Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010238.1

Orthogroup ID

OG0017314

Physical Location & Seq

Genomic Coordinates Reverse (-)

62003 .. 63775

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010238.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

atgaagcaatggccattcaatgtgaaagagaagcgtgacatgccggttgtttctgtcaattacaaaaaccaatggaaacaattttgctgtcaagaaatttctgccatgattgtctcaaagttgcatcaacttgctgaggatgatttaggttgttgcgtggaggaggctgtgatcagtgtgcctgctttctttactgattcacaaagacaagctatgattgacgccggtgttatagcagggctgaatgtgctccaaatagttaatgaaggaactgcgtcggccataaactatgctgtggagaggagagtttctttaaagaaaaggatactggtttttgacttgggtgcagggagtgttgatgtttctattgctgtgctggaaaagggactgtgtgaaatcattgctactgctggagatacttgtctagggggcatggattttgataatagaattgtggattactgtgtggaaaagataaagaagaaattgaagagggacataagtggaaacaaaggagctttgatgaagttgaggagaggttgtgagagagccaagatagagctctcatcaaaggagaatgcctcaattcatttggaatacgatgggattgacttcaaaacagaactctaccggactatttttgatgaattgtgcactgatctgatcaagaagtgtatggaattagttaacagatgtttgaaggctgaaggtctggttagtagtgatgtggatgaggttgtacttgtgggcggttgtgctcaaatcccagctgtgcagcagcgattaagatcctgcttggatggtaaggttcttgttgaagtaaagtcaaatgagactgttgcagctggttccgcatatctcggggcatccttaagtggtatgttcaatgatctagtttgccgagatgttgcaaacttgtcatttacctgtgaatatagggttactggcttatcccccaactctcttaagtcgaaaattgcaaacaagaaaagggtgctgatttctaagaatactccaattccatcaaagaattgccagatcaatgtgcctattatcaggagcgttcttatgccaaatgacagaaaaattgttttgaagatatatgaaggggataacaatgtactgggagagattgaaggtggaaaagttgaaaatacttacaagttgttggggaaatttgagctaagcaccaagggtagtgaccttgtctctgttatattcaaggctgatacaaatgggatcctcaatgtgtctgctcagggcaatgaagacagctgtattccaatcacccgtgacattggccgattgagtactactgaaattagtaagatgacttcagaagctgctatatacaagtcagaggatgaggagatttggaagaaggttaagagcattaatctatgcaggaatgtaatccaggggactgatatcactgagacttctaagaatgttactgagactttggaggaggtttctgagattttggaggtttctgagactttggaggtttctgagactttggaggaggtttctgagattttggaggttactgagactttggaagaggttacagatattttggatgaggttgctgatactttgaagaaggtttctgatactgtcaagggtattcttgcctctgacacttcgaaaaagattggcaatgctctgaagcaaatgtgcttgtacttgcttggcatgggcatcggtaaaaaaatatgctgctttgtggttattattataattatagttataactcggcggattgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

590

Amino Acids

64.96

Weight (kDa)

