Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006051

Physical Location & Seq

Genomic Coordinates Forward (+)

39138937 .. 39143032

Gene Structure 4096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGTTTAACCGGCGACTAGTATCTCTGATCATCGTGACGGCGTCGTTGTTCCTACTCACCACCGACGCCAAAACCTTAGACCCCTACAAGGTTCTTGGAGTGGAGCGAAATGCGAGTCAACGTGAAATTCAGAAGGCTTTCCACAAGCTTTCTCTTCAATATCACCCAGACAAGAATAAAGCCAAGGGAGCTCAAGCAAAGTTTGCTGAGATAAATAATGCGTATGAGATTTTATCTGATGAGGAGAAGAGGAAAAATTATGATATGTATGGAGATGAAAAGGGAAATCCCGGATTTCAATCTGGTTCACCAGGGGATCATGGTGGATATACTTACTTCACCAATGGTGGACCAGGACAAAACCAGTTTACCTACAGACCAAGTGATTGGCAGAGCATGGGTGGGCAGGGAGGTTCCCAATCGTTTTCCTTTTCCTTTGGTGGCCCCAGTGGTGGTCCAAGTCCATTCGGTTTTGATATGAACGACATTTTCTCAAACTTTTTTGGGGATAATTCTGGAGCTGGAGGTCAGTTTGGTGGTTTCACTGGTTCAAGCAGAGCTCGAGCTGGCTCTCGGAGTACTCCGACGAGCATTAGGGCCCTCAGTTCACAGGTCTATAAGAAAGAAGTAGTTGACCAGGGAATGACTTGGCTCTTGTTCTCTTATACGACCTCTTTGAAGGGGCATCAGCATGTTGAATCTCTAGTAGAGGAAGTTGCCAGCTCACTGAAGGGTGCCCTAAAGGTTGGAAGTGTAAACTGTGACACAGAGGCATCACTCTGCAAGGACCTTGGCATATATCCACGCAGAATGCCCAGGGTATTTGTTTATTCATACAAAGCGAGTGAGAAAGGTTTGTTGGTTGAGTATGATGGTGATTGGGGTGCTAAACCTTTAAAATCCTTTTGCCAAGACCATTTGCCAAGGTTTTCAAAGAGGGTCGACTTGAACTTCTTAAAGTCTTCCTCTGTCACAGTTGATAAATTGCCTACGGTGGTCCTTCTCTCCACCAAAAAAGATACTCCTGTTATCTGGCGCGTCCTCAGTGGACTGTATCACAAACGCATCATTTTCTATGATGTACAGGTCCAGGATGCTTCTGATCCAACAGTGAAGAAACTAGGAGTCGATGCACTACCAGCTATAGTTGGTTGGCTATCAAATGGGGAGAAGCATGTCTTAAAAACAGACATTGCAGTTAAAGATTTGAAATCAGCAATTCATGATCTCAGTGGTTTAATTGAAGGTTTTGAGAAGAAGAACAAGAAGGCAGCTTCAGAGCAGTCCAAGAAAGCATCAACTGATTCCGGGGAGAATCAGATACCTCTACTGACCAAATCTAATTTTGATTCTCTCTGTGGTGACCAAATTCCAGTTTGCATCATTGGTGCATTCAGATCTTCCAAAGAAAGAAAGAGGTTGGAATCAGTTCTGAACACGGTCTCTCAGAAATCATTATCAAGGCGACAGAACTCGGCGCGCGGAAGGGATTCCGTCTCCTACACTCTCTTGGATGCCACCAAGCAGGCGTCATTCTTAAACGCATTCGACAAAGCAGGATTTAAATCCTTAGATAAGATCTTGGTGGCCTACAAACCTCGGAAGGGGACTTTTGCAGCATTTGAGGGTGAAATAACTACAGAAGAAGCAGAGAAGTTTATTAGTGCAGTTCTTAACGGGGACATCCGATTCACCAAAACACGACAGAGCCCCCTTCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016491 GO:0022414 GO:0030054 GO:0030154 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0034605 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0051716 GO:0055044 GO:0055114 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

574

Amino Acids

63.17

Weight (kDa)

9.38

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	27 - 88	1.8e-26	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08970 AT3G08970
fragaria_vesca	FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110 FvH4_6g11110
malus_domestica	MD00G1062300.v1.1 MD12G1172300.v1.1
prunus_persica	Prupe.6G280600_v2.0.a1 Prupe.6G280600_v2.0.a1
pyrus_communis	pycom04g14320 pycom12g16350
rosa_chinensis	RchiOBHm_Chr3g0462541
rosa_laevigata	RLG00000024850
