Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396995.1

Orthogroup ID

OG0017314

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1251

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396995.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

gtgtcaatttgcaggcacaaagcggttgatagggaggaagttcaatgagccttcaattggagaagatatgaagcaatggccattcaatgtgaaagagaagcgtgacatgccggttgtttctgtcaattacaaaaaccaatggaaacaattttgctgtcaagaaatttctgccatgattgtctcaaagttgcatcaacttgctgaggatgatttaggttgttgcgtggaggaggctgtgatcagtgtgcctgctttctttactgattcacaaagacaagctatgattgacgccggtgttatagcagggctgaatgtgctccaaatagttaatgaaggaactgcgtcggccataaactatgctgtggagaggagagtttctttaaagaaaaggatactggtttttgacttgggtgcagggagtgttgatgtttctattgctgtgctggaaaagggactgtgtgaaatcattgctactgctggagatacttgtctagggggcatggattttgataatagaattgtggattactgtgtggaaaagataaagaagaaattgaagagggacataagtggaaacaaaggagctttgatgaagttgaggagaggttgtgagagagccaagatagagctctcatcaaaggagaatgcctcaattcatttggaatacgatgggattgacttcaaaacagaactctaccggactatttttgatgaattgtgcactgatctgatcaagaagtgtatggaattagttaacagatgtttgaaggctgaaggtctggttagtagtgatgtggatgaggttgtacttgtgggcggttgtgctcaaatcccagctgtgcagcagcgattaagatcctgcttggatggtaaggttcttgttgaagtaaagtcaaatgagactgttgcagctggttccgcatatctcggggcatccttaagtggtatgttcaatgatctagtttgccgagatgttgcaaacttgtcatttacctgtgaatatagggttactggcttatcccccaactctcttaagtcgaaaattgcaaacaagaaaagggtgctgatttctaagaatactccaattccatcaaagaattgccagatcaatgtgcctattatcaggagcgttcttatgccaaatgacagaaaaattgttttgaagatatatgaaggggataacaatgtactgggagagattgaaggtggaaaagttgaaaatacttacaagttgttggggaaatttgagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

417

Amino Acids

46.05

Weight (kDa)

