Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011220

Physical Location & Seq

Genomic Coordinates Forward (+)

10523209 .. 10527849

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGAGCTCCAAAACCCAAAATCTCTGTTTCTGGTGGAGGCTGATCTCCCTTTTGCTTCTTCTAGTACCCTCGTTGTCTCTAAACTCAGATGGGGTTTTCTTGCTTTCTTTCAAGTACTCCATTCTCAGTGATCCACTTTCAGTCCTGGAAAGCTGGAACTATGAGGATGAAACACCTTGTTCATGGAGTGGAGTCACATGCACCCAACTAGGAAGCCCAGGAACCATTGACATGTTCAGAGTCACAAGCTTGGTCCTCCCAAACAGTCAGCTTCTGGGTTCTATAGCTGAAGAGTTGGGAATGATTGAACACCTCGTCCATCTTGATCTTTCCAACAATTTCTTCAATGGGTCTCTGCCTAAAACCATTCTCAACGCCTCTGAACTTCAGGTGCTTTCTCTCTCAAACAATGTCATCTCCGGTGAGCTTCCTGAGTCCATCGGTGATCTCAAAAGCCTTCAGCTTCTCAACATTTCTGACAATGCTTTGGCCGGAAAAGTCCCTCAAAATCTCACTTCTCTGCAAAACCTCACAGTGGTTTCTTTGAGAAGCAACTACTTCACTGGTAATGTCCCAACCAGGTTTAATTCCGTTGAGGTTTTAGATCTCTCTTCAAATCTACTCAATGGCTCTCTGCCTCTTGATTTTGGTGGAGACAATCTGCGGTACTTAAACATCTCTTACAACAAGATTTGGGGGAAAATACCAGCAGAGTTTGCAAGGAATATTTCAGTGAATTCAACCATTGATCTCTCCTTCAACAACTTAACCGGAGCAATCCCGGATTCGCAAGCTTTGCTCAACCAGAAAACAGAGCAGTTTGCAGGAAATGGTGAGCTTTGTGGCAAACCGTTGAAGAATCTTTGCGCAATTCCTTCGACTCTGTCTACTCCACCGAATGTGACTTCATCTTCTCCGGCTATTGCAGCCATTCCCAAAACACTCGACTCACCTGAATCAAACCCTTCCGGCGCACCAAATAGTACTCAGAACAGAACCCAAACCGGGCTAAAACCGGTCACAATCACCGGAATAATAGTCGGAGACTTAGCCGGAATAGCCATAATTGGACTGGTCATCCTTTACGTCTACCAAGTCAGGAAGAAATCAAAGAACAACCCAACTTCCACTTCATCAGACACAGAGAAGAAACCAGACATTGTCACTAAACTCGACCCAGCTGCAACAAAACCATCCTCATGGTCATGCCTCACCATCAAAGGTGAAGAGACCTCGGAAGCAACGAGCTCAGACAGCGACCACGACGAGAAGCCAAACCATGAAACAGGGGGTGTGCATAGTCAAAACAGCGAAAACTCTCAAAAGCGTGGTGTGCTTATAACCGTGGACGGCGAACCAGAGCTTGAGCTCGAGACGTTGCTGAAGGCCTCGGCGTACGTGTTGGGTGCGAGTGGTCCGAGCATTGTGTACAAGGCGGTGCTGGAAGACAAGACGGCGCTTGCGGTGAGGAGGATTGGAGAGAGTGTGGTGGAGAAGATGAGGGATTTCGAGAACCAAGTGAGGGCCATTGCGAAGATGAAGCACCCAAATTTGGTGAGAGTTCGTGGGTTTTATTGGGGAGAAGATGAGAAGCTTGTGATATATGACTATGTCTCCAATGGCAGCCTCGCCGGAACCATTAACAGAAAAGCAGGTTCATCTCCTTACCATCTGCCTCTAGAAGTTCGGTTGAAGATAGCGAAAGGCATTGCCCGGGGGCTAAGCTACATCCACGAGAAGAAAAACGTGCACGGAAATATAAAACCAAGCAACATTCTTCTAAACTCCGATTTCGACCCTGTAATCAGCGATTTCGGCCTTGACAAGCTAATGTTAGGTGGCATGATCAGTCAAAAAGGTAGCGGTTCTGCCCGAGGGTATTTCGGAAGCCTAAAGTCCTCGGGGGCTCGCGAAGGTATTAATGAAATGCTACCGCCTGTTACCGGCAGCCCCATCGCGACATCCTCCTCCGCGGGAGGAGCATTGTCGCCTTATCATGCCCCGGAGTCCTTGAAGAACTTGAAGCCGAACCCCAGGTGGGACGTGTACTCTTTTGGCATAGTTTTGCTAGAGCTTCTCACGGGTAGGGTATTTACGGAAAGGGAGCTGGCGGACCAGTGGACCGCCGGTTCACTGATGGGGGAGAAGAACCGGGTTTTGGTAATGGTCGACGTGGCGGTTAGGGCTGAGGTGGAGGGCAGGGAAGATGCCTTGCAGGCTTGTTTGAAGCTAGGGTTTAGTTGTGCTAGTTTTGTTCCGCAGAAAAGACCAACCATGAAAGAAGCCCTCCAGGTGCTAGAAAAAAGTATTTCTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010029 GO:0010030 GO:0010035 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044464 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0104004 GO:1900140 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

773

Amino Acids

83.52

Weight (kDa)

6.04

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 68	1.4e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	95 - 184	4.7e-10	Leucine-rich repeat region
LRR_8	PF13855	104 - 163	5e-07	Leucine rich repeat
Pkinase	PF00069	468 - 611	3.6e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	474 - 611	1.3e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	664 - 764	8.5e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15300 AT4G34220
fragaria_vesca	FvH4_2g05270
malus_domestica	MD05G1088500.v1.1 MD10G1096400.v1.1
prunus_persica	Prupe.8G134500_v2.0.a1
pyrus_communis	pycom05g08790 pycom10g08270
rosa_chinensis	RchiOBHm_Chr6g0255401
rosa_laevigata	RLG00000014841
rosa_multiflora	Rmu_co8383769.1_g000001 Rmu_sc0002360.1_g000015
rosa_roxburghii	Rroxscaffold_7G00210020
rosa_rugosa	Rorug05G0558100.1 Rorug05G0558200
rosa_samantha	Rh6AG075300 Rh6BG068400 Rh6CG068000 Rh6DG064700
rosa_wichuraiana	Rw6G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1340
Acc16I	TGCGCA	1 cut(s)	868
Acc36I	ACCTGC	1 cut(s)	1643
AccI	GTMKAC	3 cut(s)	887, 1089, 2169
AccII	CGCG	3 cut(s)	1911, 1958, 1973
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	736, 1549
AcuI	CTGAAG	4 cut(s)	309, 371, 443, 1403
AfaI	GTAC	7 cut(s)	66, 116, 668, 985, 1397, 1430, 2048
AfiI	CCNNNNNNNGG	7 cut(s)	535, 1005, 1522, 1552, 1943, 2038, 2158
AflIII	ACRYGT	3 cut(s)	231, 1398, 2043
AgeI	ACCGGT	1 cut(s)	1015
AjiI	CACGTC	2 cut(s)	2044, 2173
AjnI	CCWGG	5 cut(s)	144, 217, 578, 2033, 2289
AjuI	GAANNNNNNNTTGG	6 cut(s)	326, 358, 1114, 1146, 2141, 2173
AloI	GAACNNNNNNTCC	4 cut(s)	300, 332, 2113, 2145
Alw21I	GWGCWC	4 cut(s)	8, 1250, 1371, 1752
