Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017314

Physical Location & Seq

Genomic Coordinates Forward (+)

65248410 .. 65250814

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG444000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGAAGCAATGGCCATTCAATGTGAAAGAGAAGCGTGACATGCCGGTTGTTTCTGTCAATTACAAAAACCAATGGAAACAATTTTGCTGTCAAGAAATTTCTGCCATGATTGTCTCAAAGTTGCATCAACTTGCTGAGGATGATTTAGGTTGTTGCGTGGAGGAGGCTGTGATCAGTGTGCCTGCTTTCTTTACTGCTTCACAAAGACAAGCTATGATTGACGCCGGTGCTATAGCAGGGCTGAATGTGCTCCAAATAGTTAATGAAGGAACTGCATCGGCCATAAACTATGCTGTGGAGAGGAGAGTTTCTTTAAAGAAAAGGATACTGGTTTTTGACTTGGGTGCAGGGAGTGTTGATGTTTCTATTGCTGTGCTGGAAAAGGGACTGTGTGAAATCATTGCTACTGCTGGAGATACTTGTCTAGGGGGCATGGATTTTGATAATAGAATTGTGGATTACTGTGTGGAAAAGATAAAGAAGAAATGGAAGAGGGACATAAGTGGAAACAAAGGGGCTTTGTTGATGTTGAGGAGAGGTTGTGAGAGAGCCAAGATAGAGCTCTCATCAAAGGAGAATGCCTCAATTCATTTGGAATACGATGGGATTGACTTCAAAACAGAACTCTATCGGACTATTTTTGATGAACTGTGCACTGATCTAATCAAAAAGTGTATGGAATTAGTCAACAGATGTTTGAAGGCTGAAGGTCTGGTTAGTAGTGATGTGGATGAGGTTGTACTTGTGGGCGGTTGTGCTCAAATCCCAGCTGTGCAGCAGCGATTAAGATCCTGCTTGGATGGTAAGGTTCTTGTTGAAGTAAAGTCAAATGAGACTGTTGCAGCTGGTTCCACATATCTCGGGGCATCCTTAAGTGGTGTGTTCAATGATCTAGTTTGCCGAGATGTTGCAAACTTGTCATTTACCTGTGAATATAGGGTTACTGGCTTATCCCCCAACTCTCTTAAGTCGAAAATTGCAAACAAGAAAAGGGTGCTGATTTCTAAGAATACTCCAATTCCATCAAAGAATTGCCAGATCAATGTGCCTATTGTCAGGAGCGTTCTTATGCCAAATGACAGAAAAATTGTTTTGAAGATATATGAAGGGGATAACAATGTACTGGGAGAGATTGAAGGTGGAAAAGTTGAAAATACTTACAAGTTGTTGGGGAAATTTGAGCTGAGCACTAAGGGTAGTGACCTTGTCTCTGTTATATTCAAGGCTGATACAAATGGGATCCTCAATGTGTCTGCTCAGGGCAATGAAGACAGCTGTATTCCAATCACCAGTGACATTGGCCGATTGAGTACTACTGAAATTAGTAAAATGACTTCAGAAGCTGCTATATACAAGTCAGAGGATGAGGAGATTTGGAAGAAGGTTAAGAGCATTAATCTATGCAGGAATGTAATCCAGGGGACTGATATCACTGAGACTTCTAAGAATGTTACTGAGACTTTGGAGGAGGTTACTGAGACTGAGACTTTGGAGGAGGTTTCTGAGATTTTGGAGGTTACTGAGACTTTGGAAGAGGTTACTGATATTTTTGATGAGGTTGCTGATACTTTGAAGAAGGTTTCTGATACTGTCAAGGGTATTCTTGCCTCTGACACTTCGAAAAAGATTGGCAATGCTCTGAAGCAAATGTGCTTGTACTTGCTTGGCATGGGCATCGGTAAAAAAATATGCTGCTTTGTGGTTATTATTATAATTATAGTTATAACTCGGCGGATAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

580

Amino Acids

63.81

Weight (kDa)

