Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383769.1

Orthogroup ID

OG0011220

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 696

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

aagttcggttgaagatagcgaaaggcattgcccgggggctaagctacatccacgagaagaaaaacgtgcatggaaatataaaaccaagcaacattcttctaaactccgatttcgaccctgtaatcagcgatttcggccttgacaagctaatgttaggtggcatgatcagtcaaaaaggtagcggttctgctcgagggtatttcggaagcctaaagtcctcgggggctcgcgaaggtattaatgaaatgctaccgcctgttaccggcagccccatcgccacatcctcctccgcgggaggagcattgtcgccttatcatgccccggagtccttgaagaacttgaagccgaaccccaggtgggacgtgtactcttttggcatagttttgctagagcttctcacgggtagggtatttacggaaagggagctggcggaccagtggaccgccggttcactgatgggggagaagaaccgggttttggttatggtcgacgtggcgattagggctgaggtggagggcagggaagatgccttgcaggcttgtttgaagctagggtttggttgtgctagttttgttccgcagaaaagaccaaccatgaaagaagccctccaggtgctagaaaaaagtatttcttcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010029 GO:0010030 GO:0010035 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044464 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0104004 GO:1900140 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

22.83

Weight (kDa)

9.23

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15300 AT4G34220
fragaria_vesca	FvH4_2g05270
malus_domestica	MD05G1088500.v1.1 MD10G1096400.v1.1
prunus_persica	Prupe.8G134500_v2.0.a1
pyrus_communis	pycom05g08790 pycom10g08270
rosa_chinensis	RchiOBHm_Chr6g0255401
rosa_laevigata	RLG00000014841
rosa_multiflora	Rmu_co8383769.1_g000001 Rmu_sc0002360.1_g000015
rosa_roxburghii	Rroxscaffold_7G00210020
rosa_rugosa	Rorug05G0558100.1 Rorug05G0558200
rosa_samantha	Rh6AG075300 Rh6BG068400 Rh6CG068000 Rh6DG064700
rosa_wichuraiana	Rw6G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	2 cut(s)	230, 292
AciI	CCGC	7 cut(s)	182, 253, 290, 292, 430, 443, 577
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	262, 357, 477
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	12, 333, 342, 546, 635
AjiI	CACGTC	2 cut(s)	363, 492
AjnI	CCWGG	2 cut(s)	352, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
AluBI	AGCT	5 cut(s)	44, 147, 393, 426, 549
AluI	AGCT	5 cut(s)	44, 147, 393, 426, 549
Ama87I	CYCGRG	3 cut(s)	32, 191, 219
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	432, 440
AsuC2I	CCSGG	4 cut(s)	33, 34, 322, 472
AvaI	CYCGRG	3 cut(s)	32, 191, 219
AvaII	GGWCC	2 cut(s)	432, 440
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	280, 450
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	2 cut(s)	354, 610
BclI	TGATCA	1 cut(s)	164
BcnI	CCSGG	4 cut(s)	33, 34, 322, 472
BfaI	CTAG	4 cut(s)	388, 550, 566, 616
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	6 cut(s)	33, 34, 322, 354, 472, 610
Bme18I	GGWCC	2 cut(s)	432, 440
BmeT110I	CYCGRG	3 cut(s)	32, 191, 219
BmgBI	CACGTC	2 cut(s)	363, 492
BmgT120I	GGNCC	2 cut(s)	432, 440
BmrFI	CCNGG	6 cut(s)	33, 34, 322, 354, 472, 610
BmsI	GCATC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	592
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu1102I	GCTNAGC	1 cut(s)	40
BpuMI	CCSGG	4 cut(s)	33, 34, 322, 472
BsaJI	CCNNGG	6 cut(s)	32, 33, 218, 290, 320, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 357, 477
Bse118I	RCCGGY	2 cut(s)	262, 445
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	354, 610
BseDI	CCNNGG	6 cut(s)	32, 33, 218, 290, 320, 352
BseGI	GGATG	2 cut(s)	47, 280
BseLI	CCNNNNNNNGG	3 cut(s)	262, 357, 477
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	2 cut(s)	276, 311
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	230, 292
BshFI	GGCC	1 cut(s)	137
BsiHKCI	CYCGRG	3 cut(s)	32, 191, 219
BsiSI	CCGG	5 cut(s)	33, 263, 322, 446, 471
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	262, 357, 477
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	3 cut(s)	32, 191, 219
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	164
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp68I	TCGCGA	1 cut(s)	230
BspACI	CCGC	7 cut(s)	182, 253, 290, 292, 430, 443, 577
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	2 cut(s)	230, 292
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	262, 445
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	2 cut(s)	262, 445
