Rw0G013330
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00600
OG0017314
Physical Location & Seq
Forward (+)
9681 .. 11632
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013330.1

Sequence Viewer

Length: 699 bp
ATGTCTTCCTCTGAAAAGCCTCCGGTGATCGGAATTGACATCGGCACCGCCTACTCGTCCGTCGGAGTTTGGGATCCAAACCTCGGTCGCGTGAGAATCATCGCCGACGAGTACGGCAACACTCAGATTCCTTCGGCTGAAGGTCTGGTTAGTAGTGATGTGGATGAGGTTGTACTTGTGGGCGGTTGTGCTCAAATCCCAGCTGTGCAGCAGCGATTAAGATCCTGCTTGGATGGTAAGGTTCTTGTTGAAGTAAGTAAAGTCAATGAGACTGTTGCAGCTTGGTTCCGCATATCTCGGGGCATCCTTAAGTGGGTTACTGGCTTATCCCCCAACTCTCTTAAGTCGAAAATTGCAAACAAGAAAAGGGTGCTGATTTCTAAGAATACTCCAATTCCATCAAAGAATTGCCAGATCAATGTGCCTATTATCAGGAGCGTTCTTATGCCAAATGACAGAAAAATTGTTTTGAAGATATATGAAGGGGATAACAATGTACTGGGAGAGATTGAAGGTGGAAAAGTTGAAAATACTTGCAAGTTGTTGGGGAAATTTGAGCTGAGCACTAAGGGTAGTGACCTTGTCTCTGTTATATTCAAGGCTGATACAAATGGGATCCTCAATGTGTCTGCTCAGGGAAATGAAGACAGCTATATTACAATCACCAGTGACATTAATTGGCCGATTGACTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000271 GO:0000741 GO:0000742 GO:0000746 GO:0000747 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005938 GO:0005975 GO:0005976 GO:0006073 GO:0006508 GO:0006511 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0006997 GO:0007154 GO:0007165 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009250 GO:0009272 GO:0009987 GO:0010033 GO:0010243 GO:0010383 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016051 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019941 GO:0019953 GO:0022414 GO:0023052 GO:0030163 GO:0030433 GO:0030554 GO:0030968 GO:0031090 GO:0031204 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032541 GO:0032553 GO:0032555 GO:0032559 GO:0032940 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0033692 GO:0034099 GO:0034406 GO:0034613 GO:0034620 GO:0034637 GO:0034645 GO:0034976 GO:0035639 GO:0035966 GO:0035967 GO:0036094 GO:0036498 GO:0036503 GO:0042221 GO:0042546 GO:0042886 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044262 GO:0044264 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044703 GO:0044764 GO:0045047 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051273 GO:0051274 GO:0051278 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0065002 GO:0065007 GO:0070013 GO:0070589 GO:0070592 GO:0070727 GO:0070879 GO:0070880 GO:0070887 GO:0070972 GO:0071310 GO:0071554 GO:0071702 GO:0071704 GO:0071705 GO:0071782 GO:0071806 GO:0071840 GO:0071852 GO:0071944 GO:0071966 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097038 GO:0097159 GO:0097367 GO:0098827 GO:0099020 GO:0099021 GO:0099568 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901698
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020
Pfam Domains
Protein Families
HSP70

Protein Analysis

232

Amino Acids

25.19

Weight (kDa)