Alw26I	GTCTC	7 cut(s)	81, 357, 648, 1038, 1223, 1367, 1618
Alw44I	GTGCAC	1 cut(s)	1748
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
AoxI	GGCC	4 cut(s)	489, 1386, 1524, 1816
ApaLI	GTGCAC	1 cut(s)	1748
ApeKI	GCWGC	4 cut(s)	926, 1181, 1623, 1947
ApoI	RAATTY	2 cut(s)	736, 1549
AseI	ATTAAT	1 cut(s)	1920
AsiGI	ACCGGT	1 cut(s)	1015
AspLEI	GCGC	3 cut(s)	869, 974, 1459
AspS9I	GGNCC	5 cut(s)	253, 1415, 1524, 2113, 2121
AsuC2I	CCSGG	6 cut(s)	782, 1006, 1714, 1715, 2003, 2153
AsuHPI	GGTGA	9 cut(s)	434, 455, 845, 942, 1018, 1204, 1235, 1477, 1567
AvaI	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
AvaII	GGWCC	4 cut(s)	253, 1415, 2113, 2121
BaeGI	GKGCMC	1 cut(s)	1752
BanII	GRGCYC	4 cut(s)	8, 1250, 1371, 1909
BauI	CACGAG	1 cut(s)	1733
BbsI	GAAGAC	1 cut(s)	1452
Bbv12I	GWGCWC	4 cut(s)	8, 1250, 1371, 1752
BbvCI	CCTCAGC	1 cut(s)	2187
BbvI	GCAGC	4 cut(s)	938, 1168, 1635, 1959
BccI	CCATC	8 cut(s)	83, 327, 446, 1201, 1223, 1677, 1961, 2131
BceAI	ACGGC	2 cut(s)	1366, 1470
BcgI	CGANNNNNNTGC	6 cut(s)	858, 892, 1163, 1197, 1936, 1970
BciT130I	CCWGG	5 cut(s)	146, 219, 580, 2035, 2291
BclI	TGATCA	1 cut(s)	1845
BcnI	CCSGG	6 cut(s)	782, 1006, 1714, 1715, 2003, 2153
BcoDI	GTCTC	7 cut(s)	81, 357, 648, 1038, 1223, 1367, 1618
BfaI	CTAG	7 cut(s)	62, 209, 1679, 2069, 2231, 2247, 2297
BfmI	CTRYAG	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	1460
BfuAI	ACCTGC	1 cut(s)	1643
BglI	GCCNNNNNGGC	1 cut(s)	2216
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	4 cut(s)	927, 1182, 1624, 1948
BlpI	GCTNAGC	1 cut(s)	1721
BlsI	GCNGC	4 cut(s)	928, 1183, 1625, 1949
BmcAI	AGTACT	2 cut(s)	116, 985
Bme18I	GGWCC	4 cut(s)	253, 1415, 2113, 2121
BmeT110I	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
BmgBI	CACGTC	2 cut(s)	2044, 2173
BmgT120I	GGNCC	5 cut(s)	253, 1415, 1524, 2113, 2121
BmiI	GGNNCC	2 cut(s)	223, 1636
BmsI	GCATC	1 cut(s)	2197
BpiI	GAAGAC	1 cut(s)	1452
BpmI	CTGGAG	1 cut(s)	2273
Bpu10I	CCTNAGC	1 cut(s)	2187
Bpu1102I	GCTNAGC	1 cut(s)	1721
BpuEI	CTTGAG	1 cut(s)	1385
BpuMI	CCSGG	6 cut(s)	782, 1006, 1714, 1715, 2003, 2153
BsaAI	YACGTR	1 cut(s)	1399
BsaI	GGTCTC	2 cut(s)	357, 1223
BsaWI	WCCGGW	4 cut(s)	419, 770, 1015, 1028
BsaXI	ACNNNNNCTCC	4 cut(s)	1470, 1500, 1598, 1628
Bsc4I	CCNNNNNNNGG	7 cut(s)	535, 1005, 1522, 1552, 1943, 2038, 2158
