Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021837.1

Orthogroup ID

OG0017310

Physical Location & Seq

Genomic Coordinates Forward (+)

8857 .. 10212

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgcatacagtcactgaagcaatacaaacatttgctaaagcgcgccatccgggaatatataaacccgactacattgatgctctatactcattctaccatgaaaggaagcctgcagaaattgtttgcccgcctactccagattggaagaggtcttcagaatttgttccagacgacgacgacgatcatcaaggtttagcaggtcctttgcatgaggatatggatacagatataatgacaaatgatgatatcttgggtgatgagatacctcctgagcagcaagaggagatgcggctgttctgctgccaaagtcttaatacgcgttgtaagaatataagctcggcattcccagggtcacacccagtttctcttagcagagaaaagctacagctgttgaagcagaggtattattatgctacatggaaagctgatggaacacgatatatgatgttaattactaaggacgggtgttacttgattgatagaaaattcaattttaggagagttcaaatgaggtttccttgcaaacacacaaatggtttagctgagaatggtactagtactcaccactatacgttactagacggggagatggtgattgatactgagccaggttcacagaagaagaagagaagatacctaatttatgacatgatggcaatcaacaaccgtcctgtggtaaaattgccctttcatgagcggtggaagatgattgaggaagaagtaattcagcctcggaatgagcagcgtcgactttaccaaagtaggaataatcccaactacagatatgacttggaaccattcacggtgaggaggaagggcttttggttgctctctacggttgaaaagcttctgaaggacttcattccaaagctttcacatgatgcagatggtgttatctttcagggttgggatgatccatacgttcagggagctgatgaaggccttctaaagtggaaatatcctgctatgaactctattgattttctatttgaggtaagtggtgatggccggcaacagctttttctgtatgaacaaagaaagaagaaactaatggaaggatataggattacgtttagggatagtgtggaatctttttattccggaaaaataatagagtgttcttgggattctgagacaaaagaatgggtctatatgcggactaggactgataaatcggctccaaatgacatcaatacccacgacaagataatgcaaagcataaaggacaatatcacagaggacgtcttgctaaatgagatatacaagaccattcgtctgcctatatatgttcatagaatacagaaagatagcaaagcaacagagaaacatgcaagttcagcaaggactgcaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

451

Amino Acids

53.18

Weight (kDa)

