Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385283.1

Orthogroup ID

OG0010764

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1141

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 823 bp

atgaccactccagcggacccatcgccgacgccgtcgccgtcatcgacggcatcggcgccggcgctggtgctgtcgaactccgggaagaggatggaccaggcggggaagaagaagtatgtgaagcaggtgaccgggcggcacaacgacaccgagctccacctggcggcgcagaagggcgatctggccgccgtgaagcagattctgcgtgatattgtttcgcaggtggaggggacggtgagtggggctgagttggattcggaggtggcggaggtgagggcggcggtggtgaatgatgtgaatgagctgggggagacggcgttgttcacggcggcggatagagggcatctggatgtggtgaaggagttgttgaagtattcgaataaggagagttttgtgaagaagaatcggtccgggtttagtcccttgcatattgctgcaactcatggccaccatgccattgttcaggtactcctggatcaagaccccgggctaagcaggacaactggcccgtcgaatgctaccccacttatatctgcagctcaaagagggcatatagctgtggttgatgaactgttgtcaaaggattctaccttgttggagatttcaaaatcaaatgggaagaatgcattgcatctggctgcaagaccagggcatgtggagattgtaagagcattgctaaatagggatccacaattggcacgaaggactgacaagaaagggcaaactgccttgcatatggctgttaaagggacaagctgtgaggtggtgaaattgcttcttgatgcagatgctgcaattgtgatgcttcctgacaaatttggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0023052 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0065007 GO:0070727 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 PGG

Protein Analysis

274

Amino Acids

29.11

Weight (kDa)

