Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008418.1

Orthogroup ID

OG0017314

Physical Location & Seq

Genomic Coordinates Reverse (-)

22477 .. 24902

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008418.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

atgtcttcctctgaaaagcctccggtgatcggaattgacatcggcaccgcctactcgtccgtcggagtttgggatccaaacctcggtagcgtgagaatcatcgccgacgagtacggcaacactcagattccttcgtgtgtggctttcactgaaacccaccgtgtgattggtaccgccgcctacgatgtgaatcagatcagttctaacctcgggaacactatcttcggcacaaagcggttgatagggaggaagttcaatgagccttcaattggagaagatatgaagcaatggccattcaatgtgaaagagaagcgtgacatgccggttgtttctgtcaattacaaaaaccaatggaaacaattttgctgtcaagaaatttctgccatgattgtctcaaagttgcatcaacttgctgaggatgatttaggttgttgcgtggaggaggctgtgatcagtgtgcctgctttctttactgattcacaaagacaagctatgattgacgccggtgttatagcagggctgaatgtgctccaaatagttaatgaaggaactgcgtcggccataaactatgctgtggagaggagagtttctttaaagaaaaggatactggtttttgacttgggtgcagggagtgttgatgtttctattgctgtgctggaaaagggactgtgtgaaatcattgctactgctggagatacttgtctagggggcatggattttgataatagaattgtggattactgtgtggaaaagataaagaagaaattgaagagggacataagtggaaacaaaggagctttgatgaagttgaggagaggttgtgagagagccaagatagagctctcatcaaaggagaatgcctcaattcatttggaatacgatgggattgacttcaaaacagaactctaccggactatttttgatgaattgtgcactgatctgatcaagaagtgtatggaattagttaacagatgtttgaaggctgaaggtctggttagtagtgatgtggatgaggctgtacttgtgggcggttgtgctcaaatcccagctgtgcagcagcgattaagatcctgcttggatggtaaggttcttgttgaagtaaagtcaaatgagactgttgcagctggttccgcatatctcggggcatccttaagtggtatgttcaatgatctagtttgccgagatgttgcaaacttgtcatttacctgtgaatatagggttactggcttatcccccaactctcttaagtcgaaaattgcaaacaagaaaagggtgctgatttctaagaatactccaattccatcaaagaattgccagatcaatgtgcctattgtcaggagcgttcttatgccaaatgacagaaaaattgttttgaagatatatgaaggggataacaatgtactgggagagattgaaggtggaaaagttgaaaatacttacaagttgttggggaaatttgagctgagcactaagggtagtgaccttgtctctgttatattcaaggctgatacaaatgggatcctcaatgtgtctgctcagggaaatgaagacagctatattccaatcaccagtgacattggccgattgactactattgaaattagtaaaatgacttcagaagctgctatatacaagtcagaagatgaggagatttggaagaaggttaagagcattaatatatgcaggaatgtaattcaggggactgatatcactgagactcctaagaatgttactgagactgagactttggaggaggttaccgagactgagactttggaggaaattaccgagactgagactttcgaggaggtaaccgagactgagattttggaggaggttaccgagactgagactctggaggagtttactgagactctggaggaggtttctgagactttggaggagattcctgatactttgaagaaggtaactgatacttgcaaggatattcttgcctctgacacttcaaaaaacatcagcaatgctctgaagcaaatttggttatacttgcttggcacgagcatcggtgaaaaaatatgcttcggggttattcttatacttatacttattattaagaggattgtagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

696

Amino Acids

76.66

Weight (kDa)

