Rw1G039670
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
67178938 .. 67181411
2474 bp
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UTR
Exon/CDS
Intron
Rw1G039670.1

Sequence Viewer

Length: 1602 bp
ATGTCTTCCTCTGAAAAGCCTCCGGTGATCGGAATTGACATCGGCACCGCCTACTCGTCCGTCGGAGTTTGGGATCCAAGCCTCGGTCGCGTGAGAATCATCGCCGACGAGTACGGCAACACTCAGATTCCTTCATGTGTGGCTTTCACTGAAACCCACCGTGTGATTGGTACCGCCGCCTACGATGTGAATCAGATCAGTTCTAACCTCGGGAACACTATCTTCGGCACAAAGCGGTTGATAGGGAGGAAGTTCAATGAGCCTTCAATTGGAGAAGATATGAAGCAATGGCCATTCAATGTGAAAGAGAAGCGTGACATGCCGGTTGTTTCTGTCAATTACAAAAACCAATGGAAACAATTTTGCTGTCAAGAAATTTCTGCCATGATCGTCTCAAAGTTGCATCAACTTGCTGAGGATGATTTAGGTTGTTGCGTGGAGGAGGCTGTGATCAGTGTGCCTGCTTTCTTTACTGATTCACAAAGACAAGCTATGATTGACGCCGGTGTTATAGCAGGGCTGAATGTGCTCCAAATAGTTAATGAAGGAACTGCATCGGCCATAAACTATGCTGTGGAGAGGAGAGTTTCTCGAAAGAAAAGAATACTGGTTTTTGACTTGGGTGCAGGGAGTGTTGATGTTTCTATTGCTGTGCTGGAAAAGGGACTGTGTGAAATCATTGCTACTGCTGGAGATACTTGTCTAGGGGGCATGGATTTTGATAATAGAATTGTGGATTACTGTGTGGAAAAGATAAAGAAGAAATTGAAGAGGGACATAAGTGGAAACAAAGGAGCTTTGATGATGTTGAGGAGAGGTTGTGAGAGAGCCAAGATAGAGCTCTCATCAAAGGAGAATGCCTCGATTCATTTGGAATACGATGGGATTGACTTCAAAACAGAACTCTACCGGACTATTTTTGATGAACTGTGCACTGATCTGATCAAGAAGTGTATGGAATTAGTTAACAGATGTTTGAAGGCTGAAGGTCTGGTTAGTAGTGATGTGGATGAGGTTGTACTTGTGGGCGGTTGTGCTCAAATCCCAGCTGTGCAGCAGCGATTAAGATCCTGCTTGGATGGTAAGGTTCTTGTTGAAGTAAAGTCAAATGAGACTGTTGCAGCTGGTTCCGCATATCTCGGGGCATCCTTAAGTGGTATGTTCAATGATCTAGTTTGCCGAGATGTTGCAAACTTGTCATTTACCTGTGAATATAGGGTTACTGGCTTATCCCCCAACTCTCTTAAGTCGAAAATTGCAAACAAGAAAAGGGTGCTGATTTCTAAGAATACTCCAATTCCATCAAAGAATTGCCAGATCAATGTGCCTATTATCAGGAGCGTTCTTATGCCAAATGACAGAAAAATTGTTTTGAAGATATATGAAGGGGATAACAATGTACTGGGAGAGATTGAAGGTGGAAAAGTTGAAAATACTTGCAAGTTGTTGGGGAAATTTGAGCTGAGCACTAAGGGTAGTGACCTTGTCTCTGTTATATTCAAGGCTGATACAAATGGGATCCTCAATGTGTCTGCTCAGGGAAATGAAGACAGCTATATTACAATCACCAGTGACATTAATTGGCCGATTGACTACTATTGA

Protein Analysis

533

Amino Acids

58.47

Weight (kDa)