5.34

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33871 FvH4_7g32180
rosa_multiflora	Rmu_co8396995.1_g000001 Rmu_sc0008418.1_g000007 Rmu_sc0010238.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278440
rosa_rugosa	Rorug01G0431100 Rorug01G0431200
rosa_samantha	Rh1BG411800 Rh1CG426200 Rh1DG444000
rosa_wichuraiana	Rw0G013330 Rw1G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1742, 1754
AciI	CCGC	3 cut(s)	750, 852, 1762
AclWI	GGATC	3 cut(s)	783, 1234, 1247
AcoI	YGGCCR	3 cut(s)	11, 279, 1300
AcsI	RAATTY	2 cut(s)	96, 1175
AcuI	CTGAAG	3 cut(s)	726, 1320, 1691
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	4 cut(s)	741, 1122, 1312, 1688
AflII	CTTAAG	2 cut(s)	871, 965
AjnI	CCWGG	1 cut(s)	1416
AluBI	AGCT	8 cut(s)	212, 518, 562, 770, 845, 1183, 1275, 1343
AluI	AGCT	8 cut(s)	212, 518, 562, 770, 845, 1183, 1275, 1343
Alw21I	GWGCWC	4 cut(s)	252, 564, 656, 760
Alw26I	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1490, 1508, 1547
Alw44I	GTGCAC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	783, 1234, 1247
AlwNI	CAGNNNCTG	1 cut(s)	1343
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	11, 279, 1300
ApaLI	GTGCAC	1 cut(s)	652
ApeKI	GCWGC	5 cut(s)	775, 778, 842, 1343, 1722
ApoI	RAATTY	2 cut(s)	96, 1175
AseI	ATTAAT	1 cut(s)	1395
AsuHPI	GGTGA	1 cut(s)	1279
AsuII	TTCGAA	1 cut(s)	1649
AvaI	CYCGRG	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	1239
BanII	GRGCYC	1 cut(s)	564
BarI	GAAGNNNNNNTAC	2 cut(s)	1318, 1350
BbsI	GAAGAC	1 cut(s)	1275
Bbv12I	GWGCWC	4 cut(s)	252, 564, 656, 760
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	5 cut(s)	787, 790, 854, 1330, 1709
BccI	CCATC	3 cut(s)	596, 794, 1030
BcgI	CGANNNNNNTGC	2 cut(s)	1687, 1721
BciT130I	CCWGG	1 cut(s)	1418
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	2 cut(s)	171, 663
BcoDI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1490, 1508, 1547
BfaI	CTAG	2 cut(s)	425, 893
BfrI	CTTAAG	2 cut(s)	871, 965
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1723
BlpI	GCTNAGC	1 cut(s)	1184
BlsI	GCNGC	5 cut(s)	777, 780, 844, 1345, 1724
BmcAI	AGTACT	1 cut(s)	1312
Bme1390I	CCNGG	1 cut(s)	1418
BmeT110I	CYCGRG	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	850, 1241
BmrFI	CCNGG	1 cut(s)	1418
BmrI	ACTGGG	1 cut(s)	1133
BmsI	GCATC	3 cut(s)	133, 875, 1713
BmuI	ACTGGG	1 cut(s)	1133
BpiI	GAAGAC	1 cut(s)	1275
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	135, 1257
Bpu1102I	GCTNAGC	1 cut(s)	1184
Bpu14I	TTCGAA	1 cut(s)	1649
BsaBI	GATNNNNATC	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	1191, 1417
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse118I	RCCGGY	2 cut(s)	43, 224
Bse1I	ACTGG	3 cut(s)	333, 949, 1128
Bse3DI	GCAATG	4 cut(s)	14, 399, 1270, 1669
Bse8I	GATNNNNATC	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	1418
BseDI	CCNNGG	2 cut(s)	1191, 1417
BseGI	GGATG	6 cut(s)	145, 736, 805, 866, 1369, 1588
BseJI	GATNNNNATC	1 cut(s)	787
BseMI	GCAATG	4 cut(s)	14, 399, 1270, 1669
BseMII	CTCAG	9 cut(s)	126, 1271, 1425, 1446, 1467, 1485, 1503, 1524, 1542
BseNI	ACTGG	3 cut(s)	333, 949, 1128
BseRI	GAGGAG	6 cut(s)	176, 316, 547, 1382, 1481, 1538
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	5 cut(s)	787, 790, 854, 1330, 1709
BseYI	CCCAGC	1 cut(s)	766
BsgI	GTGCAG	2 cut(s)	366, 794
BshFI	GGCC	3 cut(s)	13, 281, 1302
BsiHKAI	GWGCWC	4 cut(s)	252, 564, 656, 760
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	3 cut(s)	44, 225, 631
BslFI	GGGAC	3 cut(s)	399, 509, 1435
