Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006051

Physical Location & Seq

Genomic Coordinates Forward (+)

39155378 .. 39157397

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTATGGAGATGAAAAGGGAAATCCTGGATTTCAAGCTGGTTCGCCAGGGGATCATGGTGGATATGCTTACTTCACCAATGGTGGACCAGGACAAAACCAGTTTACCTACAGACCAAGTGATTGGCAGAGCATGGGTGGGCAGGGAGGTTCCCAATCGTTTTCCTTTTCCTTTGGTGGCCCCAGTGGTGGTCCAAGTCCATTCGGTTTTGATATGAACGACATTTTCTCAAACTTTTTTGGGGATAATTCTGGAGCTGGAGGTCAGTTTGGTGGTTTCACTGGTTCGAGCAGGGCTCGAGCTGGCTCTCGGAGTACTCCGACGAGCATTAGGGCCCTCAGTTCACAGGTCTATAAGAAAGAAGTAGTTGACCAGGGAATGACTTGGCTCTTGTTCTCTTATACGACCTCTTTGAAGGGGCATCAGCATGTTGAATCTCTGGAAGAGGAAGTTGCCAGCTCACTGAAGGGTGCCCTAAAGGTTGGAAGTGTAAACTGTGACACAGAGGCATCACTCTGCAAGGACCTTGGCATATATCCACGCAGAATGCCCAGGGTATTTGTTTATTCATACAAAGCGAGTGAGAAGGGTTTGTTGGTTGAGTATGATGGCGATTGGGGTGCTAAACCTTTAAAATCCTTTTGCCAAGACCATTTGCCAAGGTTTTCGAAGAGGGTCGACTTGAACTTCTTAAAGTCCTCCTCTGTCACAGTCCAGGATGCTTCTGATCCAACAGTGAAGAAACTAGGAGTTGATGCACTACCAGCTATAGTTGGTTGGCTATCAAATGGGGAGGAGCGTGTCTTAAAAACAGGCATCGCTGTTAAAGATTTGAAATCAGCAATTCATGATCTCAGTGGTTTAATTGAAGGTTTTGAGAAGAAGAACAAGAAGGCGCGCAGCTTCAGATCAGTCCAAGAAAGCATCAACCGATTCCAGGGAGAATCAGATACCTCTACTGACAAAATCCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016491 GO:0022414 GO:0030054 GO:0030154 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0034605 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0051716 GO:0055044 GO:0055114 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

325

Amino Acids

35.17

Weight (kDa)