5.45

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 528	4.6e-105	Hsp70 protein
MreB_Mbl	PF06723	36 - 286	3.6e-11	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33871 FvH4_7g32180
rosa_multiflora	Rmu_co8396995.1_g000001 Rmu_sc0008418.1_g000007 Rmu_sc0010238.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278440
rosa_rugosa	Rorug01G0431100 Rorug01G0431200
rosa_samantha	Rh1BG411800 Rh1CG426200 Rh1DG444000
rosa_wichuraiana	Rw0G013330 Rw1G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1712, 1724
AciI	CCGC	2 cut(s)	750, 1732
AclWI	GGATC	3 cut(s)	783, 1234, 1247
AcoI	YGGCCR	3 cut(s)	11, 279, 1300
AcsI	RAATTY	2 cut(s)	96, 1175
AcuI	CTGAAG	3 cut(s)	726, 1320, 1661
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	4 cut(s)	741, 1122, 1312, 1658
AflII	CTTAAG	2 cut(s)	871, 965
AjnI	CCWGG	1 cut(s)	1416
AluBI	AGCT	7 cut(s)	212, 562, 770, 845, 1183, 1275, 1343
AluI	AGCT	7 cut(s)	212, 562, 770, 845, 1183, 1275, 1343
Alw21I	GWGCWC	5 cut(s)	252, 564, 656, 760, 1190
Alw26I	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1472, 1478, 1517
Alw44I	GTGCAC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	783, 1234, 1247
AlwNI	CAGNNNCTG	1 cut(s)	1343
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	11, 279, 1300
ApaLI	GTGCAC	1 cut(s)	652
ApeKI	GCWGC	5 cut(s)	775, 778, 842, 1343, 1692
ApoI	RAATTY	2 cut(s)	96, 1175
ArsI	GACNNNNNNTTYG	2 cut(s)	1471, 1503
AseI	ATTAAT	1 cut(s)	1395
AsuHPI	GGTGA	1 cut(s)	1279
AsuII	TTCGAA	1 cut(s)	1619
AvaI	CYCGRG	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	1239
BanII	GRGCYC	1 cut(s)	564
BarI	GAAGNNNNNNTAC	2 cut(s)	1318, 1350
BbsI	GAAGAC	1 cut(s)	1275
Bbv12I	GWGCWC	5 cut(s)	252, 564, 656, 760, 1190
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	5 cut(s)	787, 790, 854, 1330, 1679
BccI	CCATC	3 cut(s)	596, 794, 1030
BcgI	CGANNNNNNTGC	2 cut(s)	1657, 1691
BciT130I	CCWGG	1 cut(s)	1418
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1472, 1478, 1517
BfaI	CTAG	2 cut(s)	425, 893
BfmI	CTRYAG	1 cut(s)	231
BfrI	CTTAAG	2 cut(s)	871, 965
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1693
BlpI	GCTNAGC	1 cut(s)	1184
BlsI	GCNGC	5 cut(s)	777, 780, 844, 1345, 1694
BmcAI	AGTACT	1 cut(s)	1312
Bme1390I	CCNGG	1 cut(s)	1418
BmeT110I	CYCGRG	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	850, 1241
BmrFI	CCNGG	1 cut(s)	1418
BmrI	ACTGGG	1 cut(s)	1133
BmsI	GCATC	4 cut(s)	133, 284, 875, 1683
BmuI	ACTGGG	1 cut(s)	1133
BpiI	GAAGAC	1 cut(s)	1275
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	135, 1257
Bpu1102I	GCTNAGC	1 cut(s)	1184
Bpu14I	TTCGAA	1 cut(s)	1619
BsaBI	GATNNNNATC	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	1417
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse118I	RCCGGY	2 cut(s)	43, 224
Bse1I	ACTGG	4 cut(s)	333, 949, 1128, 1290
Bse3DI	GCAATG	4 cut(s)	14, 399, 1270, 1639
Bse8I	GATNNNNATC	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	1418
BseDI	CCNNGG	1 cut(s)	1417
BseGI	GGATG	5 cut(s)	145, 736, 805, 866, 1369
BseJI	GATNNNNATC	1 cut(s)	787
BseMI	GCAATG	4 cut(s)	14, 399, 1270, 1639
BseMII	CTCAG	9 cut(s)	126, 1175, 1271, 1425, 1446, 1467, 1473, 1494, 1512
BseNI	ACTGG	4 cut(s)	333, 949, 1128, 1290
BseRI	GAGGAG	6 cut(s)	176, 316, 547, 1382, 1481, 1508
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	5 cut(s)	787, 790, 854, 1330, 1679
BseYI	CCCAGC	1 cut(s)	766
BsgI	GTGCAG	2 cut(s)	366, 794
BshFI	GGCC	3 cut(s)	13, 281, 1302
