 46, 88, 372
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	2 cut(s)	337, 475
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	180, 192, 335
BtsIMutI	CAGTG	4 cut(s)	190, 279, 461, 501
Cac8I	GCNNGC	1 cut(s)	457
Cfr13I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	3 cut(s)	56, 133, 428
CviJI	RGCY	7 cut(s)	180, 192, 257, 296, 335, 388, 459
CviKI_1	RGCY	7 cut(s)	180, 192, 257, 296, 335, 388, 459
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	3 cut(s)	309, 338, 504
DpnI	GATC	2 cut(s)	54, 350
DpnII	GATC	2 cut(s)	52, 348
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	298, 337
Eco47I	GGWCC	2 cut(s)	86, 523
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	3 cut(s)	333, 334, 523
EcoRII	CCWGG	4 cut(s)	25, 46, 88, 372
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	298, 337
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	59, 136, 431
FatI	CATG	3 cut(s)	55, 132, 427
FriOI	GRGCYC	2 cut(s)	298, 337
GsuI	CTGGAG	2 cut(s)	273, 279
HaeIII	GGCC	3 cut(s)	180, 192, 335
Hin1II	CATG	3 cut(s)	59, 136, 431
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	305, 434
HphI	GGTGA	2 cut(s)	36, 67
Hpy166II	GTNNAC	6 cut(s)	44, 86, 105, 344, 370, 493
Hpy188I	TCNGA	2 cut(s)	312, 321
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	6 cut(s)	44, 86, 105, 344, 370, 493
HpyAV	CCTTC	2 cut(s)	409, 460
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	1 cut(s)	519
HpyF3I	CTNAG	3 cut(s)	309, 338, 504
Hsp92II	CATG	3 cut(s)	59, 136, 431
Kzo9I	GATC	2 cut(s)	52, 348
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	254
LweI	GCATC	2 cut(s)	430, 518
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	54, 350
MboI	GATC	2 cut(s)	52, 348
MboII	GAAGA	1 cut(s)	334
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	3 cut(s)	298, 337, 475
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	6 cut(s)	140, 254, 347, 418, 439, 499
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	5 cut(s)	27, 48, 90, 374, 553
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	5 cut(s)	27, 48, 90, 374, 553
NdeII	GATC	2 cut(s)	52, 348
NlaIII	CATG	3 cut(s)	59, 136, 431
NlaIV	GGNNCC	4 cut(s)	151, 181, 335, 472
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	25
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	4 cut(s)	25, 46, 88, 372
PspGI	CCWGG	4 cut(s)	25, 46, 88, 372
PspN4I	GGNNCC	4 cut(s)	151, 181, 335, 472
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	317
Sau3AI	GATC	2 cut(s)	52, 348
Sau96I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	5 cut(s)	27, 48, 90, 374, 553
SduI	GDGCHC	3 cut(s)	298, 337, 475
SetI	ASST	9 cut(s)	110, 151, 259, 265, 304, 410, 461, 483, 528
SfaNI	GCATC	2 cut(s)	430, 518
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	2 cut(s)	86, 523
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	1 cut(s)	247
StyD4I	CCNGG	4 cut(s)	25, 46, 88, 372
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	434
TscAI	CASTG	4 cut(s)	190, 286, 468, 508
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	27, 230
TspRI	CASTG	4 cut(s)	190, 286, 468, 508
VpaK11BI	GGWCC	2 cut(s)	86, 523
XceI	RCATGY	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.