Bse118I	RCCGGY	3 cut(s)	1015, 1943, 2126
Bse1I	ACTGG	3 cut(s)	568, 1077, 2116
Bse3DI	GCAATG	2 cut(s)	1527, 1707
BseBI	CCWGG	5 cut(s)	146, 219, 580, 2035, 2291
BseGI	GGATG	5 cut(s)	172, 1077, 1193, 1728, 1961
BseLI	CCNNNNNNNGG	7 cut(s)	535, 1005, 1522, 1552, 1943, 2038, 2158
BseMI	GCAATG	2 cut(s)	1527, 1707
BseMII	CTCAG	6 cut(s)	99, 139, 423, 1001, 1263, 2178
BseNI	ACTGG	3 cut(s)	568, 1077, 2116
BseRI	GAGGAG	3 cut(s)	1483, 1957, 1992
BseSI	GKGCMC	1 cut(s)	1752
BseXI	GCAGC	4 cut(s)	938, 1168, 1635, 1959
BseYI	CCCAGC	1 cut(s)	1177
Bsh1236I	CGCG	3 cut(s)	1911, 1958, 1973
BshFI	GGCC	4 cut(s)	491, 1388, 1526, 1818
BshTI	ACCGGT	1 cut(s)	1015
BsiHKAI	GWGCWC	4 cut(s)	8, 1250, 1371, 1752
BsiHKCI	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
BsiWI	CGTACG	1 cut(s)	1395
BslFI	GGGAC	3 cut(s)	485, 557, 2054
BslI	CCNNNNNNNGG	7 cut(s)	535, 1005, 1522, 1552, 1943, 2038, 2158
BsmAI	GTCTC	7 cut(s)	81, 357, 648, 1038, 1223, 1367, 1618
BsmBI	CGTCTC	1 cut(s)	1367
BsmFI	GGGAC	3 cut(s)	485, 557, 2054
BsnI	GGCC	4 cut(s)	491, 1388, 1526, 1818
Bso31I	GGTCTC	2 cut(s)	357, 1223
BsoBI	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
Bsp1286I	GDGCHC	5 cut(s)	8, 1250, 1371, 1752, 1909
Bsp1407I	TGTACA	1 cut(s)	1428
Bsp143I	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
Bsp1720I	GCTNAGC	1 cut(s)	1721
Bsp68I	TCGCGA	2 cut(s)	1911, 1958
BspANI	GGCC	4 cut(s)	491, 1388, 1526, 1818
BspCNI	CTCAG	6 cut(s)	98, 138, 424, 1000, 1262, 2179
BspFNI	CGCG	3 cut(s)	1911, 1958, 1973
BspLI	GGNNCC	2 cut(s)	223, 1636
BspMI	ACCTGC	1 cut(s)	1643
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	2 cut(s)	357, 1223
BsrDI	GCAATG	2 cut(s)	1527, 1707
BsrFI	RCCGGY	3 cut(s)	1015, 1943, 2126
BsrGI	TGTACA	1 cut(s)	1428
BsrI	ACTGG	7 cut(s)	154, 568, 712, 1077, 1089, 1306, 2116
BssAI	RCCGGY	3 cut(s)	1015, 1943, 2126
BssMI	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
BssSI	CACGAG	1 cut(s)	1733
Bst2BI	CACGAG	1 cut(s)	1733
Bst2UI	CCWGG	5 cut(s)	146, 219, 580, 2035, 2291
Bst4CI	ACNGT	4 cut(s)	266, 535, 852, 1345
Bst6I	CTCTTC	3 cut(s)	285, 616, 1221
BstAPI	GCANNNNNTGC	2 cut(s)	716, 796
BstAUI	TGTACA	1 cut(s)	1428
BstBAI	YACGTR	1 cut(s)	1399
BstC8I	GCNNGC	5 cut(s)	792, 1461, 1909, 2109, 2217