8.35

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33871 FvH4_7g32180
rosa_multiflora	Rmu_co8396995.1_g000001 Rmu_sc0008418.1_g000007 Rmu_sc0010238.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278440
rosa_rugosa	Rorug01G0431100 Rorug01G0431200
rosa_samantha	Rh1BG411800 Rh1CG426200 Rh1DG444000
rosa_wichuraiana	Rw0G013330 Rw1G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 817, 919
AclWI	GGATC	1 cut(s)	850
AcoI	YGGCCR	2 cut(s)	78, 346
AcsI	RAATTY	2 cut(s)	163, 1242
AcuI	CTGAAG	1 cut(s)	793
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	2 cut(s)	808, 1189
AfiI	CCNNNNNNNGG	1 cut(s)	57
AflII	CTTAAG	2 cut(s)	938, 1032
AluBI	AGCT	6 cut(s)	279, 585, 629, 837, 912, 1250
AluI	AGCT	6 cut(s)	279, 585, 629, 837, 912, 1250
Alw21I	GWGCWC	4 cut(s)	319, 631, 723, 827
Alw26I	GTCTC	2 cut(s)	185, 894
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	850
Ama87I	CYCGRG	1 cut(s)	927
AoxI	GGCC	2 cut(s)	78, 346
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	842, 845, 909
ApoI	RAATTY	2 cut(s)	163, 1242
AvaI	CYCGRG	1 cut(s)	927
BaeGI	GKGCMC	1 cut(s)	723
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	631
Bbv12I	GWGCWC	4 cut(s)	319, 631, 723, 827
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	854, 857, 921
BccI	CCATC	3 cut(s)	663, 861, 1097
BciVI	GTATCC	1 cut(s)	385
BclI	TGATCA	2 cut(s)	238, 730
BcoDI	GTCTC	2 cut(s)	185, 894
BfaI	CTAG	2 cut(s)	492, 960
BfrI	CTTAAG	2 cut(s)	938, 1032
BfuI	GTATCC	1 cut(s)	385
BisI	GCNGC	3 cut(s)	843, 846, 910
BlsI	GCNGC	3 cut(s)	844, 847, 911
BmeT110I	CYCGRG	1 cut(s)	927
BmiI	GGNNCC	1 cut(s)	917
BmrI	ACTGGG	1 cut(s)	1200
BmsI	GCATC	2 cut(s)	200, 942
BmuI	ACTGGG	1 cut(s)	1200
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BpmI	CTGGAG	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	2 cut(s)	110, 291
Bse1I	ACTGG	3 cut(s)	400, 1016, 1195
Bse3DI	GCAATG	2 cut(s)	81, 466
Bse8I	GATNNNNATC	1 cut(s)	854
BseGI	GGATG	4 cut(s)	212, 803, 872, 933
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	2 cut(s)	81, 466
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	3 cut(s)	400, 1016, 1195
BseRI	GAGGAG	3 cut(s)	243, 383, 614
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	854, 857, 921
BseYI	CCCAGC	1 cut(s)	833
BsgI	GTGCAG	2 cut(s)	433, 861
BshFI	GGCC	2 cut(s)	80, 348
BsiHKAI	GWGCWC	4 cut(s)	319, 631, 723, 827
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	3 cut(s)	111, 292, 698
BslFI	GGGAC	2 cut(s)	466, 576
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	2 cut(s)	185, 894
BsmFI	GGGAC	2 cut(s)	466, 576
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	80, 348
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	4 cut(s)	319, 631, 723, 827
Bsp143I	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
BspACI	CCGC	3 cut(s)	23, 817, 919
BspANI	GGCC	2 cut(s)	80, 348
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	917
BspPI	GGATC	1 cut(s)	850
BspTI	CTTAAG	2 cut(s)	938, 1032
BsrDI	GCAATG	2 cut(s)	81, 466
BsrFI	RCCGGY	2 cut(s)	110, 291
BsrI	ACTGG	3 cut(s)	400, 1016, 1195
BssAI	RCCGGY	2 cut(s)	110, 291
BssMI	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
BssNI	GRCGYC	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	457, 531, 905
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	289
BstAFI	CTTAAG	2 cut(s)	938, 1032
BstC8I	GCNNGC	2 cut(s)	14, 250
BstDEI	CTNAG	2 cut(s)	202, 1072
BstF5I	GGATG	4 cut(s)	212, 803, 872, 933
BstKTI	GATC	6 cut(s)	241, 728, 733, 858, 959, 1108
BstMAI	GTCTC	2 cut(s)	185, 894
BstMBI	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 314, 918
BstNSI	RCATGY	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	854, 857, 921
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	80, 348
BtsCI	GGATG	4 cut(s)	212, 803, 872, 933
BtsIMutI	CAGTG	2 cut(s)	248, 721
Cac8I	GCNNGC	2 cut(s)	14, 250
Cfr10I	RCCGGY	2 cut(s)	110, 291
CseI	GACGC	2 cut(s)	297, 331
Csp6I	GTAC	2 cut(s)	807, 1188
CviAII	CATG	3 cut(s)	107, 173, 500
CviQI	GTAC	2 cut(s)	807, 1188