4.89

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33871 FvH4_7g32180
rosa_multiflora	Rmu_co8396995.1_g000001 Rmu_sc0008418.1_g000007 Rmu_sc0010238.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278440
rosa_rugosa	Rorug01G0431100 Rorug01G0431200
rosa_samantha	Rh1BG411800 Rh1CG426200 Rh1DG444000
rosa_wichuraiana	Rw0G013330 Rw1G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	2 cut(s)	44, 170
AciI	CCGC	6 cut(s)	48, 174, 177, 235, 1029, 1131
AclWI	GGATC	5 cut(s)	68, 81, 1062, 1513, 1526
AcoI	YGGCCR	3 cut(s)	290, 558, 1579
AcsI	RAATTY	3 cut(s)	375, 1454, 1995
AcuI	CTGAAG	3 cut(s)	1005, 1599, 2009
AcyI	GRCGYC	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	4 cut(s)	113, 172, 1020, 1401
AfiI	CCNNNNNNNGG	3 cut(s)	29, 83, 269
AflII	CTTAAG	2 cut(s)	1150, 1244
AluBI	AGCT	8 cut(s)	491, 797, 841, 1049, 1124, 1462, 1554, 1622
AluI	AGCT	8 cut(s)	491, 797, 841, 1049, 1124, 1462, 1554, 1622
Alw21I	GWGCWC	5 cut(s)	531, 843, 935, 1039, 1469
Alw44I	GTGCAC	1 cut(s)	931
AlwI	GGATC	5 cut(s)	68, 81, 1062, 1513, 1526
AlwNI	CAGNNNCTG	1 cut(s)	1622
Ama87I	CYCGRG	2 cut(s)	209, 1139
AoxI	GGCC	3 cut(s)	290, 558, 1579
ApaLI	GTGCAC	1 cut(s)	931
ApeKI	GCWGC	4 cut(s)	1054, 1057, 1121, 1622
ApoI	RAATTY	3 cut(s)	375, 1454, 1995
ArsI	GACNNNNNNTTYG	6 cut(s)	1729, 1756, 1761, 1788, 1810, 1842
AseI	ATTAAT	1 cut(s)	1674
Asp718I	GGTACC	1 cut(s)	170
AsuHPI	GGTGA	3 cut(s)	37, 1558, 2039
AvaI	CYCGRG	2 cut(s)	209, 1139
BaeGI	GKGCMC	1 cut(s)	935
BalI	TGGCCA	1 cut(s)	292
BamHI	GGATCC	2 cut(s)	73, 1518
BanI	GGYRCC	2 cut(s)	44, 170
BanII	GRGCYC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	2 cut(s)	1597, 1629
BauI	CACGAG	1 cut(s)	2017
BbsI	GAAGAC	1 cut(s)	1554
Bbv12I	GWGCWC	5 cut(s)	531, 843, 935, 1039, 1469
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	1066, 1069, 1133, 1609
BccI	CCATC	3 cut(s)	875, 1073, 1309
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	2005, 2039
BciVI	GTATCC	1 cut(s)	597
BclI	TGATCA	2 cut(s)	450, 942
BfaI	CTAG	2 cut(s)	704, 1172
BfrI	CTTAAG	2 cut(s)	1150, 1244
BfuI	GTATCC	1 cut(s)	597
BisI	GCNGC	5 cut(s)	177, 1055, 1058, 1122, 1623
BlpI	GCTNAGC	1 cut(s)	1463
BlsI	GCNGC	5 cut(s)	178, 1056, 1059, 1123, 1624
BmeT110I	CYCGRG	2 cut(s)	209, 1139
BmiI	GGNNCC	5 cut(s)	46, 75, 172, 1129, 1520
BmrI	ACTGGG	1 cut(s)	1412
BmsI	GCATC	3 cut(s)	412, 1154, 2031
BmuI	ACTGGG	1 cut(s)	1412
BpiI	GAAGAC	1 cut(s)	1554
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	3 cut(s)	711, 1877, 1898
Bpu10I	CCTNAGC	2 cut(s)	414, 1536
Bpu1102I	GCTNAGC	1 cut(s)	1463
BsaBI	GATNNNNATC	2 cut(s)	189, 1066