BstDEI	CTNAG	8 cut(s)	85, 125, 432, 987, 1048, 1249, 1721, 2187
BstDSI	CCRYGG	2 cut(s)	1344, 1971
BstF5I	GGATG	5 cut(s)	172, 1077, 1193, 1728, 1961
BstFNI	CGCG	3 cut(s)	1911, 1958, 1973
BstH2I	RGCGCY	1 cut(s)	1460
BstHHI	GCGC	3 cut(s)	869, 974, 1459
BstKTI	GATC	7 cut(s)	45, 133, 328, 448, 607, 751, 1848
BstMAI	GTCTC	7 cut(s)	81, 357, 648, 1038, 1223, 1367, 1618
BstMBI	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
BstNI	CCWGG	5 cut(s)	146, 219, 580, 2035, 2291
BstNSI	RCATGY	2 cut(s)	201, 235
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	1752
BstUI	CGCG	3 cut(s)	1911, 1958, 1973
BstV1I	GCAGC	4 cut(s)	938, 1168, 1635, 1959
BstV2I	GAAGAC	1 cut(s)	1452
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	1200
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	4 cut(s)	491, 1388, 1526, 1818
BtgI	CCRYGG	2 cut(s)	1344, 1971
BtgZI	GCGATG	1 cut(s)	1939
BtrI	CACGTC	2 cut(s)	2044, 2173
BtsCI	GGATG	5 cut(s)	172, 1077, 1193, 1728, 1961
BtsIMutI	CAGTG	6 cut(s)	133, 540, 561, 738, 2123, 2132
BtuMI	TCGCGA	2 cut(s)	1911, 1958
BveI	ACCTGC	1 cut(s)	1643
Cac8I	GCNNGC	5 cut(s)	792, 1461, 1909, 2109, 2217
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	3 cut(s)	869, 974, 1459
Cfr10I	RCCGGY	3 cut(s)	1015, 1943, 2126
Cfr13I	GGNCC	5 cut(s)	253, 1415, 1524, 2113, 2121
Cfr42I	CCGCGG	1 cut(s)	1974
Cfr9I	CCCGGG	1 cut(s)	1713
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	7 cut(s)	65, 115, 667, 984, 1396, 1429, 2047
CspAI	ACCGGT	1 cut(s)	1015
CviAII	CATG	9 cut(s)	183, 198, 232, 1200, 1206, 1280, 1843, 1997, 2275
CviQI	GTAC	7 cut(s)	65, 115, 667, 984, 1396, 1429, 2047
DdeI	CTNAG	8 cut(s)	85, 125, 432, 987, 1048, 1249, 1721, 2187
DpnI	GATC	7 cut(s)	44, 132, 327, 447, 606, 750, 1847
DpnII	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	3 cut(s)	285, 616, 1221
EarI	CTCTTC	3 cut(s)	285, 616, 1221
EciI	GGCGGA	1 cut(s)	2126
Ecl136II	GAGCTC	3 cut(s)	6, 1248, 1369
Eco147I	AGGCCT	1 cut(s)	1388
Eco24I	GRGCYC	4 cut(s)	8, 1250, 1371, 1909
Eco31I	GGTCTC	2 cut(s)	357, 1223
Eco47I	GGWCC	4 cut(s)	253, 1415, 2113, 2121
Eco53kI	GAGCTC	3 cut(s)	6, 1248, 1369
Eco57I	CTGAAG	4 cut(s)	309, 371, 443, 1403
Eco88I	CYCGRG	4 cut(s)	1370, 1713, 1872, 1900
EcoICRI	GAGCTC	3 cut(s)	6, 1248, 1369