BsiHKAI	GWGCWC	5 cut(s)	252, 564, 656, 760, 1190
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	2 cut(s)	44, 225
BslFI	GGGAC	3 cut(s)	399, 509, 1435
BsmAI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1472, 1478, 1517
BsmFI	GGGAC	3 cut(s)	399, 509, 1435
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	13, 281, 1302
BsoBI	CYCGRG	1 cut(s)	860
Bsp119I	TTCGAA	1 cut(s)	1619
Bsp1286I	GDGCHC	5 cut(s)	252, 564, 656, 760, 1190
Bsp143I	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
Bsp1720I	GCTNAGC	1 cut(s)	1184
BspACI	CCGC	2 cut(s)	750, 1732
BspANI	GGCC	3 cut(s)	13, 281, 1302
BspCNI	CTCAG	9 cut(s)	127, 1176, 1270, 1426, 1447, 1468, 1474, 1495, 1513
BspLI	GGNNCC	2 cut(s)	850, 1241
BspPI	GGATC	3 cut(s)	783, 1234, 1247
BspT104I	TTCGAA	1 cut(s)	1619
BspTI	CTTAAG	2 cut(s)	871, 965
BsrDI	GCAATG	4 cut(s)	14, 399, 1270, 1639
BsrFI	RCCGGY	2 cut(s)	43, 224
BsrI	ACTGG	4 cut(s)	333, 949, 1128, 1290
BssAI	RCCGGY	2 cut(s)	43, 224
BssECI	CCNNGG	1 cut(s)	1417
BssMI	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	1418
Bst4CI	ACNGT	5 cut(s)	390, 464, 651, 838, 1591
Bst6I	CTCTTC	2 cut(s)	485, 1527
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	2 cut(s)	871, 965
BstBI	TTCGAA	1 cut(s)	1619
BstC8I	GCNNGC	1 cut(s)	183
BstF5I	GGATG	5 cut(s)	145, 736, 805, 866, 1369
BstKTI	GATC	6 cut(s)	174, 661, 791, 892, 1041, 1242
BstMAI	GTCTC	8 cut(s)	118, 827, 1213, 1430, 1451, 1472, 1478, 1517
BstMBI	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 247
BstNI	CCWGG	1 cut(s)	1418
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	1416
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	5 cut(s)	787, 790, 854, 1330, 1679
BstV2I	GAAGAC	1 cut(s)	1275
BstX2I	RGATCY	2 cut(s)	788, 1239
BstYI	RGATCY	2 cut(s)	788, 1239
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	13, 281, 1302
BtsCI	GGATG	5 cut(s)	145, 736, 805, 866, 1369
BtsIMutI	CAGTG	4 cut(s)	181, 654, 1297, 1431
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	1343
Cfr10I	RCCGGY	2 cut(s)	43, 224
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	4 cut(s)	740, 1121, 1311, 1657
CviAII	CATG	4 cut(s)	40, 106, 433, 1669
CviQI	GTAC	4 cut(s)	740, 1121, 1311, 1657
DpnI	GATC	6 cut(s)	173, 660, 790, 891, 1040, 1241
DpnII	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	3 cut(s)	11, 279, 1300
Eam1104I	CTCTTC	2 cut(s)	485, 1527
EarI	CTCTTC	2 cut(s)	485, 1527
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	1429
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	3 cut(s)	726, 1320, 1661
Eco88I	CYCGRG	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	1416
EcoRV	GATATC	1 cut(s)	1429
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	4 cut(s)	43, 109, 436, 1672
FaqI	GGGAC	3 cut(s)	399, 509, 1435
FatI	CATG	4 cut(s)	39, 105, 432, 1668
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1693
FokI	GGATG	5 cut(s)	152, 743, 812, 853, 1376
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1693
FspBI	CTAG	2 cut(s)	425, 893
GluI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1693
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	13, 281, 1302
HapII	CCGG	2 cut(s)	44, 225
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	43, 109, 436, 1672
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	44, 225
HphI	GGTGA	1 cut(s)	1279
Hpy166II	GTNNAC	2 cut(s)	654, 688
Hpy188I	TCNGA	7 cut(s)	633, 1339, 1360, 1504, 1585, 1612, 1641