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	82, 208
BsaWI	WCCGGW	2 cut(s)	22, 909
BsaXI	ACNNNNNCTCC	4 cut(s)	805, 835, 1702, 1732
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 83, 269
Bse118I	RCCGGY	2 cut(s)	322, 503
Bse1I	ACTGG	4 cut(s)	612, 1228, 1407, 1569
Bse3DI	GCAATG	3 cut(s)	293, 678, 1987
Bse8I	GATNNNNATC	2 cut(s)	189, 1066
BseDI	CCNNGG	2 cut(s)	82, 208
BseGI	GGATG	4 cut(s)	424, 1015, 1084, 1145
BseJI	GATNNNNATC	2 cut(s)	189, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	29, 83, 269
BseMI	GCAATG	3 cut(s)	293, 678, 1987
BseNI	ACTGG	4 cut(s)	612, 1228, 1407, 1569
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	4 cut(s)	1066, 1069, 1133, 1609
BseYI	CCCAGC	1 cut(s)	1045
BsgI	GTGCAG	2 cut(s)	645, 1073
BshFI	GGCC	3 cut(s)	292, 560, 1581
BshNI	GGYRCC	2 cut(s)	44, 170
BsiHKAI	GWGCWC	5 cut(s)	531, 843, 935, 1039, 1469
BsiHKCI	CYCGRG	2 cut(s)	209, 1139
BsiSI	CCGG	4 cut(s)	23, 323, 504, 910
BslFI	GGGAC	3 cut(s)	678, 788, 1714
BslI	CCNNNNNNNGG	3 cut(s)	29, 83, 269
BsmFI	GGGAC	3 cut(s)	678, 788, 1714
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	3 cut(s)	292, 560, 1581
BsoBI	CYCGRG	2 cut(s)	209, 1139
Bsp1286I	GDGCHC	5 cut(s)	531, 843, 935, 1039, 1469
Bsp1720I	GCTNAGC	1 cut(s)	1463
BspACI	CCGC	6 cut(s)	48, 174, 177, 235, 1029, 1131
BspANI	GGCC	3 cut(s)	292, 560, 1581
BspLI	GGNNCC	5 cut(s)	46, 75, 172, 1129, 1520
BspPI	GGATC	5 cut(s)	68, 81, 1062, 1513, 1526
BspT107I	GGYRCC	2 cut(s)	44, 170
BspTI	CTTAAG	2 cut(s)	1150, 1244
BsrDI	GCAATG	3 cut(s)	293, 678, 1987
BsrFI	RCCGGY	2 cut(s)	322, 503
BsrI	ACTGG	4 cut(s)	612, 1228, 1407, 1569
BssAI	RCCGGY	2 cut(s)	322, 503
BssECI	CCNNGG	2 cut(s)	82, 208
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	2017
Bst2BI	CACGAG	1 cut(s)	2017
Bst4CI	ACNGT	4 cut(s)	161, 669, 743, 1117
Bst6I	CTCTTC	1 cut(s)	764
BstACI	GRCGYC	1 cut(s)	501
BstAFI	CTTAAG	2 cut(s)	1150, 1244
BstC8I	GCNNGC	1 cut(s)	462
BstEII	GGTNACC	3 cut(s)	1756, 1810, 1837
BstF5I	GGATG	4 cut(s)	424, 1015, 1084, 1145
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 526, 1130
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	3 cut(s)	1756, 1810, 1837
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	4 cut(s)	1066, 1069, 1133, 1609
BstV2I	GAAGAC	1 cut(s)	1554
BstX2I	RGATCY	3 cut(s)	73, 1067, 1518
BstYI	RGATCY	3 cut(s)	73, 1067, 1518
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	3 cut(s)	292, 560, 1581
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	424, 1015, 1084, 1145
BtsIMutI	CAGTG	5 cut(s)	147, 460, 933, 1576, 1710
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	1622