BssECI	CCNNGG	6 cut(s)	32, 33, 218, 290, 320, 352
BssMI	GATC	1 cut(s)	164
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	354, 610
BstC8I	GCNNGC	3 cut(s)	228, 428, 536
BstDEI	CTNAG	2 cut(s)	40, 506
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	47, 280
BstFNI	CGCG	2 cut(s)	230, 292
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 298, 502, 535
BstNI	CCWGG	2 cut(s)	354, 610
BstSCI	CCNGG	6 cut(s)	31, 32, 320, 352, 470, 608
BstUI	CGCG	2 cut(s)	230, 292
BstV1I	GCAGC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	258
BtrI	CACGTC	2 cut(s)	363, 492
BtsCI	GGATG	2 cut(s)	47, 280
BtsIMutI	CAGTG	2 cut(s)	442, 451
BtuMI	TCGCGA	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	228, 428, 536
Cfr10I	RCCGGY	2 cut(s)	262, 445
Cfr13I	GGNCC	2 cut(s)	432, 440
Cfr42I	CCGCGG	1 cut(s)	293
Cfr9I	CCCGGG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	70, 162, 316, 594
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	40, 506
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	432, 440
Eco88I	CYCGRG	3 cut(s)	32, 191, 219
EcoRII	CCWGG	2 cut(s)	352, 608
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	4 cut(s)	73, 165, 319, 597
FaiI	YATR	7 cut(s)	71, 79, 163, 317, 379, 484, 595
FalI	AAGNNNNNCTT	1 cut(s)	615
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	4 cut(s)	69, 161, 315, 593
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	34, 267
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	4 cut(s)	388, 550, 566, 616
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	5 cut(s)	33, 263, 322, 446, 471
Hin1II	CATG	4 cut(s)	73, 165, 319, 597
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	5 cut(s)	33, 263, 322, 446, 471
Hpy166II	GTNNAC	4 cut(s)	366, 440, 451, 489
Hpy188I	TCNGA	2 cut(s)	108, 205
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	4 cut(s)	366, 440, 451, 489
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	3 cut(s)	65, 362, 491
HpyCH4V	TGCA	2 cut(s)	69, 534
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 298, 502, 535
HpyF3I	CTNAG	2 cut(s)	40, 506
HpySE526I	ACGT	3 cut(s)	65, 362, 491
Hsp92II	CATG	4 cut(s)	73, 165, 319, 597
Ksp22I	TGATCA	1 cut(s)	164
KspI	CCGCGG	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	298, 423
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	4 cut(s)	388, 550, 566, 616
MaeII	ACGT	3 cut(s)	65, 362, 491
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	7 cut(s)	24, 69, 88, 345, 477, 535, 623
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	8 cut(s)	187, 228, 289, 294, 297, 501, 507, 616
MseI	TTAA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	5 cut(s)	33, 263, 322, 446, 471
MspR9I	CCNGG	6 cut(s)	33, 34, 322, 354, 472, 610
MvaI	CCWGG	2 cut(s)	354, 610
MvnI	CGCG	2 cut(s)	230, 292
MwoI	GCNNNNNNNGC	4 cut(s)	134, 298, 502, 535
NciI	CCSGG	4 cut(s)	33, 34, 322, 472
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	73, 165, 319, 597
NruI	TCGCGA	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	352, 608
PspGI	CCWGG	2 cut(s)	352, 608
PspPI	GGNCC	2 cut(s)	432, 440
PspXI	VCTCGAGB	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	230
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacII	CCGCGG	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	2 cut(s)	432, 440
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	6 cut(s)	33, 34, 322, 354, 472, 610
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	191
Sfr303I	CCGCGG	1 cut(s)	293
SgrBI	CCGCGG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	432, 440
SlaI	CTCGAG	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	7 cut(s)	182, 253, 290, 292, 430, 443, 577
SspMI	CTAG	4 cut(s)	388, 550, 566, 616
StyD4I	CCNGG	6 cut(s)	31, 32, 320, 352, 470, 608
TaiI	ACGT	3 cut(s)	68, 365, 494
TaqI	TCGA	3 cut(s)	113, 192, 488
TatI	WGTACW	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	442, 458
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	257, 610
TspGWI	ACGGA	1 cut(s)	430
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	2 cut(s)	442, 458
VpaK11BI	GGWCC	2 cut(s)	432, 440
VspI	ATTAAT	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	4 cut(s)	388, 550, 566, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.