BsmAI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1490, 1508, 1547
BsmFI	GGGAC	3 cut(s)	399, 509, 1435
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	13, 281, 1302
BsoBI	CYCGRG	1 cut(s)	860
Bsp119I	TTCGAA	1 cut(s)	1649
Bsp1286I	GDGCHC	4 cut(s)	252, 564, 656, 760
Bsp143I	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
Bsp1720I	GCTNAGC	1 cut(s)	1184
BspACI	CCGC	3 cut(s)	750, 852, 1762
BspANI	GGCC	3 cut(s)	13, 281, 1302
BspCNI	CTCAG	9 cut(s)	127, 1270, 1426, 1447, 1468, 1486, 1504, 1525, 1543
BspLI	GGNNCC	2 cut(s)	850, 1241
BspPI	GGATC	3 cut(s)	783, 1234, 1247
BspT104I	TTCGAA	1 cut(s)	1649
BspTI	CTTAAG	2 cut(s)	871, 965
BsrDI	GCAATG	4 cut(s)	14, 399, 1270, 1669
BsrFI	RCCGGY	2 cut(s)	43, 224
BsrI	ACTGG	3 cut(s)	333, 949, 1128
BssAI	RCCGGY	2 cut(s)	43, 224
BssECI	CCNNGG	2 cut(s)	1191, 1417
BssMI	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	1191
Bst2UI	CCWGG	1 cut(s)	1418
Bst4CI	ACNGT	4 cut(s)	390, 464, 838, 1621
Bst6I	CTCTTC	2 cut(s)	485, 1557
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	2 cut(s)	871, 965
BstBI	TTCGAA	1 cut(s)	1649
BstC8I	GCNNGC	1 cut(s)	183
BstF5I	GGATG	6 cut(s)	145, 736, 805, 866, 1369, 1588
BstKTI	GATC	7 cut(s)	174, 661, 666, 791, 892, 1041, 1242
BstMAI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1490, 1508, 1547
BstMBI	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 247, 851
BstNI	CCWGG	1 cut(s)	1418
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	1416
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	5 cut(s)	787, 790, 854, 1330, 1709
BstV2I	GAAGAC	1 cut(s)	1275
BstX2I	RGATCY	2 cut(s)	788, 1239
BstYI	RGATCY	2 cut(s)	788, 1239
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	13, 281, 1302
BtsCI	GGATG	6 cut(s)	145, 736, 805, 866, 1369, 1588
BtsIMutI	CAGTG	3 cut(s)	181, 654, 1431
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	1343
Cfr10I	RCCGGY	2 cut(s)	43, 224
CseI	GACGC	2 cut(s)	230, 264
Csp6I	GTAC	4 cut(s)	740, 1121, 1311, 1687
CviAII	CATG	4 cut(s)	40, 106, 433, 1699
CviQI	GTAC	4 cut(s)	740, 1121, 1311, 1687
DpnI	GATC	7 cut(s)	173, 660, 665, 790, 891, 1040, 1241
DpnII	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	3 cut(s)	11, 279, 1300
Eam1104I	CTCTTC	2 cut(s)	485, 1557
EarI	CTCTTC	2 cut(s)	485, 1557
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	1191
Eco24I	GRGCYC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	1429
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	3 cut(s)	726, 1320, 1691
Eco88I	CYCGRG	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	1416
EcoRV	GATATC	1 cut(s)	1429
EcoT14I	CCWWGG	1 cut(s)	1191
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	1191
FaeI	CATG	4 cut(s)	43, 109, 436, 1702
FaqI	GGGAC	3 cut(s)	399, 509, 1435
FatI	CATG	4 cut(s)	39, 105, 432, 1698
FbaI	TGATCA	2 cut(s)	171, 663
Fnu4HI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1723
FokI	GGATG	6 cut(s)	152, 743, 812, 853, 1376, 1595
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1723
FspBI	CTAG	2 cut(s)	425, 893
GluI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1723
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	13, 281, 1302
HapII	CCGG	3 cut(s)	44, 225, 631
HgaI	GACGC	2 cut(s)	230, 264
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	43, 109, 436, 1702
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	1 cut(s)	197
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	3 cut(s)	44, 225, 631
HphI	GGTGA	1 cut(s)	1279
Hpy166II	GTNNAC	2 cut(s)	654, 688
Hpy188III	TCNNGA	3 cut(s)	92, 667, 1057