rosa_multiflora	Rmu_co8373099.1_g000001 Rmu_sc0003624.1_g000017 Rmu_sc0023157.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417410 Rroxscaffold_6G00417430
rosa_rugosa	Rorug03G0057500
rosa_samantha	Rh3AG115400 Rh3BG118800 Rh3CG122200 Rh3DG120900
rosa_wichuraiana	Rw3G009770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	942
AccII	CGCG	3 cut(s)	1038, 1480, 1482
AciI	CCGC	1 cut(s)	1482
AclWI	GGATC	2 cut(s)	324, 1097
AcsI	RAATTY	2 cut(s)	126, 1368
AcuI	CTGAAG	2 cut(s)	749, 1260
AcyI	GRCGYC	3 cut(s)	41, 66, 1529
AfaI	GTAC	2 cut(s)	580, 1083
AfiI	CCNNNNNNNGG	3 cut(s)	88, 452, 1604
AgsI	TTSAA	9 cut(s)	158, 299, 552, 679, 698, 933, 949, 1210, 1244
AhlI	ACTAGT	1 cut(s)	16
AjnI	CCWGG	5 cut(s)	310, 352, 636, 815, 1089
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	8 cut(s)	148, 191, 521, 560, 566, 723, 1142, 1274
AluI	AGCT	8 cut(s)	148, 191, 521, 560, 566, 723, 1142, 1274
Alw21I	GWGCWC	2 cut(s)	193, 562
Alw26I	GTCTC	2 cut(s)	1447, 1501
AlwI	GGATC	2 cut(s)	324, 1097
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	3 cut(s)	442, 597, 1587
ApaI	GGGCCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	1271, 1616
ApoI	RAATTY	2 cut(s)	126, 1368
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
Asp700I	GAANNNNTTC	3 cut(s)	137, 1428, 1489
AspLEI	GCGC	3 cut(s)	1038, 1480, 1482
AspS9I	GGNCC	8 cut(s)	350, 443, 455, 597, 598, 787, 997, 1087
AsuC2I	CCSGG	2 cut(s)	291, 1309
AsuHPI	GGTGA	8 cut(s)	49, 155, 300, 331, 887, 1373, 1640, 1684
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	5 cut(s)	350, 455, 787, 997, 1087
BaeGI	GKGCMC	2 cut(s)	601, 739
BaeI	ACNNNNGTAYC	2 cut(s)	1011, 1044
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	4 cut(s)	193, 562, 601, 1712
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	2 cut(s)	193, 562
BbvI	GCAGC	2 cut(s)	1283, 1628
BccI	CCATC	1 cut(s)	866
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	5 cut(s)	312, 354, 638, 817, 1091
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	291, 1309
BcoDI	GTCTC	2 cut(s)	1447, 1501
BcuI	ACTAGT	1 cut(s)	16
BfaI	CTAG	3 cut(s)	17, 704, 1121
BfmI	CTRYAG	3 cut(s)	373, 1143, 1638
BglII	AGATCT	2 cut(s)	1397, 1578
BisI	GCNGC	2 cut(s)	1272, 1617
BlsI	GCNGC	2 cut(s)	1273, 1618
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	7 cut(s)	291, 312, 354, 638, 817, 1091, 1309
Bme18I	GGWCC	5 cut(s)	350, 455, 787, 997, 1087
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	8 cut(s)	350, 443, 455, 597, 598, 787, 997, 1087
BmiI	GGNNCC	4 cut(s)	415, 445, 599, 736
BmrFI	CCNGG	7 cut(s)	291, 312, 354, 638, 817, 1091, 1309
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	8 cut(s)	694, 782, 1074, 1084, 1120, 1304, 1389, 1504
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	954