DdeI	CTNAG	2 cut(s)	202, 1072
DpnI	GATC	6 cut(s)	240, 727, 732, 857, 958, 1107
DpnII	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
DraI	TTTAAA	1 cut(s)	382
EaeI	YGGCCR	2 cut(s)	78, 346
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	793
Eco88I	CYCGRG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	631
FaeI	CATG	3 cut(s)	110, 176, 503
FaqI	GGGAC	2 cut(s)	466, 576
FatI	CATG	3 cut(s)	106, 172, 499
FbaI	TGATCA	2 cut(s)	238, 730
Fnu4HI	GCNGC	3 cut(s)	843, 846, 910
FokI	GGATG	4 cut(s)	219, 810, 879, 920
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	3 cut(s)	843, 846, 910
FspBI	CTAG	2 cut(s)	492, 960
GluI	GCNGC	3 cut(s)	843, 846, 910
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	80, 348
HapII	CCGG	3 cut(s)	111, 292, 698
HgaI	GACGC	2 cut(s)	297, 331
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	110, 176, 503
HincII	GTYRAC	1 cut(s)	755
HindII	GTYRAC	1 cut(s)	755
HinfI	GANTC	1 cut(s)	264
HpaI	GTTAAC	1 cut(s)	755
HpaII	CCGG	3 cut(s)	111, 292, 698
Hpy166II	GTNNAC	2 cut(s)	721, 755
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	3 cut(s)	159, 734, 1124
Hpy8I	GTNNAC	2 cut(s)	721, 755
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	6 cut(s)	61, 327, 761, 768, 1167, 1197
HpyCH4III	ACNGT	3 cut(s)	457, 531, 905
HpyCH4V	TGCA	8 cut(s)	12, 191, 414, 721, 842, 909, 978, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 314, 918
HpyF3I	CTNAG	2 cut(s)	202, 1072
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	110, 176, 503
Ksp22I	TGATCA	2 cut(s)	238, 730
KspAI	GTTAAC	1 cut(s)	755
Kzo9I	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
LmnI	GCTCC	3 cut(s)	322, 582, 1126
Lsp1109I	GCAGC	3 cut(s)	854, 857, 921
LweI	GCATC	2 cut(s)	200, 942
MaeI	CTAG	2 cut(s)	492, 960
MaeIII	GTNAC	2 cut(s)	102, 1007
MalI	GATC	6 cut(s)	240, 727, 732, 857, 958, 1107
MboI	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
MboII	GAAGA	4 cut(s)	75, 560, 569, 1175
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	4 cut(s)	319, 631, 723, 827
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	6 cut(s)	328, 381, 754, 852, 939, 1033
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	837, 912
MspCI	CTTAAG	2 cut(s)	938, 1032
MspI	CCGG	3 cut(s)	111, 292, 698
MunI	CAATTG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	650
MwoI	GCNNNNNNNGC	3 cut(s)	107, 314, 918
NdeII	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
NlaIII	CATG	3 cut(s)	110, 176, 503
NlaIV	GGNNCC	1 cut(s)	917
NmeAIII	GCCGAG	1 cut(s)	993
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	110
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	844, 847, 911
Psp124BI	GAGCTC	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	833
PspN4I	GGNNCC	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	855
PvuII	CAGCTG	2 cut(s)	837, 912
RsaI	GTAC	2 cut(s)	808, 1189
RsaNI	GTAC	2 cut(s)	807, 1188
SacI	GAGCTC	1 cut(s)	631
SaqAI	TTAA	6 cut(s)	328, 381, 754, 852, 939, 1033
SatI	GCNGC	3 cut(s)	843, 846, 910
Sau3AI	GATC	6 cut(s)	238, 725, 730, 855, 956, 1105
SduI	GDGCHC	4 cut(s)	319, 631, 723, 827
SfaNI	GCATC	2 cut(s)	200, 942
SgrAI	CRCCGGYG	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	938, 1032
SmoI	CTYRAG	2 cut(s)	938, 1032
SsiI	CCGC	3 cut(s)	23, 817, 919
SspMI	CTAG	2 cut(s)	492, 960
SstI	GAGCTC	1 cut(s)	631
TaaI	ACNGT	3 cut(s)	457, 531, 905
TaqI	TCGA	1 cut(s)	1038
TatI	WGTACW	2 cut(s)	806, 1187
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	6 cut(s)	328, 381, 754, 852, 939, 1033
Tru9I	TTAA	6 cut(s)	328, 381, 754, 852, 939, 1033
TscAI	CASTG	2 cut(s)	248, 728
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	3 cut(s)	842, 845, 909
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	6 cut(s)	84, 346, 606, 645, 727, 1186
TspRI	CASTG	2 cut(s)	248, 728
Vha464I	CTTAAG	2 cut(s)	938, 1032
VneI	GTGCAC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	163, 1242
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	492, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.