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	5 cut(s)	144, 217, 578, 2033, 2289
EcoT38I	GRGCYC	4 cut(s)	8, 1250, 1371, 1909
Esp3I	CGTCTC	1 cut(s)	1367
FaeI	CATG	9 cut(s)	186, 201, 235, 1203, 1209, 1283, 1846, 2000, 2278
FalI	AAGNNNNNCTT	1 cut(s)	2296
FaqI	GGGAC	3 cut(s)	485, 557, 2054
FatI	CATG	9 cut(s)	182, 197, 231, 1199, 1205, 1279, 1842, 1996, 2274
FauI	CCCGC	1 cut(s)	1966
FbaI	TGATCA	1 cut(s)	1845
FblI	GTMKAC	3 cut(s)	887, 1089, 2169
Fnu4HI	GCNGC	4 cut(s)	927, 1182, 1624, 1948
FokI	GGATG	5 cut(s)	179, 1064, 1180, 1715, 1948
FriOI	GRGCYC	4 cut(s)	8, 1250, 1371, 1909
Fsp4HI	GCNGC	4 cut(s)	927, 1182, 1624, 1948
FspBI	CTAG	7 cut(s)	62, 209, 1679, 2069, 2231, 2247, 2297
FspI	TGCGCA	1 cut(s)	868
GlaI	GCGC	3 cut(s)	868, 973, 1458
GluI	GCNGC	4 cut(s)	927, 1182, 1624, 1948
GsaI	CCCAGC	1 cut(s)	1181
GsuI	CTGGAG	1 cut(s)	2273
HaeII	RGCGCY	1 cut(s)	1460
HaeIII	GGCC	4 cut(s)	491, 1388, 1526, 1818
HhaI	GCGC	3 cut(s)	869, 974, 1459
Hin1II	CATG	9 cut(s)	186, 201, 235, 1203, 1209, 1283, 1846, 2000, 2278
Hin6I	GCGC	3 cut(s)	867, 972, 1457
HinP1I	GCGC	3 cut(s)	867, 972, 1457
HincII	GTYRAC	1 cut(s)	2170
HindII	GTYRAC	1 cut(s)	2170
HindIII	AAGCTT	3 cut(s)	247, 792, 1592
HinfI	GANTC	9 cut(s)	192, 240, 434, 785, 859, 880, 947, 956, 2006
HphI	GGTGA	9 cut(s)	434, 455, 845, 942, 1018, 1204, 1235, 1477, 1567
Hpy166II	GTNNAC	9 cut(s)	888, 1090, 1348, 1429, 1750, 2047, 2121, 2132, 2170
Hpy188III	TCNNGA	9 cut(s)	323, 431, 641, 1099, 1372, 1510, 1679, 1910, 1957
Hpy8I	GTNNAC	9 cut(s)	888, 1090, 1348, 1429, 1750, 2047, 2121, 2132, 2170
Hpy99I	CGWCG	2 cut(s)	1268, 2174
HpyAV	CCTTC	6 cut(s)	467, 766, 885, 975, 1378, 1907
HpyCH4III	ACNGT	4 cut(s)	266, 535, 852, 1345
HpyCH4IV	ACGT	6 cut(s)	1086, 1376, 1398, 1746, 2043, 2172
HpyCH4V	TGCA	9 cut(s)	201, 523, 719, 824, 926, 1184, 1297, 1750, 2215
HpyF3I	CTNAG	8 cut(s)	85, 125, 432, 987, 1048, 1249, 1721, 2187
HpySE526I	ACGT	6 cut(s)	1086, 1376, 1398, 1746, 2043, 2172
Hsp92II	CATG	9 cut(s)	186, 201, 235, 1203, 1209, 1283, 1846, 2000, 2278
HspAI	GCGC	3 cut(s)	867, 972, 1457
Ksp22I	TGATCA	1 cut(s)	1845
KspI	CCGCGG	1 cut(s)	1974
Kzo9I	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
LmnI	GCTCC	4 cut(s)	11, 773, 1979, 2104
Lsp1109I	GCAGC	4 cut(s)	938, 1168, 1635, 1959
LweI	GCATC	1 cut(s)	2197