7.57

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 49 - 215 1e-12 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 48, 183, 289
AclWI GGATC 5 cut(s) 68, 81, 216, 610, 623
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 3 cut(s) 113, 174, 498
AfiI CCNNNNNNNGG 3 cut(s) 29, 83, 313
AflII CTTAAG 2 cut(s) 308, 341
AgsI TTSAA 5 cut(s) 251, 472, 512, 527, 598
AluBI AGCT 4 cut(s) 203, 281, 559, 651
AluI AGCT 4 cut(s) 203, 281, 559, 651
Alw21I GWGCWC 2 cut(s) 193, 566
Alw26I GTCTC 2 cut(s) 263, 589
AlwI GGATC 5 cut(s) 68, 81, 216, 610, 623
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 208, 211, 278
ApoI RAATTY 1 cut(s) 551
AseI ATTAAT 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 37, 655
AvaI CYCGRG 1 cut(s) 297
BamHI GGATCC 2 cut(s) 73, 615
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 193, 566
BbvI GCAGC 3 cut(s) 220, 223, 290
BccI CCATC 2 cut(s) 227, 406
BceAI ACGGC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 263, 589
BfrI CTTAAG 2 cut(s) 308, 341
BisI GCNGC 3 cut(s) 209, 212, 279
BlpI GCTNAGC 1 cut(s) 560
BlsI GCNGC 3 cut(s) 210, 213, 280
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 4 cut(s) 46, 75, 287, 617
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 83, 313
Bse1I ACTGG 3 cut(s) 325, 504, 666
Bse8I GATNNNNATC 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 169, 238, 303
BseJI GATNNNNATC 1 cut(s) 220
BseLI CCNNNNNNNGG 3 cut(s) 29, 83, 313
BseMII CTCAG 3 cut(s) 137, 551, 647
BseNI ACTGG 3 cut(s) 325, 504, 666
BseXI GCAGC 3 cut(s) 220, 223, 290
BseYI CCCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 682
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 193, 566
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 29, 83, 313
BsmAI GTCTC 2 cut(s) 263, 589
BsnI GGCC 1 cut(s) 682
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 193, 566
Bsp143I GATC 5 cut(s) 27, 73, 221, 414, 615
Bsp1720I GCTNAGC 1 cut(s) 560
BspACI CCGC 3 cut(s) 48, 183, 289
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 3 cut(s) 136, 552, 646
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 4 cut(s) 46, 75, 287, 617
BspPI GGATC 5 cut(s) 68, 81, 216, 610, 623
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 2 cut(s) 308, 341
BsrI ACTGG 3 cut(s) 325, 504, 666
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 5 cut(s) 27, 73, 221, 414, 615
Bst4CI ACNGT 1 cut(s) 274
BstAFI CTTAAG 2 cut(s) 308, 341
BstDEI CTNAG 5 cut(s) 123, 381, 560, 567, 633
BstF5I GGATG 3 cut(s) 169, 238, 303
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 30, 76, 224, 417, 618
BstMAI GTCTC 2 cut(s) 263, 589
BstMBI GATC 5 cut(s) 27, 73, 221, 414, 615
BstMCI CGRYCG 1 cut(s) 88
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 220, 223, 290
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 73, 221, 615
BstYI RGATCY 3 cut(s) 73, 221, 615
BsuRI GGCC 1 cut(s) 682
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 3 cut(s) 169, 238, 303
BtsIMutI CAGTG 1 cut(s) 673
Csp6I GTAC 3 cut(s) 112, 173, 497
CviJI RGCY 9 cut(s) 19, 137, 203, 281, 324, 559, 602, 651, 682
CviKI_1 RGCY 9 cut(s) 19, 137, 203, 281, 324, 559, 602, 651, 682
CviQI GTAC 3 cut(s) 112, 173, 497
DdeI CTNAG 5 cut(s) 123, 381, 560, 567, 633
DpnI GATC 5 cut(s) 29, 75, 223, 416, 617
DpnII GATC 5 cut(s) 27, 73, 221, 414, 615
EaeI YGGCCR 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 297
FaiI YATR 6 cut(s) 293, 446, 478, 480, 593, 654
Fnu4HI GCNGC 3 cut(s) 209, 212, 279
FokI GGATG 3 cut(s) 176, 245, 290
Fsp4HI GCNGC 3 cut(s) 209, 212, 279
GluI GCNGC 3 cut(s) 209, 212, 279
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 682
HapII CCGG 1 cut(s) 23
HinfI GANTC 2 cut(s) 96, 127
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 37, 655
Hpy188I TCNGA 4 cut(s) 13, 32, 65, 126
Hpy188III TCNNGA 1 cut(s) 433
Hpy99I CGWCG 2 cut(s) 65, 110
HpyAV CCTTC 4 cut(s) 134, 141, 476, 506
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 208, 278, 356, 537
HpyF3I CTNAG 5 cut(s) 123, 381, 560, 567, 633
Kzo9I GATC 5 cut(s) 27, 73, 221, 414, 615
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 3 cut(s) 220, 223, 290
LweI GCATC 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 316, 575, 668
MalI GATC 5 cut(s) 29, 75, 223, 416, 617
MboI GATC 5 cut(s) 27, 73, 221, 414, 615
MboII GAAGA 2 cut(s) 484, 656
MflI RGATCY 3 cut(s) 73, 221, 615
MhlI GDGCHC 2 cut(s) 193, 566
MluCI AATT 7 cut(s) 33, 351, 393, 406, 462, 551, 676
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 19, 30, 92, 160, 629
MseI TTAA 4 cut(s) 218, 309, 342, 675
MspA1I CMGCKG 1 cut(s) 203
MspCI CTTAAG 2 cut(s) 308, 341
MspI CCGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 90
NdeII GATC 5 cut(s) 27, 73, 221, 414, 615
NlaIV GGNNCC 4 cut(s) 46, 75, 287, 617
NmuCI GTSAC 2 cut(s) 575, 668
PfeI GAWTC 2 cut(s) 96, 127
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 3 cut(s) 210, 213, 280
PshBI ATTAAT 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 4 cut(s) 46, 75, 287, 617
PsuI RGATCY 3 cut(s) 73, 221, 615
PsyI GACNNNGTC 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 113, 174, 498
RsaNI GTAC 3 cut(s) 112, 173, 497
SaqAI TTAA 4 cut(s) 218, 309, 342, 675
SatI GCNGC 3 cut(s) 209, 212, 279
Sau3AI GATC 5 cut(s) 27, 73, 221, 414, 615
SduI GDGCHC 2 cut(s) 193, 566
SfaNI GCATC 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 308, 341
SmoI CTYRAG 2 cut(s) 308, 341
Sse9I AATT 7 cut(s) 33, 351, 393, 406, 462, 551, 676
SsiI CCGC 3 cut(s) 48, 183, 289
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 347
TaqII GACCGA 1 cut(s) 74
TasI AATT 7 cut(s) 33, 351, 393, 406, 462, 551, 676
TatI WGTACW 2 cut(s) 172, 496
TfiI GAWTC 2 cut(s) 96, 127
Tru1I TTAA 4 cut(s) 218, 309, 342, 675
Tru9I TTAA 4 cut(s) 218, 309, 342, 675
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 2 cut(s) 575, 668
TseI GCWGC 3 cut(s) 208, 211, 278
Tsp45I GTSAC 2 cut(s) 575, 668
TspDTI ATGAA 2 cut(s) 495, 657
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 581
Vha464I CTTAAG 2 cut(s) 308, 341
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.