6.14

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 516 3e-130 Hsp70 protein
MreB_Mbl PF06723 129 - 379 3.7e-11 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 44, 170
AccII CGCG 1 cut(s) 90
AciI CCGC 6 cut(s) 48, 174, 177, 235, 1029, 1131
AclWI GGATC 5 cut(s) 68, 81, 1062, 1513, 1526
AcoI YGGCCR 3 cut(s) 290, 558, 1583
AcsI RAATTY 2 cut(s) 375, 1454
AcuI CTGAAG 1 cut(s) 1005
AcyI GRCGYC 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 113, 172, 1020, 1401
AfiI CCNNNNNNNGG 3 cut(s) 29, 83, 269
AflII CTTAAG 2 cut(s) 1150, 1244
AluBI AGCT 7 cut(s) 491, 797, 841, 1049, 1124, 1462, 1554
AluI AGCT 7 cut(s) 491, 797, 841, 1049, 1124, 1462, 1554
Alw21I GWGCWC 5 cut(s) 531, 843, 935, 1039, 1469
Alw26I GTCTC 3 cut(s) 397, 1106, 1492
Alw44I GTGCAC 1 cut(s) 931
AlwI GGATC 5 cut(s) 68, 81, 1062, 1513, 1526
Ama87I CYCGRG 2 cut(s) 209, 1139
AoxI GGCC 3 cut(s) 290, 558, 1583
ApaLI GTGCAC 1 cut(s) 931
ApeKI GCWGC 3 cut(s) 1054, 1057, 1121
ApoI RAATTY 2 cut(s) 375, 1454
AseI ATTAAT 1 cut(s) 1578
Asp718I GGTACC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 37, 1558
AvaI CYCGRG 2 cut(s) 209, 1139
BaeGI GKGCMC 1 cut(s) 935
BalI TGGCCA 1 cut(s) 292
BamHI GGATCC 2 cut(s) 73, 1518
BanI GGYRCC 2 cut(s) 44, 170
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 1554
Bbv12I GWGCWC 5 cut(s) 531, 843, 935, 1039, 1469
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 1066, 1069, 1133
BccI CCATC 3 cut(s) 875, 1073, 1309
BceAI ACGGC 1 cut(s) 130
BclI TGATCA 2 cut(s) 450, 942
BcoDI GTCTC 3 cut(s) 397, 1106, 1492
BfaI CTAG 2 cut(s) 704, 1172
BfrI CTTAAG 2 cut(s) 1150, 1244
BisI GCNGC 4 cut(s) 177, 1055, 1058, 1122
BlpI GCTNAGC 1 cut(s) 1463
BlsI GCNGC 4 cut(s) 178, 1056, 1059, 1123
BmeT110I CYCGRG 2 cut(s) 209, 1139
BmiI GGNNCC 5 cut(s) 46, 75, 172, 1129, 1520
BmrI ACTGGG 1 cut(s) 1412
BmsI GCATC 3 cut(s) 412, 563, 1154
BmuI ACTGGG 1 cut(s) 1412
BpiI GAAGAC 1 cut(s) 1554
BplI GAGNNNNNCTC 4 cut(s) 574, 606, 845, 877
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 2 cut(s) 414, 1536
Bpu1102I GCTNAGC 1 cut(s) 1463
BsaBI GATNNNNATC 2 cut(s) 189, 1066
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 82, 208
BsaWI WCCGGW 2 cut(s) 22, 909
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 83, 269
Bse118I RCCGGY 2 cut(s) 322, 503
Bse1I ACTGG 4 cut(s) 612, 1228, 1407, 1569
Bse3DI GCAATG 2 cut(s) 293, 678
Bse8I GATNNNNATC 2 cut(s) 189, 1066
BseDI CCNNGG 2 cut(s) 82, 208
BseGI GGATG 4 cut(s) 424, 1015, 1084, 1145
BseJI GATNNNNATC 2 cut(s) 189, 1066
BseLI CCNNNNNNNGG 3 cut(s) 29, 83, 269
BseMI GCAATG 2 cut(s) 293, 678
BseMII CTCAG 4 cut(s) 137, 405, 1454, 1550
BseNI ACTGG 4 cut(s) 612, 1228, 1407, 1569
BseRI GAGGAG 3 cut(s) 455, 595, 826
BseSI GKGCMC 1 cut(s) 935
BseXI GCAGC 3 cut(s) 1066, 1069, 1133
BseYI CCCAGC 1 cut(s) 1045
BsgI GTGCAG 2 cut(s) 645, 1073
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 292, 560, 1585
BshNI GGYRCC 2 cut(s) 44, 170
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 5 cut(s) 531, 843, 935, 1039, 1469
BsiHKCI CYCGRG 2 cut(s) 209, 1139
BsiSI CCGG 4 cut(s) 23, 323, 504, 910
BslFI GGGAC 2 cut(s) 678, 788
BslI CCNNNNNNNGG 3 cut(s) 29, 83, 269
BsmAI GTCTC 3 cut(s) 397, 1106, 1492