8.27

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08970 AT3G08970
fragaria_vesca	FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110
malus_domestica	MD00G1062300.v1.1 MD12G1172300.v1.1
prunus_persica	Prupe.6G280600_v2.0.a1 Prupe.6G280600_v2.0.a1
pyrus_communis	pycom04g14320 pycom12g16350
rosa_chinensis	RchiOBHm_Chr3g0462541
rosa_laevigata	RLG00000024850
rosa_multiflora	Rmu_co8373099.1_g000001 Rmu_sc0003624.1_g000017 Rmu_sc0023157.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417410 Rroxscaffold_6G00417430
rosa_rugosa	Rorug03G0057500
rosa_samantha	Rh3AG115400 Rh3BG118800 Rh3CG122200 Rh3DG120900
rosa_wichuraiana	Rw3G009770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	898
AclWI	GGATC	2 cut(s)	60, 722
AcuI	CTGAAG	2 cut(s)	485, 889
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	188, 937
AgsI	TTSAA	6 cut(s)	35, 415, 434, 685, 835, 869
AjnI	CCWGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	6 cut(s)	38, 257, 302, 459, 767, 903
AluI	AGCT	6 cut(s)	38, 257, 302, 459, 767, 903
AlwI	GGATC	2 cut(s)	60, 722
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	178, 333
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	900
AspLEI	GCGC	2 cut(s)	898, 900
AspS9I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
AsuHPI	GGTGA	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	3 cut(s)	86, 191, 523
BaeGI	GKGCMC	2 cut(s)	337, 475
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	298, 337
BbvI	GCAGC	1 cut(s)	912
BccI	CCATC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	2 cut(s)	109, 768
BisI	GCNGC	1 cut(s)	901
BlsI	GCNGC	1 cut(s)	902
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
Bme18I	GGWCC	3 cut(s)	86, 191, 523
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
BmiI	GGNNCC	4 cut(s)	151, 181, 335, 472
BmrFI	CCNGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	6 cut(s)	430, 518, 709, 745, 825, 933
BmuI	ACTGGG	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	2 cut(s)	273, 279
Bpu14I	TTCGAA	1 cut(s)	668
BsaJI	CCNNGG	7 cut(s)	47, 373, 526, 551, 552, 659, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 937
Bse1I	ACTGG	3 cut(s)	100, 183, 286
BseBI	CCWGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
BseDI	CCNNGG	7 cut(s)	47, 373, 526, 551, 552, 659, 937
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	2 cut(s)	188, 937
BseMII	CTCAG	2 cut(s)	352, 868
BseNI	ACTGG	3 cut(s)	100, 183, 286
BsePI	GCGCGC	1 cut(s)	896
BseRI	GAGGAG	2 cut(s)	691, 809
BseSI	GKGCMC	2 cut(s)	337, 475
BseXI	GCAGC	1 cut(s)	912
Bsh1236I	CGCG	1 cut(s)	898
BshFI	GGCC	2 cut(s)	180, 335
BshNI	GGYRCC	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	188, 937
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	180, 335
BsoBI	CYCGRG	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	668
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	298, 337, 475
Bsp143I	GATC	4 cut(s)	52, 727, 850, 908
BspANI	GGCC	2 cut(s)	180, 335
BspCNI	CTCAG	2 cut(s)	351, 867
BspFNI	CGCG	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	4 cut(s)	151, 181, 335, 472
BspPI	GGATC	2 cut(s)	60, 722
BspT104I	TTCGAA	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	100, 183, 286
BssECI	CCNNGG	7 cut(s)	47, 373, 526, 551, 552, 659, 937
BssHII	GCGCGC	1 cut(s)	896
BssMI	GATC	4 cut(s)	52, 727, 850, 908
BssT1I	CCWWGG	2 cut(s)	526, 659
Bst2UI	CCWGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
Bst4CI	ACNGT	3 cut(s)	497, 712, 736
Bst6I	CTCTTC	2 cut(s)	438, 665
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	304, 457, 898
BstDEI	CTNAG	2 cut(s)	338, 854
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	898
BstHHI	GCGC	2 cut(s)	898, 900
BstKTI	GATC	4 cut(s)	55, 730, 853, 911
BstMBI	GATC	4 cut(s)	52, 727, 850, 908
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
BstSFI	CTRYAG	2 cut(s)	109, 768
BstSLI	GKGCMC	2 cut(s)	337, 475
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	1 cut(s)	912
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	180, 335
BtgZI	GCGATG	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	5 cut(s)	190, 279, 461, 741, 862
Cac8I	GCNNGC	3 cut(s)	304, 457, 898
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	2 cut(s)	898, 900
Cfr13I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	56, 133, 428, 848