6.93

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017310)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25120
rosa_chinensis	RchiOBHm_Chr7g0215321
rosa_laevigata	RLG00000002670
rosa_multiflora	Rmu_co8409009.1_g000001 Rmu_sc0021837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244280
rosa_rugosa	Rorug07G0152100
rosa_samantha	Rh7AG288900 Rh7BG280900 Rh7CG308700 Rh7DG292500
rosa_wichuraiana	Rw7G024700 Rw7G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1245
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	697
AccI	GTMKAC	1 cut(s)	748
AccII	CGCG	2 cut(s)	43, 319
AccIII	TCCGGA	1 cut(s)	1100
AciI	CCGC	4 cut(s)	128, 289, 697, 1156
AclWI	GGATC	1 cut(s)	908
AcoI	YGGCCR	1 cut(s)	1006
AcsI	RAATTY	2 cut(s)	158, 485
AcuI	CTGAAG	3 cut(s)	36, 138, 872
AcyI	GRCGYC	1 cut(s)	1242
AfaI	GTAC	2 cut(s)	553, 559
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	394, 490, 506, 842
AhdI	GACNNNNNGTC	1 cut(s)	1272
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	346, 607
AluBI	AGCT	9 cut(s)	336, 382, 388, 425, 542, 847, 871, 932, 1018
AluI	AGCT	9 cut(s)	336, 382, 388, 425, 542, 847, 871, 932, 1018
Alw26I	GTCTC	1 cut(s)	1127
AlwI	GGATC	1 cut(s)	908
AlwNI	CAGNNNCTG	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	1100
AoxI	GGCC	2 cut(s)	940, 1006
ApeKI	GCWGC	3 cut(s)	274, 300, 742
ApoI	RAATTY	2 cut(s)	158, 485
Asp700I	GAANNNNTTC	5 cut(s)	162, 723, 846, 857, 942
AspLEI	GCGC	2 cut(s)	43, 45
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	5 cut(s)	266, 554, 604, 817, 1013
AvaII	GGWCC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	286, 287, 754
BccI	CCATC	6 cut(s)	54, 422, 583, 646, 881, 998
BciT130I	CCWGG	2 cut(s)	348, 609
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	1127
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	3 cut(s)	555, 578, 1161
BfmI	CTRYAG	3 cut(s)	111, 383, 778
BfuAI	ACCTGC	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	4 cut(s)	275, 290, 301, 743
BlsI	GCNGC	4 cut(s)	276, 291, 302, 744
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	51, 348, 609
Bme18I	GGWCC	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	1272
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	795, 1179
BmrFI	CCNGG	3 cut(s)	51, 348, 609
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	3 cut(s)	67, 276, 871
BmuI	ACTGGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	656
BsaHI	GRCGYC	1 cut(s)	1242
BsaJI	CCNNGG	3 cut(s)	346, 347, 731
BsaWI	WCCGGW	1 cut(s)	1100
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse118I	RCCGGY	1 cut(s)	1008
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	656
BseAI	TCCGGA	1 cut(s)	1100
BseBI	CCWGG	2 cut(s)	348, 609
BseDI	CCNNGG	3 cut(s)	346, 347, 731
BseGI	GGATG	2 cut(s)	46, 916
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMII	CTCAG	4 cut(s)	261, 534, 594, 1122
BseNI	ACTGG	1 cut(s)	359
BsePI	GCGCGC	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	296, 823
BseXI	GCAGC	3 cut(s)	286, 287, 754
Bsh1236I	CGCG	2 cut(s)	43, 319
BshFI	GGCC	2 cut(s)	942, 1008
BsiSI	CCGG	3 cut(s)	50, 1009, 1101
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmAI	GTCTC	1 cut(s)	1127
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	942, 1008
Bsp13I	TCCGGA	1 cut(s)	1100
Bsp143I	GATC	2 cut(s)	181, 913
BspACI	CCGC	4 cut(s)	128, 289, 697, 1156
BspANI	GGCC	2 cut(s)	942, 1008
BspCNI	CTCAG	4 cut(s)	262, 535, 595, 1123
BspEI	TCCGGA	1 cut(s)	1100