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 2 cut(s) 678, 788
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 3 cut(s) 292, 560, 1585
BsoBI CYCGRG 2 cut(s) 209, 1139
Bsp1286I GDGCHC 5 cut(s) 531, 843, 935, 1039, 1469
Bsp1720I GCTNAGC 1 cut(s) 1463
BspACI CCGC 6 cut(s) 48, 174, 177, 235, 1029, 1131
BspANI GGCC 3 cut(s) 292, 560, 1585
BspCNI CTCAG 4 cut(s) 136, 406, 1455, 1549
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 5 cut(s) 46, 75, 172, 1129, 1520
BspPI GGATC 5 cut(s) 68, 81, 1062, 1513, 1526
BspT107I GGYRCC 2 cut(s) 44, 170
BspTI CTTAAG 2 cut(s) 1150, 1244
BsrDI GCAATG 2 cut(s) 293, 678
BsrFI RCCGGY 2 cut(s) 322, 503
BsrI ACTGG 4 cut(s) 612, 1228, 1407, 1569
BssAI RCCGGY 2 cut(s) 322, 503
BssECI CCNNGG 2 cut(s) 82, 208
BssNI GRCGYC 1 cut(s) 501
Bst4CI ACNGT 5 cut(s) 161, 669, 743, 930, 1117
Bst6I CTCTTC 1 cut(s) 764
BstACI GRCGYC 1 cut(s) 501
BstAFI CTTAAG 2 cut(s) 1150, 1244
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 6 cut(s) 123, 414, 1284, 1463, 1470, 1536
BstF5I GGATG 4 cut(s) 424, 1015, 1084, 1145
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 3 cut(s) 397, 1106, 1492
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 87, 319, 526, 1130
BstNSI RCATGY 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 935
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 1066, 1069, 1133
BstV2I GAAGAC 1 cut(s) 1554
BstX2I RGATCY 3 cut(s) 73, 1067, 1518
BstYI RGATCY 3 cut(s) 73, 1067, 1518
BsuRI GGCC 3 cut(s) 292, 560, 1585
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 424, 1015, 1084, 1145
BtsIMutI CAGTG 4 cut(s) 147, 460, 933, 1576
Cac8I GCNNGC 1 cut(s) 462
Cfr10I RCCGGY 2 cut(s) 322, 503
CseI GACGC 1 cut(s) 509
Csp6I GTAC 4 cut(s) 112, 171, 1019, 1400
CviAII CATG 4 cut(s) 135, 319, 385, 712
CviQI GTAC 4 cut(s) 112, 171, 1019, 1400
DdeI CTNAG 6 cut(s) 123, 414, 1284, 1463, 1470, 1536
DraIII CACNNNGTG 1 cut(s) 163
EaeI YGGCCR 3 cut(s) 290, 558, 1583
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 843
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 1005
Eco88I CYCGRG 2 cut(s) 209, 1139
EcoICRI GAGCTC 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 843
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 4 cut(s) 138, 322, 388, 715
FaqI GGGAC 2 cut(s) 678, 788
FatI CATG 4 cut(s) 134, 318, 384, 711
FbaI TGATCA 2 cut(s) 450, 942
Fnu4HI GCNGC 4 cut(s) 177, 1055, 1058, 1122
FokI GGATG 4 cut(s) 431, 1022, 1091, 1132
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 4 cut(s) 177, 1055, 1058, 1122
FspBI CTAG 2 cut(s) 704, 1172
GluI GCNGC 4 cut(s) 177, 1055, 1058, 1122
GsaI CCCAGC 1 cut(s) 1049
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 3 cut(s) 292, 560, 1585
HapII CCGG 4 cut(s) 23, 323, 504, 910
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 4 cut(s) 138, 322, 388, 715
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HinfI GANTC 5 cut(s) 96, 127, 190, 476, 865
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 4 cut(s) 23, 323, 504, 910
HphI GGTGA 2 cut(s) 37, 1558
Hpy166II GTNNAC 2 cut(s) 933, 967
Hpy188I TCNGA 6 cut(s) 13, 32, 65, 126, 195, 942
Hpy188III TCNNGA 5 cut(s) 211, 371, 591, 946, 1336
Hpy8I GTNNAC 2 cut(s) 933, 967
Hpy99I CGWCG 2 cut(s) 65, 110