8.57

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12360 AT3G12360
fragaria_vesca	FvH4_7g20900
malus_domestica	MD01G1118500.v1.1 MD07G1186700.v1.1
prunus_persica	Prupe.2G225600_v2.0.a1
pyrus_communis	pycom01g14570
rosa_chinensis	RchiOBHm_Chr1g0365211
rosa_laevigata	RLG00000027438
rosa_multiflora	Rmu_co8385283.1_g000001 Rmu_sc0008035.1_g000005 Rmu_sc0024070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291370 Rroxscaffold_4G00291910
rosa_rugosa	Rorug01G0320300
rosa_samantha	Rh1AG329300 Rh1BG290700 Rh1CG307600 Rh1DG322400
rosa_wichuraiana	Rw1G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	115, 211
Acc36I	ACCTGC	2 cut(s)	115, 211
AccB1I	GGYRCC	1 cut(s)	55
AclWI	GGATC	3 cut(s)	483, 680, 693
AcoI	YGGCCR	2 cut(s)	183, 445
AcsI	RAATTY	1 cut(s)	815
AcyI	GRCGYC	2 cut(s)	29, 56
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	87, 163
AgsI	TTSAA	2 cut(s)	370, 606
AjnI	CCWGG	4 cut(s)	96, 159, 471, 646
AluBI	AGCT	5 cut(s)	154, 304, 539, 557, 756
AluI	AGCT	5 cut(s)	154, 304, 539, 557, 756
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	3 cut(s)	483, 680, 693
AlwNI	CAGNNNCTG	2 cut(s)	202, 791
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	183, 445, 505
ApeKI	GCWGC	4 cut(s)	434, 536, 638, 791
ApoI	RAATTY	1 cut(s)	815
AspLEI	GCGC	3 cut(s)	58, 64, 169
AspS9I	GGNCC	4 cut(s)	16, 94, 408, 506
AsuC2I	CCSGG	5 cut(s)	82, 133, 412, 486, 487
AsuHPI	GGTGA	6 cut(s)	139, 247, 283, 298, 367, 778
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	3 cut(s)	16, 94, 408
BalI	TGGCCA	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	421, 548, 625, 778
BccI	CCATC	2 cut(s)	28, 85
BceAI	ACGGC	6 cut(s)	16, 22, 63, 173, 330, 342
BciT130I	CCWGG	4 cut(s)	98, 161, 473, 648
BcnI	CCSGG	5 cut(s)	82, 133, 412, 486, 487
BcoDI	GTCTC	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	2 cut(s)	59, 65
BfuAI	ACCTGC	2 cut(s)	115, 211
BisI	GCNGC	9 cut(s)	137, 165, 186, 279, 330, 435, 537, 639, 792
BlpI	GCTNAGC	1 cut(s)	491
BlsI	GCNGC	9 cut(s)	138, 166, 187, 280, 331, 436, 538, 640, 793
Bme1390I	CCNGG	9 cut(s)	82, 98, 133, 161, 412, 473, 486, 487, 648
Bme18I	GGWCC	3 cut(s)	16, 94, 408
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	4 cut(s)	16, 94, 408, 506
BmiI	GGNNCC	3 cut(s)	18, 57, 687
BmrFI	CCNGG	9 cut(s)	82, 98, 133, 161, 412, 473, 486, 487, 648
BmsI	GCATC	6 cut(s)	59, 352, 640, 772, 778, 792
Bpu1102I	GCTNAGC	1 cut(s)	491
Bpu14I	TTCGAA	1 cut(s)	377
BpuMI	CCSGG	5 cut(s)	82, 133, 412, 486, 487
BsaHI	GRCGYC	2 cut(s)	29, 56
BsaJI	CCNNGG	3 cut(s)	484, 485, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 163
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	2 cut(s)	626, 671
BseBI	CCWGG	4 cut(s)	98, 161, 473, 648
BseDI	CCNNGG	3 cut(s)	484, 485, 647
BseGI	GGATG	2 cut(s)	96, 355
BseLI	CCNNNNNNNGG	2 cut(s)	87, 163
BseMI	GCAATG	2 cut(s)	626, 671
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	4 cut(s)	421, 548, 625, 778
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	3 cut(s)	185, 447, 507
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	5 cut(s)	59, 81, 132, 411, 486
BslFI	GGGAC	3 cut(s)	244, 405, 763
BslI	CCNNNNNNNGG	2 cut(s)	87, 163
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	3 cut(s)	244, 405, 763
BsmI	GAATGC	2 cut(s)	520, 628
BsnI	GGCC	3 cut(s)	185, 447, 507
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	178, 475, 685
Bsp1720I	GCTNAGC	1 cut(s)	491
BspANI	GGCC	3 cut(s)	185, 447, 507
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	18, 57, 687
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	2 cut(s)	115, 211
BspPI	GGATC	3 cut(s)	483, 680, 693
BspT104I	TTCGAA	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	626, 671
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	484, 485, 647
BssMI	GATC	3 cut(s)	178, 475, 685
BssNI	GRCGYC	2 cut(s)	29, 56
Bst2UI	CCWGG	4 cut(s)	98, 161, 473, 648
Bst4CI	ACNGT	2 cut(s)	235, 573
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	2 cut(s)	29, 56
BstAPI	GCANNNNNTGC	2 cut(s)	202, 791
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	246, 491
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	96, 355
BstH2I	RGCGCY	2 cut(s)	59, 65
BstHHI	GCGC	3 cut(s)	58, 64, 169
BstKTI	GATC	3 cut(s)	181, 478, 688
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	3 cut(s)	178, 475, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 791
BstNI	CCWGG	4 cut(s)	98, 161, 473, 648
BstNSI	RCATGY	1 cut(s)	656
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	9 cut(s)	80, 96, 131, 159, 410, 471, 484, 485, 646
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	421, 548, 625, 778
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	3 cut(s)	185, 447, 507
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	96, 355
BveI	ACCTGC	2 cut(s)	115, 211
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	2 cut(s)	202, 791
CfoI	GCGC	3 cut(s)	58, 64, 169
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	16, 94, 408, 506
Cfr9I	CCCGGG	1 cut(s)	485
CpoI	CGGWCCG	1 cut(s)	408
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	467
CspI	CGGWCCG	1 cut(s)	408
CviAII	CATG	3 cut(s)	443, 452, 653
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	2 cut(s)	246, 491
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	3 cut(s)	180, 477, 687
