Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409009.1

Orthogroup ID

OG0017310

Physical Location & Seq

Genomic Coordinates Forward (+)

148 .. 915

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409009.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggtgattgatactgagccaggttcacagaagaagaagagaagatacctaatttatgacatgatggcaatcaacaaccgtcctgtggtaaaattgccctttcatgagcggtggaagatgattgaggaagaagtaattcagcctcggaatgagcagcgtcgactttaccaaagtaggaataatcccaactacagatatgacttggaaccattcacggtgaggaggaagggcttttggttgctctctacggttgaaaagcttctgaaggacttcattccaaagctttcacatgatgcagatggtgttatctttcagggttgggatgatccatacgttcagggagctgatgaaggccttctaaagtggaaatatcctgctatgaactctattgattttctatttgaggtaagtggtgatggccggcaacagctttttctgtatgaacaaagaaagaagaaactaatggaaggatataggattacgtttagggatagtgtggaatctttttattccggaaaaataatagagtgttcttgggattctgagacaaaagaatgggtctatatgcggactaggactgataaatcggctccaaatgacatcaatacccacgacaagataatgcaaagcataaaggacaatatcacagaggacgtcttgctaaatgagatatacaagaccattcgtctgcctatatatgttcatagaatacagaaagatagcaaagcaacagagaaacatgcaagttcagcaaggactgcaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

255

Amino Acids

30.46

Weight (kDa)

9.14

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017310)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25120
rosa_chinensis	RchiOBHm_Chr7g0215321
rosa_laevigata	RLG00000002670
rosa_multiflora	Rmu_co8409009.1_g000001 Rmu_sc0021837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244280
rosa_rugosa	Rorug07G0152100
rosa_samantha	Rh7AG288900 Rh7BG280900 Rh7CG308700 Rh7DG292500
rosa_wichuraiana	Rw7G024700 Rw7G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	657
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	2 cut(s)	109, 568
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	654
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	684
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	4 cut(s)	259, 283, 344, 430
AluI	AGCT	4 cut(s)	259, 283, 344, 430
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	2 cut(s)	352, 418
ApeKI	GCWGC	1 cut(s)	154
Asp700I	GAANNNNTTC	4 cut(s)	135, 258, 269, 354
AsuHPI	GGTGA	3 cut(s)	16, 229, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	29, 61
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	58, 293, 410
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	21
BmeRI	GACNNNNNGTC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	207, 591
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	6, 534
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	354, 420
BsiSI	CCGG	2 cut(s)	421, 513
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	354, 420
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	109, 568
BspANI	GGCC	2 cut(s)	354, 420
BspCNI	CTCAG	2 cut(s)	7, 535
BspEI	TCCGGA	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	207, 591
BspPI	GGATC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	80, 217, 250
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	15, 543
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	749, 758
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	354, 420
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	420
CseI	GACGC	1 cut(s)	146
CviAII	CATG	4 cut(s)	61, 104, 290, 740
DdeI	CTNAG	2 cut(s)	15, 543
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	4 cut(s)	64, 107, 293, 743
FatI	CATG	4 cut(s)	60, 103, 289, 739
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	354, 420
HapII	CCGG	2 cut(s)	421, 513
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	4 cut(s)	64, 107, 293, 743
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	2 cut(s)	257, 281
HinfI	GANTC	2 cut(s)	500, 539
HpaII	CCGG	2 cut(s)	421, 513
HphI	GGTGA	3 cut(s)	16, 229, 425
Hpy166II	GTNNAC	2 cut(s)	26, 161
Hpy188I	TCNGA	3 cut(s)	147, 264, 544
Hpy188III	TCNNGA	2 cut(s)	104, 513
Hpy8I	GTNNAC	2 cut(s)	26, 161
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	5 cut(s)	220, 259, 344, 365, 461
HpyCH4III	ACNGT	3 cut(s)	80, 217, 250
HpyCH4IV	ACGT	3 cut(s)	333, 482, 654
HpyCH4V	TGCA	4 cut(s)	296, 625, 743, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	749, 758
HpyF3I	CTNAG	2 cut(s)	15, 543
HpySE526I	ACGT	3 cut(s)	333, 482, 654
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	64, 107, 293, 743
Kpn2I	TCCGGA	1 cut(s)	512
KroI	GCCGGC	1 cut(s)	420
KroNI	GCCGGC	1 cut(s)	422
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	341, 595
LpnPI	CCDG	8 cut(s)	6, 33, 96, 299, 323, 387, 434, 526
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	3 cut(s)	333, 482, 654
MalI	GATC	1 cut(s)	327
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	325
MboII	GAAGA	7 cut(s)	43, 46, 49, 54, 127, 140, 466
MluCI	AATT	3 cut(s)	51, 92, 135
MnlI	CCTC	6 cut(s)	118, 153, 213, 216, 397, 643
MroI	TCCGGA	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	420
MroXI	GAANNNNTTC	4 cut(s)	135, 258, 269, 354
MspI	CCGG	2 cut(s)	421, 513
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	749, 758
NaeI	GCCGGC	1 cut(s)	422
NdeII	GATC	1 cut(s)	325
NgoMIV	GCCGGC	1 cut(s)	420
NlaIII	CATG	4 cut(s)	64, 107, 293, 743
NlaIV	GGNNCC	2 cut(s)	207, 591
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	422
PdmI	GAANNNNTTC	4 cut(s)	135, 258, 269, 354
PfeI	GAWTC	2 cut(s)	500, 539
PkrI	GCNGC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	207, 591
SalI	GTCGAC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	51, 92, 135
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	2 cut(s)	109, 568
SspMI	CTAG	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	80, 217, 250
TaiI	ACGT	3 cut(s)	336, 485, 657
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	51, 92, 135
TfiI	GAWTC	2 cut(s)	500, 539
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	92, 262, 363, 395, 456, 692
XceI	RCATGY	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	4 cut(s)	135, 258, 269, 354
XspI	CTAG	1 cut(s)	573
ZraI	GACGTC	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.