HpyAV CCTTC 7 cut(s) 141, 273, 539, 973, 980, 1379, 1409
HpyCH4III ACNGT 5 cut(s) 161, 669, 743, 930, 1117
HpyCH4V TGCA 9 cut(s) 403, 554, 626, 933, 1054, 1121, 1190, 1259, 1440
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 319, 526, 1130
HpyF3I CTNAG 6 cut(s) 123, 414, 1284, 1463, 1470, 1536
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 4 cut(s) 138, 322, 388, 715
KpnI GGTACC 1 cut(s) 174
Ksp22I TGATCA 2 cut(s) 450, 942
KspAI GTTAAC 1 cut(s) 967
LmnI GCTCC 3 cut(s) 534, 794, 1338
Lsp1109I GCAGC 3 cut(s) 1066, 1069, 1133
LweI GCATC 3 cut(s) 412, 563, 1154
MaeI CTAG 2 cut(s) 704, 1172
MaeIII GTNAC 4 cut(s) 314, 1219, 1478, 1571
MboII GAAGA 6 cut(s) 214, 287, 772, 781, 1387, 1559
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 3 cut(s) 73, 1067, 1518
MhlI GDGCHC 5 cut(s) 531, 843, 935, 1039, 1469
MlsI TGGCCA 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 292
MscI TGGCCA 1 cut(s) 292
MseI TTAA 6 cut(s) 540, 966, 1064, 1151, 1245, 1578
Msp20I TGGCCA 1 cut(s) 292
MspA1I CMGCKG 2 cut(s) 1049, 1124
MspCI CTTAAG 2 cut(s) 1150, 1244
MspI CCGG 4 cut(s) 23, 323, 504, 910
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 862
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 87, 319, 526, 1130
NlaIII CATG 4 cut(s) 138, 322, 388, 715
NlaIV GGNNCC 5 cut(s) 46, 75, 172, 1129, 1520
NmeAIII GCCGAG 1 cut(s) 1205
NmuCI GTSAC 3 cut(s) 314, 1478, 1571
NspI RCATGY 1 cut(s) 322
PctI GAATGC 1 cut(s) 862
PfeI GAWTC 5 cut(s) 96, 127, 190, 476, 865
PflFI GACNNNGTC 1 cut(s) 1484
PkrI GCNGC 4 cut(s) 178, 1056, 1059, 1123
PshBI ATTAAT 1 cut(s) 1578
Psp124BI GAGCTC 1 cut(s) 843
PspFI CCCAGC 1 cut(s) 1045
PspN4I GGNNCC 5 cut(s) 46, 75, 172, 1129, 1520
PsuI RGATCY 3 cut(s) 73, 1067, 1518
PsyI GACNNNGTC 1 cut(s) 1484
PvuII CAGCTG 2 cut(s) 1049, 1124
RsaI GTAC 4 cut(s) 113, 172, 1020, 1401
RsaNI GTAC 4 cut(s) 112, 171, 1019, 1400
SacI GAGCTC 1 cut(s) 843
SaqAI TTAA 6 cut(s) 540, 966, 1064, 1151, 1245, 1578
SatI GCNGC 4 cut(s) 177, 1055, 1058, 1122
SduI GDGCHC 5 cut(s) 531, 843, 935, 1039, 1469
SfaNI GCATC 3 cut(s) 412, 563, 1154
SgrAI CRCCGGYG 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 1150, 1244
SmoI CTYRAG 2 cut(s) 1150, 1244
SsiI CCGC 6 cut(s) 48, 174, 177, 235, 1029, 1131
SspMI CTAG 2 cut(s) 704, 1172
SstI GAGCTC 1 cut(s) 843
TaaI ACNGT 5 cut(s) 161, 669, 743, 930, 1117
TaqI TCGA 3 cut(s) 592, 863, 1250
TaqII GACCGA 1 cut(s) 74
TatI WGTACW 2 cut(s) 1018, 1399
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 5 cut(s) 96, 127, 190, 476, 865
Tru1I TTAA 6 cut(s) 540, 966, 1064, 1151, 1245, 1578
Tru9I TTAA 6 cut(s) 540, 966, 1064, 1151, 1245, 1578
TscAI CASTG 4 cut(s) 154, 460, 940, 1576
TseFI GTSAC 3 cut(s) 314, 1478, 1571
TseI GCWGC 3 cut(s) 1054, 1057, 1121
Tsp45I GTSAC 3 cut(s) 314, 1478, 1571
TspDTI ATGAA 7 cut(s) 123, 296, 558, 857, 939, 1398, 1560
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 4 cut(s) 154, 460, 940, 1576
Tth111I GACNNNGTC 1 cut(s) 1484
Vha464I CTTAAG 2 cut(s) 1150, 1244
VneI GTGCAC 1 cut(s) 931
VspI ATTAAT 1 cut(s) 1578
XapI RAATTY 2 cut(s) 375, 1454
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 2 cut(s) 704, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.