Cfr10I	RCCGGY	2 cut(s)	322, 503
CseI	GACGC	2 cut(s)	509, 543
Csp6I	GTAC	4 cut(s)	112, 171, 1019, 1400
CviAII	CATG	3 cut(s)	319, 385, 712
CviQI	GTAC	4 cut(s)	112, 171, 1019, 1400
DraI	TTTAAA	1 cut(s)	594
DraIII	CACNNNGTG	1 cut(s)	163
EaeI	YGGCCR	3 cut(s)	290, 558, 1579
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	843
Eco32I	GATATC	1 cut(s)	1708
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	3 cut(s)	1005, 1599, 2009
Eco88I	CYCGRG	2 cut(s)	209, 1139
Eco91I	GGTNACC	3 cut(s)	1756, 1810, 1837
EcoICRI	GAGCTC	1 cut(s)	841
EcoO65I	GGTNACC	3 cut(s)	1756, 1810, 1837
EcoRV	GATATC	1 cut(s)	1708
EcoT38I	GRGCYC	1 cut(s)	843
FaeI	CATG	3 cut(s)	322, 388, 715
FaqI	GGGAC	3 cut(s)	678, 788, 1714
FatI	CATG	3 cut(s)	318, 384, 711
FbaI	TGATCA	2 cut(s)	450, 942
Fnu4HI	GCNGC	5 cut(s)	177, 1055, 1058, 1122, 1623
FokI	GGATG	4 cut(s)	431, 1022, 1091, 1132
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	5 cut(s)	177, 1055, 1058, 1122, 1623
FspBI	CTAG	2 cut(s)	704, 1172
GluI	GCNGC	5 cut(s)	177, 1055, 1058, 1122, 1623
GsaI	CCCAGC	1 cut(s)	1049
GsuI	CTGGAG	3 cut(s)	711, 1877, 1898
HaeIII	GGCC	3 cut(s)	292, 560, 1581
HapII	CCGG	4 cut(s)	23, 323, 504, 910
HgaI	GACGC	2 cut(s)	509, 543
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	322, 388, 715
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	8 cut(s)	96, 127, 190, 476, 1717, 1852, 1873, 1906
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	4 cut(s)	23, 323, 504, 910
HphI	GGTGA	3 cut(s)	37, 1558, 2039
Hpy166II	GTNNAC	3 cut(s)	933, 967, 1866
Hpy188III	TCNNGA	7 cut(s)	211, 371, 946, 1336, 1856, 1877, 1910
Hpy8I	GTNNAC	3 cut(s)	933, 967, 1866
Hpy99I	CGWCG	3 cut(s)	65, 110, 559
HpyAV	CCTTC	9 cut(s)	141, 273, 539, 973, 980, 1379, 1409, 1654, 1918
HpyCH4III	ACNGT	4 cut(s)	161, 669, 743, 1117
HpyCH4V	TGCA	9 cut(s)	403, 626, 933, 1054, 1121, 1190, 1259, 1683, 1941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 526, 1130
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	322, 388, 715
KpnI	GGTACC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	450, 942
KspAI	GTTAAC	1 cut(s)	967
LmnI	GCTCC	3 cut(s)	534, 794, 1338
Lsp1109I	GCAGC	4 cut(s)	1066, 1069, 1133, 1609
LweI	GCATC	3 cut(s)	412, 1154, 2031
MaeI	CTAG	2 cut(s)	704, 1172
MaeIII	GTNAC	9 cut(s)	314, 1219, 1478, 1571, 1729, 1756, 1810, 1837, 1927
MboII	GAAGA	9 cut(s)	214, 287, 772, 781, 1387, 1559, 1652, 1669, 1933
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	73, 1067, 1518
MhlI	GDGCHC	5 cut(s)	531, 843, 935, 1039, 1469
MlsI	TGGCCA	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	3 cut(s)	1711, 1846, 1867