Hpy188III	TCNNGA	2 cut(s)	92, 1057
Hpy8I	GTNNAC	2 cut(s)	654, 688
HpyAV	CCTTC	7 cut(s)	260, 694, 701, 1100, 1130, 1375, 1570
HpyCH4III	ACNGT	5 cut(s)	390, 464, 651, 838, 1591
HpyCH4V	TGCA	9 cut(s)	124, 275, 347, 654, 775, 842, 911, 980, 1404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 247
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	43, 109, 436, 1672
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
LmnI	GCTCC	2 cut(s)	255, 1059
Lsp1109I	GCAGC	5 cut(s)	787, 790, 854, 1330, 1679
LweI	GCATC	4 cut(s)	133, 284, 875, 1683
MaeI	CTAG	2 cut(s)	425, 893
MaeIII	GTNAC	8 cut(s)	35, 940, 1199, 1292, 1450, 1471, 1516, 1537
MalI	GATC	6 cut(s)	173, 660, 790, 891, 1040, 1241
MboI	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
MboII	GAAGA	7 cut(s)	493, 502, 1108, 1280, 1390, 1544, 1585
MflI	RGATCY	2 cut(s)	788, 1239
MhlI	GDGCHC	5 cut(s)	252, 564, 656, 760, 1190
MlsI	TGGCCA	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	7 cut(s)	261, 314, 785, 872, 966, 1386, 1395
Msp20I	TGGCCA	1 cut(s)	13
MspA1I	CMGCKG	3 cut(s)	770, 845, 1275
MspCI	CTTAAG	2 cut(s)	871, 965
MspI	CCGG	2 cut(s)	44, 225
MspR9I	CCNGG	1 cut(s)	1418
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	1418
MwoI	GCNNNNNNNGC	2 cut(s)	40, 247
NdeII	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
NlaIII	CATG	4 cut(s)	43, 109, 436, 1672
NlaIV	GGNNCC	2 cut(s)	850, 1241
NmeAIII	GCCGAG	2 cut(s)	926, 1708
NmuCI	GTSAC	3 cut(s)	35, 1199, 1292
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	1619
PctI	GAATGC	1 cut(s)	583
PflFI	GACNNNGTC	1 cut(s)	1205
PkrI	GCNGC	5 cut(s)	777, 780, 844, 1345, 1694
PshBI	ATTAAT	1 cut(s)	1395
PsiI	TTATAA	2 cut(s)	1712, 1724
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	1416
PspN4I	GGNNCC	2 cut(s)	850, 1241
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	2 cut(s)	788, 1239
PsyI	GACNNNGTC	1 cut(s)	1205
PvuII	CAGCTG	3 cut(s)	770, 845, 1275
RsaI	GTAC	4 cut(s)	741, 1122, 1312, 1658
RsaNI	GTAC	4 cut(s)	740, 1121, 1311, 1657
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	7 cut(s)	261, 314, 785, 872, 966, 1386, 1395
SatI	GCNGC	5 cut(s)	776, 779, 843, 1344, 1693
Sau3AI	GATC	6 cut(s)	171, 658, 788, 889, 1038, 1239
ScaI	AGTACT	1 cut(s)	1312
ScrFI	CCNGG	1 cut(s)	1418
SduI	GDGCHC	5 cut(s)	252, 564, 656, 760, 1190
SfaNI	GCATC	4 cut(s)	133, 284, 875, 1683
SfcI	CTRYAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1619
SgrAI	CRCCGGYG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	871, 965
SmoI	CTYRAG	2 cut(s)	871, 965
SsiI	CCGC	2 cut(s)	750, 1732
SspMI	CTAG	2 cut(s)	425, 893
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	1416
TaaI	ACNGT	5 cut(s)	390, 464, 651, 838, 1591
TaqI	TCGA	2 cut(s)	971, 1619
TatI	WGTACW	4 cut(s)	739, 1120, 1310, 1656
Tru1I	TTAA	7 cut(s)	261, 314, 785, 872, 966, 1386, 1395
Tru9I	TTAA	7 cut(s)	261, 314, 785, 872, 966, 1386, 1395
TscAI	CASTG	4 cut(s)	181, 661, 1297, 1438
TseFI	GTSAC	3 cut(s)	35, 1199, 1292
TseI	GCWGC	5 cut(s)	775, 778, 842, 1343, 1692
Tsp45I	GTSAC	3 cut(s)	35, 1199, 1292
TspDTI	ATGAA	6 cut(s)	17, 279, 578, 660, 1119, 1281
TspRI	CASTG	4 cut(s)	181, 661, 1297, 1438
Tth111I	GACNNNGTC	1 cut(s)	1205
Vha464I	CTTAAG	2 cut(s)	871, 965
VneI	GTGCAC	1 cut(s)	652
VspI	ATTAAT	1 cut(s)	1395
XapI	RAATTY	2 cut(s)	96, 1175
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	425, 893
ZrmI	AGTACT	1 cut(s)	1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.