DpnII	GATC	3 cut(s)	178, 475, 685
EaeI	YGGCCR	2 cut(s)	183, 445
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	2 cut(s)	281, 347
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	3 cut(s)	16, 94, 408
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	485
Eco91I	GGTNACC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	4 cut(s)	96, 159, 471, 646
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	3 cut(s)	446, 455, 656
FaqI	GGGAC	3 cut(s)	244, 405, 763
FatI	CATG	3 cut(s)	442, 451, 652
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	1 cut(s)	735
Fnu4HI	GCNGC	9 cut(s)	137, 165, 186, 279, 330, 435, 537, 639, 792
FokI	GGATG	2 cut(s)	103, 362
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	9 cut(s)	137, 165, 186, 279, 330, 435, 537, 639, 792
GlaI	GCGC	3 cut(s)	57, 63, 168
GluI	GCNGC	9 cut(s)	137, 165, 186, 279, 330, 435, 537, 639, 792
GsaI	CCCAGC	1 cut(s)	308
HaeII	RGCGCY	2 cut(s)	59, 65
HaeIII	GGCC	3 cut(s)	185, 447, 507
HapII	CCGG	5 cut(s)	59, 81, 132, 411, 486
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	3 cut(s)	58, 64, 169
Hin1I	GRCGYC	2 cut(s)	29, 56
Hin1II	CATG	3 cut(s)	446, 455, 656
Hin6I	GCGC	3 cut(s)	56, 62, 167
HinP1I	GCGC	3 cut(s)	56, 62, 167
HinfI	GANTC	4 cut(s)	199, 254, 403, 584
HpaII	CCGG	5 cut(s)	59, 81, 132, 411, 486
HphI	GGTGA	6 cut(s)	139, 247, 283, 298, 367, 778
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	4 cut(s)	347, 479, 779, 809
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	4 cut(s)	31, 37, 49, 514
HpyAV	CCTTC	3 cut(s)	166, 352, 696
HpyCH4III	ACNGT	2 cut(s)	235, 573
HpyCH4V	TGCA	9 cut(s)	427, 437, 536, 626, 631, 641, 733, 785, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 791
HpyF3I	CTNAG	2 cut(s)	246, 491
Hsp92I	GRCGYC	2 cut(s)	29, 56
Hsp92II	CATG	3 cut(s)	446, 455, 656
HspAI	GCGC	3 cut(s)	56, 62, 167
KasI	GGCGCC	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	178, 475, 685
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	4 cut(s)	421, 548, 625, 778
LweI	GCATC	6 cut(s)	59, 352, 640, 772, 778, 792
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	180, 477, 687
MboI	GATC	3 cut(s)	178, 475, 685
MboII	GAAGA	6 cut(s)	97, 118, 121, 409, 412, 631
MfeI	CAATTG	2 cut(s)	692, 795
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	4 cut(s)	692, 770, 795, 815
MluNI	TGGCCA	1 cut(s)	447
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	231, 576
MnlI	CCTC	8 cut(s)	81, 220, 253, 262, 267, 332, 539, 754
Mox20I	TGGCCA	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	628
MreI	CGCCGGCG	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	5 cut(s)	59, 81, 132, 411, 486
MspR9I	CCNGG	9 cut(s)	82, 98, 133, 161, 412, 473, 486, 487, 648
MunI	CAATTG	2 cut(s)	692, 795
Mva1269I	GAATGC	2 cut(s)	520, 628
MvaI	CCWGG	4 cut(s)	98, 161, 473, 648
MwoI	GCNNNNNNNGC	2 cut(s)	202, 791
NaeI	GCCGGC	1 cut(s)	60
NarI	GGCGCC	1 cut(s)	56
NciI	CCSGG	5 cut(s)	82, 133, 412, 486, 487
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	3 cut(s)	178, 475, 685
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	446, 455, 656
NlaIV	GGNNCC	3 cut(s)	18, 57, 687
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	628
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	377
PaqCI	CACCTGC	2 cut(s)	115, 211
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 35, 41
PctI	GAATGC	2 cut(s)	520, 628
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	199, 254, 403, 584
PflFI	GACNNNGTC	1 cut(s)	31
PfoI	TCCNGGA	2 cut(s)	80, 471
PkrI	GCNGC	9 cut(s)	138, 166, 187, 280, 331, 436, 538, 640, 793
PluTI	GGCGCC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	4 cut(s)	96, 159, 471, 646
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	4 cut(s)	96, 159, 471, 646
PspN4I	GGNNCC	3 cut(s)	18, 57, 687
PspPI	GGNCC	4 cut(s)	16, 94, 408, 506
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	2 cut(s)	202, 791
PsuI	RGATCY	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	408
RsrII	CGGWCCG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	9 cut(s)	137, 165, 186, 279, 330, 435, 537, 639, 792
Sau3AI	GATC	3 cut(s)	178, 475, 685
Sau96I	GGNCC	4 cut(s)	16, 94, 408, 506
ScrFI	CCNGG	9 cut(s)	82, 98, 133, 161, 412, 473, 486, 487, 648
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	6 cut(s)	59, 352, 640, 772, 778, 792
SfcI	CTRYAG	1 cut(s)	534
SfoI	GGCGCC	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	3 cut(s)	16, 94, 408
SmaI	CCCGGG	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	692, 770, 795, 815
SspDI	GGCGCC	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	9 cut(s)	80, 96, 131, 159, 410, 471, 484, 485, 646
TaaI	ACNGT	2 cut(s)	235, 573
TaqI	TCGA	4 cut(s)	44, 74, 377, 512
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	692, 770, 795, 815
TauI	GCSGC	5 cut(s)	139, 167, 188, 281, 332
TfiI	GAWTC	4 cut(s)	199, 254, 403, 584
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	434, 536, 638, 791
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	582
TspMI	CCCGGG	1 cut(s)	485
Tth111I	GACNNNGTC	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	16, 94, 408
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	1 cut(s)	656
XmaI	CCCGGG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.