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	338, 854
DpnI	GATC	4 cut(s)	54, 729, 852, 910
DpnII	GATC	4 cut(s)	52, 727, 850, 908
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	438, 665
EarI	CTCTTC	2 cut(s)	438, 665
Eco130I	CCWWGG	2 cut(s)	526, 659
Eco24I	GRGCYC	2 cut(s)	298, 337
Eco47I	GGWCC	3 cut(s)	86, 191, 523
Eco57I	CTGAAG	2 cut(s)	485, 889
Eco88I	CYCGRG	1 cut(s)	297
EcoO109I	RGGNCCY	3 cut(s)	333, 334, 523
EcoRII	CCWGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
EcoT14I	CCWWGG	2 cut(s)	526, 659
EcoT38I	GRGCYC	2 cut(s)	298, 337
ErhI	CCWWGG	2 cut(s)	526, 659
FaeI	CATG	4 cut(s)	59, 136, 431, 851
FatI	CATG	4 cut(s)	55, 132, 427, 847
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	901
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	2 cut(s)	298, 337
Fsp4HI	GCNGC	1 cut(s)	901
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	2 cut(s)	897, 899
GluI	GCNGC	1 cut(s)	901
GsuI	CTGGAG	2 cut(s)	273, 279
HaeIII	GGCC	2 cut(s)	180, 335
HhaI	GCGC	2 cut(s)	898, 900
Hin1II	CATG	4 cut(s)	59, 136, 431, 851
Hin6I	GCGC	2 cut(s)	896, 898
HinP1I	GCGC	2 cut(s)	896, 898
HincII	GTYRAC	2 cut(s)	370, 679
HindII	GTYRAC	2 cut(s)	370, 679
HinfI	GANTC	3 cut(s)	434, 933, 944
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	6 cut(s)	86, 105, 344, 370, 493, 679
Hpy188I	TCNGA	5 cut(s)	312, 321, 727, 908, 949
Hpy188III	TCNNGA	3 cut(s)	252, 440, 848
Hpy8I	GTNNAC	6 cut(s)	86, 105, 344, 370, 493, 679
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	5 cut(s)	409, 460, 580, 863, 886
HpyCH4III	ACNGT	3 cut(s)	497, 712, 736
HpyCH4V	TGCA	2 cut(s)	519, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	2 cut(s)	338, 854
Hsp92II	CATG	4 cut(s)	59, 136, 431, 851
HspAI	GCGC	2 cut(s)	896, 898
Kzo9I	GATC	4 cut(s)	52, 727, 850, 908
LmnI	GCTCC	2 cut(s)	254, 796
Lsp1109I	GCAGC	1 cut(s)	912
LweI	GCATC	6 cut(s)	430, 518, 709, 745, 825, 933
MaeI	CTAG	1 cut(s)	746
MaeIII	GTNAC	2 cut(s)	497, 706
MalI	GATC	4 cut(s)	54, 729, 852, 910
MboI	GATC	4 cut(s)	52, 727, 850, 908
MboII	GAAGA	5 cut(s)	455, 682, 751, 892, 895
MhlI	GDGCHC	3 cut(s)	298, 337, 475
MluCI	AATT	4 cut(s)	247, 843, 864, 971
MmeI	TCCRAC	3 cut(s)	344, 463, 755
MseI	TTAA	5 cut(s)	632, 692, 806, 825, 863
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	1 cut(s)	764
NdeII	GATC	4 cut(s)	52, 727, 850, 908
NlaIII	CATG	4 cut(s)	59, 136, 431, 851
NlaIV	GGNNCC	4 cut(s)	151, 181, 335, 472
NmuCI	GTSAC	2 cut(s)	497, 706
NspI	RCATGY	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	847
PasI	CCCWGGG	1 cut(s)	552
PauI	GCGCGC	1 cut(s)	896
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	434, 933, 944
PfoI	TCCNGGA	2 cut(s)	25, 714
PkrI	GCNGC	1 cut(s)	902
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
PspGI	CCWGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
PspN4I	GGNNCC	4 cut(s)	151, 181, 335, 472
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
PspPPI	RGGWCCY	1 cut(s)	523
PspXI	VCTCGAGB	1 cut(s)	297
PteI	GCGCGC	1 cut(s)	896
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	5 cut(s)	632, 692, 806, 825, 863
SatI	GCNGC	1 cut(s)	901
Sau3AI	GATC	4 cut(s)	52, 727, 850, 908
Sau96I	GGNCC	6 cut(s)	86, 179, 191, 333, 334, 523
ScaI	AGTACT	1 cut(s)	316
ScrFI	CCNGG	7 cut(s)	27, 48, 90, 374, 553, 716, 938
SduI	GDGCHC	3 cut(s)	298, 337, 475
SfaNI	GCATC	6 cut(s)	430, 518, 709, 745, 825, 933
SfcI	CTRYAG	2 cut(s)	109, 768
Sfr274I	CTCGAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	3 cut(s)	86, 191, 523
SlaI	CTCGAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	247, 843, 864, 971
SspMI	CTAG	1 cut(s)	746
StyD4I	CCNGG	7 cut(s)	25, 46, 88, 372, 551, 714, 936
StyI	CCWWGG	2 cut(s)	526, 659
TaaI	ACNGT	3 cut(s)	497, 712, 736
TaqI	TCGA	4 cut(s)	287, 298, 668, 678
TasI	AATT	4 cut(s)	247, 843, 864, 971
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	434, 933, 944
Tru1I	TTAA	5 cut(s)	632, 692, 806, 825, 863
Tru9I	TTAA	5 cut(s)	632, 692, 806, 825, 863
TscAI	CASTG	5 cut(s)	190, 286, 468, 741, 862
TseFI	GTSAC	2 cut(s)	497, 706
TseI	GCWGC	1 cut(s)	900
Tsp45I	GTSAC	2 cut(s)	497, 706
TspDTI	ATGAA	4 cut(s)	27, 230, 558, 836
TspRI	CASTG	5 cut(s)	190, 286, 468, 741, 862
VpaK11BI	GGWCC	3 cut(s)	86, 191, 523
XceI	RCATGY	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.