MmeI	TCCRAC	1 cut(s)	43
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	9 cut(s)	540, 593, 966, 1064, 1151, 1245, 1665, 1674, 2073
Msp20I	TGGCCA	1 cut(s)	292
MspA1I	CMGCKG	2 cut(s)	1049, 1124
MspCI	CTTAAG	2 cut(s)	1150, 1244
MspI	CCGG	4 cut(s)	23, 323, 504, 910
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	862
MwoI	GCNNNNNNNGC	3 cut(s)	319, 526, 1130
NlaIII	CATG	3 cut(s)	322, 388, 715
NlaIV	GGNNCC	5 cut(s)	46, 75, 172, 1129, 1520
NmeAIII	GCCGAG	1 cut(s)	1205
NmuCI	GTSAC	3 cut(s)	314, 1478, 1571
NspI	RCATGY	1 cut(s)	322
PctI	GAATGC	1 cut(s)	862
PfeI	GAWTC	5 cut(s)	96, 127, 190, 476, 1906
PflFI	GACNNNGTC	1 cut(s)	1484
PkrI	GCNGC	5 cut(s)	178, 1056, 1059, 1123, 1624
PleI	GAGTC	3 cut(s)	1711, 1846, 1867
PpsI	GAGTC	3 cut(s)	1711, 1846, 1867
PshBI	ATTAAT	1 cut(s)	1674
Psp124BI	GAGCTC	1 cut(s)	843
PspEI	GGTNACC	3 cut(s)	1756, 1810, 1837
PspFI	CCCAGC	1 cut(s)	1045
PspN4I	GGNNCC	5 cut(s)	46, 75, 172, 1129, 1520
PstNI	CAGNNNCTG	1 cut(s)	1622
PsuI	RGATCY	3 cut(s)	73, 1067, 1518
PsyI	GACNNNGTC	1 cut(s)	1484
PvuII	CAGCTG	2 cut(s)	1049, 1124
RsaI	GTAC	4 cut(s)	113, 172, 1020, 1401
RsaNI	GTAC	4 cut(s)	112, 171, 1019, 1400
SacI	GAGCTC	1 cut(s)	843
SaqAI	TTAA	9 cut(s)	540, 593, 966, 1064, 1151, 1245, 1665, 1674, 2073
SatI	GCNGC	5 cut(s)	177, 1055, 1058, 1122, 1623
SchI	GAGTC	3 cut(s)	1711, 1846, 1867
SduI	GDGCHC	5 cut(s)	531, 843, 935, 1039, 1469
SfaNI	GCATC	3 cut(s)	412, 1154, 2031
SgrAI	CRCCGGYG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	1150, 1244
SmoI	CTYRAG	2 cut(s)	1150, 1244
SsiI	CCGC	6 cut(s)	48, 174, 177, 235, 1029, 1131
SspMI	CTAG	2 cut(s)	704, 1172
SstI	GAGCTC	1 cut(s)	843
TaaI	ACNGT	4 cut(s)	161, 669, 743, 1117
TaqI	TCGA	2 cut(s)	1250, 1803
TatI	WGTACW	2 cut(s)	1018, 1399
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	5 cut(s)	96, 127, 190, 476, 1906
Tru1I	TTAA	9 cut(s)	540, 593, 966, 1064, 1151, 1245, 1665, 1674, 2073
Tru9I	TTAA	9 cut(s)	540, 593, 966, 1064, 1151, 1245, 1665, 1674, 2073
TscAI	CASTG	5 cut(s)	154, 460, 940, 1576, 1717
TseFI	GTSAC	3 cut(s)	314, 1478, 1571
TseI	GCWGC	4 cut(s)	1054, 1057, 1121, 1622
Tsp45I	GTSAC	3 cut(s)	314, 1478, 1571
TspDTI	ATGAA	7 cut(s)	296, 558, 818, 857, 939, 1398, 1560
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	5 cut(s)	154, 460, 940, 1576, 1717
Tth111I	GACNNNGTC	1 cut(s)	1484
Vha464I	CTTAAG	2 cut(s)	1150, 1244
VneI	GTGCAC	1 cut(s)	931
VspI	ATTAAT	1 cut(s)	1674
XapI	RAATTY	3 cut(s)	375, 1454, 1995
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XspI	CTAG	2 cut(s)	704, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.