BspFNI	CGCG	2 cut(s)	43, 319
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	795, 1179
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	908
BsrBI	CCGCTC	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	1008
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	1008
BssECI	CCNNGG	3 cut(s)	346, 347, 731
BssHII	GCGCGC	1 cut(s)	41
BssMI	GATC	2 cut(s)	181, 913
BssNI	GRCGYC	1 cut(s)	1242
Bst2UI	CCWGG	2 cut(s)	348, 609
Bst4CI	ACNGT	4 cut(s)	10, 668, 805, 838
Bst6I	CTCTTC	2 cut(s)	140, 620
BstACI	GRCGYC	1 cut(s)	1242
BstAPI	GCANNNNNTGC	1 cut(s)	1346
BstC8I	GCNNGC	4 cut(s)	43, 111, 128, 1010
BstDEI	CTNAG	6 cut(s)	270, 368, 456, 543, 603, 1131
BstF5I	GGATG	2 cut(s)	46, 916
BstFNI	CGCG	2 cut(s)	43, 319
BstHHI	GCGC	2 cut(s)	43, 45
BstKTI	GATC	2 cut(s)	184, 916
BstMAI	GTCTC	1 cut(s)	1127
BstMBI	GATC	2 cut(s)	181, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 1337, 1346
BstNI	CCWGG	2 cut(s)	348, 609
BstNSI	RCATGY	1 cut(s)	1331
BstSCI	CCNGG	3 cut(s)	49, 346, 607
BstSFI	CTRYAG	3 cut(s)	111, 383, 778
BstUI	CGCG	2 cut(s)	43, 319
BstV1I	GCAGC	3 cut(s)	286, 287, 754
BstV2I	GAAGAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	942, 1008
BtsCI	GGATG	2 cut(s)	46, 916
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	43, 111, 128, 1010
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	2 cut(s)	43, 45
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	552, 558
CviAII	CATG	7 cut(s)	98, 209, 417, 649, 692, 878, 1328
CviQI	GTAC	2 cut(s)	552, 558
DdeI	CTNAG	6 cut(s)	270, 368, 456, 543, 603, 1131
DpnI	GATC	2 cut(s)	183, 915
DpnII	GATC	2 cut(s)	181, 913
DriI	GACNNNNNGTC	1 cut(s)	1272
EaeI	YGGCCR	1 cut(s)	1006
Eam1104I	CTCTTC	2 cut(s)	140, 620
Eam1105I	GACNNNNNGTC	1 cut(s)	1272
EarI	CTCTTC	2 cut(s)	140, 620
Eco147I	AGGCCT	1 cut(s)	942
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	36, 138, 872
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	346, 607
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	7 cut(s)	101, 212, 420, 652, 695, 881, 1331
FatI	CATG	7 cut(s)	97, 208, 416, 648, 691, 877, 1327
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	4 cut(s)	275, 290, 301, 743
FokI	GGATG	2 cut(s)	33, 923
Fsp4HI	GCNGC	4 cut(s)	275, 290, 301, 743
FspBI	CTAG	3 cut(s)	555, 578, 1161
GlaI	GCGC	2 cut(s)	42, 44
GluI	GCNGC	4 cut(s)	275, 290, 301, 743
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	942, 1008
HapII	CCGG	3 cut(s)	50, 1009, 1101
HgaI	GACGC	1 cut(s)	734
HhaI	GCGC	2 cut(s)	43, 45
Hin1I	GRCGYC	1 cut(s)	1242
Hin1II	CATG	7 cut(s)	101, 212, 420, 652, 695, 881, 1331
Hin6I	GCGC	2 cut(s)	41, 43
HinP1I	GCGC	2 cut(s)	41, 43
HincII	GTYRAC	1 cut(s)	749
HindII	GTYRAC	1 cut(s)	749
HindIII	AAGCTT	2 cut(s)	845, 869
HinfI	GANTC	2 cut(s)	1088, 1127
HpaII	CCGG	3 cut(s)	50, 1009, 1101
HphI	GGTGA	5 cut(s)	266, 554, 604, 817, 1013
Hpy166II	GTNNAC	2 cut(s)	614, 749
Hpy188I	TCNGA	4 cut(s)	157, 735, 852, 1132
Hpy188III	TCNNGA	5 cut(s)	137, 167, 269, 692, 1101
Hpy8I	GTNNAC	2 cut(s)	614, 749
Hpy99I	CGWCG	4 cut(s)	176, 179, 182, 750
HpyAV	CCTTC	5 cut(s)	808, 847, 932, 953, 1049
HpyCH4III	ACNGT	4 cut(s)	10, 668, 805, 838
HpyCH4IV	ACGT	4 cut(s)	572, 921, 1070, 1242
HpyCH4V	TGCA	8 cut(s)	4, 113, 208, 522, 884, 1213, 1331, 1349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 1337, 1346
HpyF3I	CTNAG	6 cut(s)	270, 368, 456, 543, 603, 1131
HpySE526I	ACGT	4 cut(s)	572, 921, 1070, 1242
Hsp92I	GRCGYC	1 cut(s)	1242