Hpy8I	GTNNAC	2 cut(s)	654, 688
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	7 cut(s)	260, 694, 701, 1100, 1130, 1375, 1600
HpyCH4III	ACNGT	4 cut(s)	390, 464, 838, 1621
HpyCH4V	TGCA	8 cut(s)	124, 347, 654, 775, 842, 911, 980, 1404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 247, 851
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	43, 109, 436, 1702
Ksp22I	TGATCA	2 cut(s)	171, 663
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
LmnI	GCTCC	3 cut(s)	255, 515, 1059
Lsp1109I	GCAGC	5 cut(s)	787, 790, 854, 1330, 1709
LweI	GCATC	3 cut(s)	133, 875, 1713
MaeI	CTAG	2 cut(s)	425, 893
MaeIII	GTNAC	7 cut(s)	35, 940, 1199, 1292, 1450, 1546, 1567
MalI	GATC	7 cut(s)	173, 660, 665, 790, 891, 1040, 1241
MboI	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
MboII	GAAGA	7 cut(s)	493, 502, 1108, 1280, 1390, 1574, 1615
MflI	RGATCY	2 cut(s)	788, 1239
MhlI	GDGCHC	4 cut(s)	252, 564, 656, 760
MlsI	TGGCCA	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	8 cut(s)	261, 314, 687, 785, 872, 966, 1386, 1395
Msp20I	TGGCCA	1 cut(s)	13
MspA1I	CMGCKG	3 cut(s)	770, 845, 1275
MspCI	CTTAAG	2 cut(s)	871, 965
MspI	CCGG	3 cut(s)	44, 225, 631
MspR9I	CCNGG	1 cut(s)	1418
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	1418
MwoI	GCNNNNNNNGC	3 cut(s)	40, 247, 851
NdeII	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
NlaIII	CATG	4 cut(s)	43, 109, 436, 1702
NlaIV	GGNNCC	2 cut(s)	850, 1241
NmeAIII	GCCGAG	2 cut(s)	926, 1738
NmuCI	GTSAC	3 cut(s)	35, 1199, 1292
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	1649
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	1205
PkrI	GCNGC	5 cut(s)	777, 780, 844, 1345, 1724
PshBI	ATTAAT	1 cut(s)	1395
PsiI	TTATAA	2 cut(s)	1742, 1754
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	1416
PspN4I	GGNNCC	2 cut(s)	850, 1241
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	2 cut(s)	788, 1239
PsyI	GACNNNGTC	1 cut(s)	1205
PvuII	CAGCTG	3 cut(s)	770, 845, 1275
RsaI	GTAC	4 cut(s)	741, 1122, 1312, 1688
RsaNI	GTAC	4 cut(s)	740, 1121, 1311, 1687
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	8 cut(s)	261, 314, 687, 785, 872, 966, 1386, 1395
SatI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1723
Sau3AI	GATC	7 cut(s)	171, 658, 663, 788, 889, 1038, 1239
ScaI	AGTACT	1 cut(s)	1312
ScrFI	CCNGG	1 cut(s)	1418
SduI	GDGCHC	4 cut(s)	252, 564, 656, 760
SfaNI	GCATC	3 cut(s)	133, 875, 1713
SfuI	TTCGAA	1 cut(s)	1649
SgrAI	CRCCGGYG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	871, 965
SmoI	CTYRAG	2 cut(s)	871, 965
SsiI	CCGC	3 cut(s)	750, 852, 1762
SspMI	CTAG	2 cut(s)	425, 893
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	1416
StyI	CCWWGG	1 cut(s)	1191
TaaI	ACNGT	4 cut(s)	390, 464, 838, 1621
TaqI	TCGA	2 cut(s)	971, 1649
TatI	WGTACW	4 cut(s)	739, 1120, 1310, 1686
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	8 cut(s)	261, 314, 687, 785, 872, 966, 1386, 1395
Tru9I	TTAA	8 cut(s)	261, 314, 687, 785, 872, 966, 1386, 1395
TscAI	CASTG	3 cut(s)	181, 661, 1438
TseFI	GTSAC	3 cut(s)	35, 1199, 1292
TseI	GCWGC	5 cut(s)	775, 778, 842, 1343, 1722
Tsp45I	GTSAC	3 cut(s)	35, 1199, 1292
TspDTI	ATGAA	7 cut(s)	17, 279, 539, 578, 660, 1119, 1281
TspRI	CASTG	3 cut(s)	181, 661, 1438
Tth111I	GACNNNGTC	1 cut(s)	1205
Vha464I	CTTAAG	2 cut(s)	871, 965
VneI	GTGCAC	1 cut(s)	652
VspI	ATTAAT	1 cut(s)	1395
XapI	RAATTY	2 cut(s)	96, 1175
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	425, 893
ZrmI	AGTACT	1 cut(s)	1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.