BpmI	CTGGAG	2 cut(s)	537, 543
BpuEI	CTTGAG	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	291, 1309
BsaBI	GATNNNNATC	2 cut(s)	298, 1564
BsaHI	GRCGYC	3 cut(s)	41, 66, 1529
BsaI	GGTCTC	1 cut(s)	1447
BsaJI	CCNNGG	9 cut(s)	183, 311, 637, 790, 815, 816, 923, 1308, 1598
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 452, 1604
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	4 cut(s)	364, 447, 550, 1373
Bse3DI	GCAATG	1 cut(s)	1191
Bse8I	GATNNNNATC	2 cut(s)	298, 1564
BseBI	CCWGG	5 cut(s)	312, 354, 638, 817, 1091
BseDI	CCNNGG	9 cut(s)	183, 311, 637, 790, 815, 816, 923, 1308, 1598
BseGI	GGATG	3 cut(s)	1099, 1519, 1683
BseJI	GATNNNNATC	2 cut(s)	298, 1564
BseLI	CCNNNNNNNGG	3 cut(s)	88, 452, 1604
BseMI	GCAATG	1 cut(s)	1191
BseMII	CTCAG	5 cut(s)	198, 616, 1057, 1243, 1460
BseNI	ACTGG	4 cut(s)	364, 447, 550, 1373
BsePI	GCGCGC	1 cut(s)	1478
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	2 cut(s)	601, 739
BseXI	GCAGC	2 cut(s)	1283, 1628
BsgI	GTGCAG	1 cut(s)	1686
Bsh1236I	CGCG	3 cut(s)	1038, 1480, 1482
BshFI	GGCC	3 cut(s)	444, 599, 1589
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	2 cut(s)	193, 562
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	10, 291, 1308
BslFI	GGGAC	2 cut(s)	1621, 1694
BslI	CCNNNNNNNGG	3 cut(s)	88, 452, 1604
BsmAI	GTCTC	2 cut(s)	1447, 1501
BsmBI	CGTCTC	1 cut(s)	1501
BsmFI	GGGAC	2 cut(s)	1621, 1694
BsmI	GAATGC	3 cut(s)	816, 1391, 1544
BsnI	GGCC	3 cut(s)	444, 599, 1589
Bso31I	GGTCTC	1 cut(s)	1447
BsoBI	CYCGRG	1 cut(s)	561
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	5 cut(s)	193, 562, 601, 739, 1712
Bsp1407I	TGTACA	1 cut(s)	1081
Bsp143I	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
BspACI	CCGC	1 cut(s)	1482
BspANI	GGCC	3 cut(s)	444, 599, 1589
BspCNI	CTCAG	5 cut(s)	199, 615, 1056, 1242, 1459
BspFNI	CGCG	3 cut(s)	1038, 1480, 1482
BspHI	TCATGA	1 cut(s)	1222
BspLI	GGNNCC	4 cut(s)	415, 445, 599, 736
BspPI	GGATC	2 cut(s)	324, 1097
BspT107I	GGYRCC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	1447
BsrDI	GCAATG	1 cut(s)	1191
BsrFI	RCCGGY	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	1081
BsrI	ACTGG	4 cut(s)	364, 447, 550, 1373
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	9 cut(s)	183, 311, 637, 790, 815, 816, 923, 1308, 1598
BssHII	GCGCGC	1 cut(s)	1478
BssMI	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
BssNI	GRCGYC	3 cut(s)	41, 66, 1529
BssT1I	CCWWGG	3 cut(s)	183, 790, 923
Bst2UI	CCWGG	5 cut(s)	312, 354, 638, 817, 1091
Bst4CI	ACNGT	6 cut(s)	761, 976, 994, 1053, 1111, 1441
Bst6I	CTCTTC	2 cut(s)	159, 242
BstACI	GRCGYC	3 cut(s)	41, 66, 1529
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	1081
BstC8I	GCNNGC	4 cut(s)	568, 721, 1480, 1527
BstDEI	CTNAG	7 cut(s)	76, 207, 602, 1043, 1229, 1446, 1570