Hsp92II	CATG	7 cut(s)	101, 212, 420, 652, 695, 881, 1331
HspAI	GCGC	2 cut(s)	41, 43
Kpn2I	TCCGGA	1 cut(s)	1100
KroI	GCCGGC	1 cut(s)	1008
KroNI	GCCGGC	1 cut(s)	1010
Kzo9I	GATC	2 cut(s)	181, 913
LmnI	GCTCC	2 cut(s)	929, 1183
Lsp1109I	GCAGC	3 cut(s)	286, 287, 754
LweI	GCATC	3 cut(s)	67, 276, 871
MaeI	CTAG	3 cut(s)	555, 578, 1161
MaeII	ACGT	4 cut(s)	572, 921, 1070, 1242
MaeIII	GTNAC	4 cut(s)	10, 351, 467, 573
MalI	GATC	2 cut(s)	183, 915
MbiI	CCGCTC	1 cut(s)	697
MboI	GATC	2 cut(s)	181, 913
MboII	GAAGA	9 cut(s)	144, 157, 631, 634, 637, 642, 715, 728, 1054
MluCI	AATT	8 cut(s)	117, 158, 450, 485, 490, 639, 680, 723
MluI	ACGCGT	1 cut(s)	317
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	1100
MroNI	GCCGGC	1 cut(s)	1008
MroXI	GAANNNNTTC	5 cut(s)	162, 723, 846, 857, 942
MseI	TTAA	2 cut(s)	312, 449
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	50, 1009, 1101
MspR9I	CCNGG	3 cut(s)	51, 348, 609
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	348, 609
MvnI	CGCG	2 cut(s)	43, 319
MwoI	GCNNNNNNNGC	3 cut(s)	394, 1337, 1346
NaeI	GCCGGC	1 cut(s)	1010
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	181, 913
NgoMIV	GCCGGC	1 cut(s)	1008
NlaIII	CATG	7 cut(s)	101, 212, 420, 652, 695, 881, 1331
NlaIV	GGNNCC	2 cut(s)	795, 1179
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	10, 351
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1331
PagI	TCATGA	1 cut(s)	691
PasI	CCCWGGG	1 cut(s)	347
PauI	GCGCGC	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	341
PdiI	GCCGGC	1 cut(s)	1010
PdmI	GAANNNNTTC	5 cut(s)	162, 723, 846, 857, 942
PfeI	GAWTC	2 cut(s)	1088, 1127
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	276, 291, 302, 744
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	346, 607
PspGI	CCWGG	2 cut(s)	346, 607
PspN4I	GGNNCC	2 cut(s)	795, 1179
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	14
PteI	GCGCGC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	553, 559
RsaNI	GTAC	2 cut(s)	552, 558
RseI	CAYNNNNRTG	1 cut(s)	531
SalI	GTCGAC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	312, 449
SatI	GCNGC	4 cut(s)	275, 290, 301, 743
Sau3AI	GATC	2 cut(s)	181, 913
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	559
ScrFI	CCNGG	3 cut(s)	51, 348, 609
SfaNI	GCATC	3 cut(s)	67, 276, 871
SfcI	CTRYAG	3 cut(s)	111, 383, 778
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	531
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	8 cut(s)	117, 158, 450, 485, 490, 639, 680, 723
SseBI	AGGCCT	1 cut(s)	942
SsiI	CCGC	4 cut(s)	128, 289, 697, 1156
SspMI	CTAG	3 cut(s)	555, 578, 1161
StuI	AGGCCT	1 cut(s)	942
StyD4I	CCNGG	3 cut(s)	49, 346, 607
TaaI	ACNGT	4 cut(s)	10, 668, 805, 838
TaiI	ACGT	4 cut(s)	575, 924, 1073, 1245
TaqI	TCGA	1 cut(s)	748
TasI	AATT	8 cut(s)	117, 158, 450, 485, 490, 639, 680, 723
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	1088, 1127
Tru1I	TTAA	2 cut(s)	312, 449
Tru9I	TTAA	2 cut(s)	312, 449
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	10, 351
TseI	GCWGC	3 cut(s)	274, 300, 742
Tsp45I	GTSAC	2 cut(s)	10, 351
TspDTI	ATGAA	7 cut(s)	114, 680, 850, 951, 983, 1044, 1280
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	158, 485
XceI	RCATGY	1 cut(s)	1331
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	5 cut(s)	162, 723, 846, 857, 942
XspI	CTAG	3 cut(s)	555, 578, 1161
ZraI	GACGTC	1 cut(s)	1243
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.