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	7 cut(s)	62, 209, 1679, 2069, 2231, 2247, 2297
MaeII	ACGT	6 cut(s)	1086, 1376, 1398, 1746, 2043, 2172
MaeIII	GTNAC	6 cut(s)	193, 241, 901, 1018, 1162, 1939
MalI	GATC	7 cut(s)	44, 132, 327, 447, 606, 750, 1847
MboI	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	5 cut(s)	8, 1250, 1371, 1752, 1909
MluCI	AATT	6 cut(s)	337, 586, 736, 870, 1065, 1549
MlyI	GAGTC	6 cut(s)	201, 249, 443, 874, 941, 2015
MmeI	TCCRAC	2 cut(s)	357, 1021
MseI	TTAA	5 cut(s)	585, 671, 767, 1641, 1920
MslI	CAYNNNNRTG	3 cut(s)	230, 1198, 1204
MspA1I	CMGCKG	2 cut(s)	1181, 1973
MvaI	CCWGG	5 cut(s)	146, 219, 580, 2035, 2291
MvnI	CGCG	3 cut(s)	1911, 1958, 1973
NciI	CCSGG	6 cut(s)	782, 1006, 1714, 1715, 2003, 2153
NdeII	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
NlaIII	CATG	9 cut(s)	186, 201, 235, 1203, 1209, 1283, 1846, 2000, 2278
NlaIV	GGNNCC	2 cut(s)	223, 1636
NmeAIII	GCCGAG	1 cut(s)	1370
NmuCI	GTSAC	5 cut(s)	193, 241, 901, 1018, 1162
NruI	TCGCGA	2 cut(s)	1911, 1958
NsbI	TGCGCA	1 cut(s)	868
NspI	RCATGY	2 cut(s)	201, 235
PaeR7I	CTCGAG	1 cut(s)	1370
PceI	AGGCCT	1 cut(s)	1388
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	1241
PfeI	GAWTC	3 cut(s)	785, 859, 956
Pfl23II	CGTACG	1 cut(s)	1395
PflFI	GACNNNGTC	3 cut(s)	883, 1160, 1610
PfoI	TCCNGGA	2 cut(s)	144, 780
PinAI	ACCGGT	1 cut(s)	1015
PkrI	GCNGC	4 cut(s)	928, 1183, 1625, 1949
PleI	GAGTC	6 cut(s)	200, 248, 442, 874, 941, 2014
PpsI	GAGTC	6 cut(s)	200, 248, 442, 874, 941, 2014
Ppu21I	YACGTR	1 cut(s)	1399
PscI	ACATGT	1 cut(s)	231
PshBI	ATTAAT	1 cut(s)	1920
PsiI	TTATAA	1 cut(s)	1340
Psp124BI	GAGCTC	3 cut(s)	8, 1250, 1371
Psp6I	CCWGG	5 cut(s)	144, 217, 578, 2033, 2289
PspFI	CCCAGC	1 cut(s)	1177
PspGI	CCWGG	5 cut(s)	144, 217, 578, 2033, 2289
PspLI	CGTACG	1 cut(s)	1395
PspN4I	GGNNCC	2 cut(s)	223, 1636
PspPI	GGNCC	5 cut(s)	253, 1415, 1524, 2113, 2121
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	604
PsyI	GACNNNGTC	3 cut(s)	883, 1160, 1610
PvuII	CAGCTG	1 cut(s)	1181
RruI	TCGCGA	2 cut(s)	1911, 1958
RsaI	GTAC	7 cut(s)	66, 116, 668, 985, 1397, 1430, 2048
RsaNI	GTAC	7 cut(s)	65, 115, 667, 984, 1396, 1429, 2047
RseI	CAYNNNNRTG	3 cut(s)	230, 1198, 1204
SacI	GAGCTC	3 cut(s)	8, 1250, 1371
SacII	CCGCGG	1 cut(s)	1974