BstEII	GGTNACC	1 cut(s)	1361
BstF5I	GGATG	3 cut(s)	1099, 1519, 1683
BstFNI	CGCG	3 cut(s)	1038, 1480, 1482
BstHHI	GCGC	3 cut(s)	1038, 1480, 1482
BstKTI	GATC	6 cut(s)	30, 319, 1105, 1228, 1400, 1581
BstMAI	GTCTC	2 cut(s)	1447, 1501
BstMBI	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 203, 1139
BstNI	CCWGG	5 cut(s)	312, 354, 638, 817, 1091
BstNSI	RCATGY	2 cut(s)	695, 1178
BstPI	GGTNACC	1 cut(s)	1361
BstSCI	CCNGG	7 cut(s)	289, 310, 352, 636, 815, 1089, 1307
BstSFI	CTRYAG	3 cut(s)	373, 1143, 1638
BstSLI	GKGCMC	2 cut(s)	601, 739
BstUI	CGCG	3 cut(s)	1038, 1480, 1482
BstV1I	GCAGC	2 cut(s)	1283, 1628
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	2 cut(s)	1397, 1578
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	2 cut(s)	1397, 1578
BsuRI	GGCC	3 cut(s)	444, 599, 1589
BtsCI	GGATG	3 cut(s)	1099, 1519, 1683
BtsIMutI	CAGTG	6 cut(s)	454, 543, 725, 1051, 1116, 1237
Cac8I	GCNNGC	4 cut(s)	568, 721, 1480, 1527
CciI	TCATGA	1 cut(s)	1222
CfoI	GCGC	3 cut(s)	1038, 1480, 1482
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	8 cut(s)	350, 443, 455, 597, 598, 787, 997, 1087
CseI	GACGC	4 cut(s)	30, 74, 1027, 1518
Csp6I	GTAC	2 cut(s)	579, 1082
CviAII	CATG	5 cut(s)	320, 397, 692, 1175, 1223
CviQI	GTAC	2 cut(s)	579, 1082
DdeI	CTNAG	7 cut(s)	76, 207, 602, 1043, 1229, 1446, 1570
DpnI	GATC	6 cut(s)	29, 318, 1104, 1227, 1399, 1580
DpnII	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
DraI	TTTAAA	2 cut(s)	897, 1564
Eam1104I	CTCTTC	2 cut(s)	159, 242
EarI	CTCTTC	2 cut(s)	159, 242
Ecl136II	GAGCTC	2 cut(s)	191, 560
Eco130I	CCWWGG	3 cut(s)	183, 790, 923
Eco24I	GRGCYC	4 cut(s)	193, 562, 601, 1712
Eco31I	GGTCTC	1 cut(s)	1447
Eco47I	GGWCC	5 cut(s)	350, 455, 787, 997, 1087
Eco53kI	GAGCTC	2 cut(s)	191, 560
Eco57I	CTGAAG	2 cut(s)	749, 1260
Eco88I	CYCGRG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	1361
EcoICRI	GAGCTC	2 cut(s)	191, 560
EcoO109I	RGGNCCY	3 cut(s)	597, 598, 787
EcoO65I	GGTNACC	1 cut(s)	1361
EcoRII	CCWGG	5 cut(s)	310, 352, 636, 815, 1089
EcoT14I	CCWWGG	3 cut(s)	183, 790, 923
EcoT38I	GRGCYC	4 cut(s)	193, 562, 601, 1712
ErhI	CCWWGG	3 cut(s)	183, 790, 923
Esp3I	CGTCTC	1 cut(s)	1501
FaeI	CATG	5 cut(s)	323, 400, 695, 1178, 1226
FalI	AAGNNNNNCTT	2 cut(s)	1163, 1195
FaqI	GGGAC	2 cut(s)	1621, 1694
FatI	CATG	5 cut(s)	319, 396, 691, 1174, 1222
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	2 cut(s)	1272, 1617
FokI	GGATG	3 cut(s)	1106, 1526, 1670
FriOI	GRGCYC	4 cut(s)	193, 562, 601, 1712
Fsp4HI	GCNGC	2 cut(s)	1272, 1617
FspBI	CTAG	3 cut(s)	17, 704, 1121
GlaI	GCGC	3 cut(s)	1037, 1479, 1481
GluI	GCNGC	2 cut(s)	1272, 1617
GsuI	CTGGAG	2 cut(s)	537, 543
HaeIII	GGCC	3 cut(s)	444, 599, 1589
HapII	CCGG	3 cut(s)	10, 291, 1308
HgaI	GACGC	4 cut(s)	30, 74, 1027, 1518
