Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010764

Physical Location & Seq

Genomic Coordinates Reverse (-)

43943807 .. 43944286

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCCGTCTTTGGTGTTTCTTCGTTTGTCGAAAAAGAAAACTAAAAGATGGAGCAATATGTTGTCATTACTTCGTTTGAGAAGTGCCATAGCATATGCTGGTAGGAGATATTTGAGGGTGAATCTTTTGCCAGTGTCATACAGTGCTCTTTCAGATGCTACTGATGGGTTTTCTTCAAGAAATTTGATTGGTGTTGGTAGTTTTGGGTCCATTTACAAAGTAGCTCTTGTTACCCCATTTGATGGAACTTACCTTTTTTTGGCCAAGTATGATAGAGTTCATCTAGTTGCTGTGAAGGTGTTTAACCTGTCACGCCATGGAGCATCTAGGAGTTTCATAACCGAACGTGACATGTTCAGAAATATCAGGCATCGAATTGTGGTCAAGATTGTAACTGCATGCTCTCATGTCGATTTTTATGAGAATGAATTCAAGGCTCTGGTGTATCAGTACATGGAGAAGGGGAGCTTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0023052 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0065007 GO:0070727 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 PGG

Protein Analysis

159

Amino Acids

18.26

Weight (kDa)

10.13

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	62 - 159	6.9e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12360 AT3G12360
fragaria_vesca	FvH4_7g20900
malus_domestica	MD01G1118500.v1.1 MD07G1186700.v1.1
prunus_persica	Prupe.2G225600_v2.0.a1
pyrus_communis	pycom01g14570
rosa_chinensis	RchiOBHm_Chr1g0365211
rosa_laevigata	RLG00000027438
rosa_multiflora	Rmu_co8385283.1_g000001 Rmu_sc0008035.1_g000005 Rmu_sc0024070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00291370 Rroxscaffold_4G00291910
rosa_rugosa	Rorug01G0320300
rosa_samantha	Rh1AG329300 Rh1BG290700 Rh1CG307600 Rh1DG322400
rosa_wichuraiana	Rw1G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	184, 431
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	245, 262
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	180, 436
AluBI	AGCT	2 cut(s)	227, 471
AluI	AGCT	2 cut(s)	227, 471
Alw21I	GWGCWC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	184, 431
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	3 cut(s)	45, 161, 239
BfaI	CTAG	2 cut(s)	287, 330
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	6, 211
BmsI	GCATC	3 cut(s)	148, 335, 382
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 262
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	245, 262
BseNI	ACTGG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	245, 262
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	319
BspANI	GGCC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	6, 211
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	472
BstDSI	CCRYGG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstNSI	RCATGY	2 cut(s)	358, 405
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	141, 151
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	320, 355, 402, 410, 457
CviJI	RGCY	4 cut(s)	227, 266, 440, 471
CviKI_1	RGCY	4 cut(s)	227, 266, 440, 471
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	5 cut(s)	323, 358, 405, 413, 460
FalI	AAGNNNNNCTT	3 cut(s)	213, 245, 455
FatI	CATG	5 cut(s)	319, 354, 401, 409, 456
FauNDI	CATATG	1 cut(s)	97
FspBI	CTAG	2 cut(s)	287, 330
HaeIII	GGCC	1 cut(s)	266
Hin1II	CATG	5 cut(s)	323, 358, 405, 413, 460
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	157, 362
Hpy188III	TCNNGA	2 cut(s)	180, 388
HpyAV	CCTTC	2 cut(s)	292, 457
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	5 cut(s)	323, 358, 405, 413, 460
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	54, 323, 468
LpnPI	CCDG	5 cut(s)	87, 147, 323, 355, 428
LweI	GCATC	3 cut(s)	148, 335, 382
MaeI	CTAG	2 cut(s)	287, 330
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	4 cut(s)	232, 312, 350, 394
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	14, 168
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	184, 378, 431
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	323, 358, 405, 413, 460
NlaIV	GGNNCC	2 cut(s)	6, 211
NmuCI	GTSAC	2 cut(s)	312, 350
NspI	RCATGY	2 cut(s)	358, 405
PaeI	GCATGC	1 cut(s)	405
PciI	ACATGT	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	245
PscI	ACATGT	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	6, 211
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	6 cut(s)	229, 258, 303, 312, 352, 473
SfaNI	GCATC	3 cut(s)	148, 335, 382
SinI	GGWCC	1 cut(s)	210
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	3 cut(s)	184, 378, 431
SspMI	CTAG	2 cut(s)	287, 330
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	32, 376, 414
TasI	AATT	3 cut(s)	184, 378, 431
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	141, 151
TseFI	GTSAC	2 cut(s)	312, 350
Tsp45I	GTSAC	2 cut(s)	312, 350
TspDTI	ATGAA	3 cut(s)	272, 328, 444
TspRI	CASTG	2 cut(s)	141, 151
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	184, 431
XceI	RCATGY	2 cut(s)	358, 405
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	287, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.