SalI	GTCGAC	1 cut(s)	2168
SaqAI	TTAA	5 cut(s)	585, 671, 767, 1641, 1920
SatI	GCNGC	4 cut(s)	927, 1182, 1624, 1948
Sau3AI	GATC	7 cut(s)	42, 130, 325, 445, 604, 748, 1845
Sau96I	GGNCC	5 cut(s)	253, 1415, 1524, 2113, 2121
ScaI	AGTACT	2 cut(s)	116, 985
SchI	GAGTC	6 cut(s)	201, 249, 443, 874, 941, 2015
SduI	GDGCHC	5 cut(s)	8, 1250, 1371, 1752, 1909
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	2197
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	1370
Sfr303I	CCGCGG	1 cut(s)	1974
SgrBI	CCGCGG	1 cut(s)	1974
SinI	GGWCC	4 cut(s)	253, 1415, 2113, 2121
SlaI	CTCGAG	1 cut(s)	1370
SmaI	CCCGGG	1 cut(s)	1715
SmiMI	CAYNNNNRTG	3 cut(s)	230, 1198, 1204
SmlI	CTYRAG	2 cut(s)	1364, 1370
SmoI	CTYRAG	2 cut(s)	1364, 1370
Sse9I	AATT	6 cut(s)	337, 586, 736, 870, 1065, 1549
SseBI	AGGCCT	1 cut(s)	1388
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	7 cut(s)	62, 209, 1679, 2069, 2231, 2247, 2297
SstI	GAGCTC	3 cut(s)	8, 1250, 1371
StuI	AGGCCT	1 cut(s)	1388
TaaI	ACNGT	4 cut(s)	266, 535, 852, 1345
TaiI	ACGT	6 cut(s)	1089, 1379, 1401, 1749, 2046, 2175
TaqI	TCGA	7 cut(s)	878, 945, 1173, 1371, 1509, 1794, 2169
TasI	AATT	6 cut(s)	337, 586, 736, 870, 1065, 1549
TatI	WGTACW	4 cut(s)	114, 983, 1428, 2046
TfiI	GAWTC	3 cut(s)	785, 859, 956
Tru1I	TTAA	5 cut(s)	585, 671, 767, 1641, 1920
Tru9I	TTAA	5 cut(s)	585, 671, 767, 1641, 1920
TscAI	CASTG	6 cut(s)	133, 540, 568, 738, 2123, 2139
TseFI	GTSAC	5 cut(s)	193, 241, 901, 1018, 1162
TseI	GCWGC	4 cut(s)	926, 1181, 1623, 1947
Tsp45I	GTSAC	5 cut(s)	193, 241, 901, 1018, 1162
TspDTI	ATGAA	9 cut(s)	171, 183, 897, 1122, 1296, 1553, 1647, 1938, 2291
TspGWI	ACGGA	3 cut(s)	580, 1767, 2111
TspMI	CCCGGG	1 cut(s)	1713
TspRI	CASTG	6 cut(s)	133, 540, 568, 738, 2123, 2139
Tth111I	GACNNNGTC	3 cut(s)	883, 1160, 1610
VneI	GTGCAC	1 cut(s)	1748
VpaK11BI	GGWCC	4 cut(s)	253, 1415, 2113, 2121
VspI	ATTAAT	1 cut(s)	1920
XapI	RAATTY	2 cut(s)	736, 1549
XbaI	TCTAGA	1 cut(s)	1678
XceI	RCATGY	2 cut(s)	201, 235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1069
XhoI	CTCGAG	1 cut(s)	1370
XmaI	CCCGGG	1 cut(s)	1713
XmiI	GTMKAC	3 cut(s)	887, 1089, 2169
XspI	CTAG	7 cut(s)	62, 209, 1679, 2069, 2231, 2247, 2297
ZrmI	AGTACT	2 cut(s)	116, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.