HhaI	GCGC	3 cut(s)	1038, 1480, 1482
Hin1I	GRCGYC	3 cut(s)	41, 66, 1529
Hin1II	CATG	5 cut(s)	323, 400, 695, 1178, 1226
Hin6I	GCGC	3 cut(s)	1036, 1478, 1480
HinP1I	GCGC	3 cut(s)	1036, 1478, 1480
HincII	GTYRAC	3 cut(s)	119, 634, 943
HindII	GTYRAC	3 cut(s)	119, 634, 943
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	9 cut(s)	115, 698, 1125, 1304, 1315, 1349, 1424, 1490, 1689
HpaII	CCGG	3 cut(s)	10, 291, 1308
HphI	GGTGA	8 cut(s)	49, 155, 300, 331, 887, 1373, 1640, 1684
Hpy166II	GTNNAC	9 cut(s)	119, 308, 350, 369, 608, 634, 757, 943, 1049
Hpy188III	TCNNGA	3 cut(s)	34, 516, 1223
Hpy8I	GTNNAC	9 cut(s)	119, 308, 350, 369, 608, 634, 757, 943, 1049
Hpy99I	CGWCG	3 cut(s)	46, 68, 589
HpyAV	CCTTC	9 cut(s)	127, 673, 724, 1010, 1238, 1261, 1479, 1597, 1724
HpyCH4III	ACNGT	6 cut(s)	761, 976, 994, 1053, 1111, 1441
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	7 cut(s)	783, 1133, 1196, 1380, 1391, 1616, 1667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 203, 1139
HpyF3I	CTNAG	7 cut(s)	76, 207, 602, 1043, 1229, 1446, 1570
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	3 cut(s)	41, 66, 1529
Hsp92II	CATG	5 cut(s)	323, 400, 695, 1178, 1226
HspAI	GCGC	3 cut(s)	1036, 1478, 1480
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
LmnI	GCTCC	3 cut(s)	103, 188, 518
Lsp1109I	GCAGC	2 cut(s)	1283, 1628
LweI	GCATC	8 cut(s)	694, 782, 1074, 1084, 1120, 1304, 1389, 1504
MaeI	CTAG	3 cut(s)	17, 704, 1121
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	34, 761, 970, 1361
MalI	GATC	6 cut(s)	29, 318, 1104, 1227, 1399, 1580
MboI	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
MboII	GAAGA	8 cut(s)	146, 259, 954, 1126, 1267, 1270, 1392, 1655
MflI	RGATCY	2 cut(s)	1397, 1578
MhlI	GDGCHC	5 cut(s)	193, 562, 601, 739, 1712
MluCI	AATT	8 cut(s)	126, 256, 511, 983, 1218, 1239, 1342, 1368
MlyI	GAGTC	2 cut(s)	124, 1134
MmeI	TCCRAC	4 cut(s)	608, 727, 1130, 1401
MroXI	GAANNNNTTC	3 cut(s)	137, 1428, 1489
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	3 cut(s)	10, 291, 1308
MspR9I	CCNGG	7 cut(s)	291, 312, 354, 638, 817, 1091, 1309
Mva1269I	GAATGC	3 cut(s)	816, 1391, 1544
MvaI	CCWGG	5 cut(s)	312, 354, 638, 817, 1091
MvnI	CGCG	3 cut(s)	1038, 1480, 1482
MwoI	GCNNNNNNNGC	3 cut(s)	188, 203, 1139
NciI	CCSGG	2 cut(s)	291, 1309
NdeII	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
NlaIII	CATG	5 cut(s)	323, 400, 695, 1178, 1226
NlaIV	GGNNCC	4 cut(s)	415, 445, 599, 736
NmeAIII	GCCGAG	1 cut(s)	1454
NmuCI	GTSAC	4 cut(s)	34, 761, 970, 1361
NspI	RCATGY	2 cut(s)	695, 1178
PaeR7I	CTCGAG	1 cut(s)	561
PagI	TCATGA	1 cut(s)	1222
PasI	CCCWGGG	1 cut(s)	816
PauI	GCGCGC	1 cut(s)	1478
PctI	GAATGC	3 cut(s)	816, 1391, 1544
PdmI	GAANNNNTTC	3 cut(s)	137, 1428, 1489
PfeI	GAWTC	7 cut(s)	698, 1304, 1315, 1349, 1424, 1490, 1689
PflFI	GACNNNGTC	1 cut(s)	40
PfoI	TCCNGGA	2 cut(s)	289, 1089
PkrI	GCNGC	2 cut(s)	1273, 1618
PleI	GAGTC	2 cut(s)	123, 1133
PpsI	GAGTC	2 cut(s)	123, 1133
PpuMI	RGGWCCY	1 cut(s)	787
Psp124BI	GAGCTC	2 cut(s)	193, 562
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	5 cut(s)	310, 352, 636, 815, 1089
PspEI	GGTNACC	1 cut(s)	1361
PspGI	CCWGG	5 cut(s)	310, 352, 636, 815, 1089
PspN4I	GGNNCC	4 cut(s)	415, 445, 599, 736
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	8 cut(s)	350, 443, 455, 597, 598, 787, 997, 1087
PspPPI	RGGWCCY	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	1397, 1578
PsyI	GACNNNGTC	1 cut(s)	40
PteI	GCGCGC	1 cut(s)	1478
RsaI	GTAC	2 cut(s)	580, 1083
RsaNI	GTAC	2 cut(s)	579, 1082
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	2 cut(s)	193, 562
SalI	GTCGAC	1 cut(s)	941
SatI	GCNGC	2 cut(s)	1272, 1617
Sau3AI	GATC	6 cut(s)	27, 316, 1102, 1225, 1397, 1578
Sau96I	GGNCC	8 cut(s)	350, 443, 455, 597, 598, 787, 997, 1087
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	2 cut(s)	124, 1134
ScrFI	CCNGG	7 cut(s)	291, 312, 354, 638, 817, 1091, 1309
SduI	GDGCHC	5 cut(s)	193, 562, 601, 739, 1712
SfaNI	GCATC	8 cut(s)	694, 782, 1074, 1084, 1120, 1304, 1389, 1504
SfcI	CTRYAG	3 cut(s)	373, 1143, 1638
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	5 cut(s)	350, 455, 787, 997, 1087
SlaI	CTCGAG	1 cut(s)	561
SmiI	ATTTAAAT	1 cut(s)	1564
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	192, 561
SmoI	CTYRAG	2 cut(s)	192, 561
SpeI	ACTAGT	1 cut(s)	16
Sse9I	AATT	8 cut(s)	126, 256, 511, 983, 1218, 1239, 1342, 1368
SsiI	CCGC	1 cut(s)	1482
SspMI	CTAG	3 cut(s)	17, 704, 1121
SstI	GAGCTC	2 cut(s)	193, 562
StyD4I	CCNGG	7 cut(s)	289, 310, 352, 636, 815, 1089, 1307
StyI	CCWWGG	3 cut(s)	183, 790, 923
SwaI	ATTTAAAT	1 cut(s)	1564
TaaI	ACNGT	6 cut(s)	761, 976, 994, 1053, 1111, 1441
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	4 cut(s)	562, 942, 1128, 1548
TasI	AATT	8 cut(s)	126, 256, 511, 983, 1218, 1239, 1342, 1368
TatI	WGTACW	2 cut(s)	578, 1081
TfiI	GAWTC	7 cut(s)	698, 1304, 1315, 1349, 1424, 1490, 1689
TscAI	CASTG	6 cut(s)	454, 550, 732, 1051, 1116, 1237
TseFI	GTSAC	4 cut(s)	34, 761, 970, 1361
TseI	GCWGC	2 cut(s)	1271, 1616
Tsp45I	GTSAC	4 cut(s)	34, 761, 970, 1361
TspDTI	ATGAA	4 cut(s)	291, 494, 822, 1211
TspGWI	ACGGA	1 cut(s)	1483
TspRI	CASTG	6 cut(s)	454, 550, 732, 1051, 1116, 1237
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	5 cut(s)	350, 455, 787, 997, 1087
XapI	RAATTY	2 cut(s)	126, 1368
XceI	RCATGY	2 cut(s)	695, 1178
XhoI	CTCGAG	1 cut(s)	561
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	3 cut(s)	137, 1428, 1489
XspI	CTAG	3 cut(s)	17, 704, 1121
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.