Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017310

Physical Location & Seq

Genomic Coordinates Reverse (-)

12072606 .. 12074841

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGGATGAGCATAAGGAGGAAGTGAGGGCGGAGTCGTTGGTGGAGAAGATCGAGGAGAAGATCCATGGCCACCACGATTCGCCGGCGCCGGAAGTCGTGCGCGAGAAGAGCGGCGGCGTTTCGCCGAGTTCGATGAAGGACAAGGTTTACAGGATCTTCGGCAGGGAAAAGCCTGTGCATCATGTCATTGGTGGTGGAAAGTTGGCTGATGTTTTCCTGTGGAGGGATAAGAAGCTGTCGGGAGGTATTCTTGGTGGAGCAACAGTGATGTGGGTTCTCTTTGAATTGCTTGAATACCACCTGCTCACTTTGGTCGCGCACCTCTTGATTGTTGCGATAGCAGCATTCTTCTTGTGGTCCAATGCTTTAACATTCATTAACAAGTCTCCACCCGAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTCTACAGATTGTCTCTGCAATTACATTTGAGATCAACCGGGCTCTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATCTGAAGCAGTTCCTCTCTGCGATTGCTGGTCTATGGATTGTGTCTATCTTGGGAAAGTCTTATAACTTCTTGACTCTGGTTTACATAGCAACTGTGTTGCTGTTCTCAGTGCCTGTGTTCTATGAGAAATATGAGGATAAGATCGACCCACTTGCAGAGAAGGCTATGTTTGAGATCAAGAAGCAGTATGCCGTATTTGATGCAAAGGTTCTAAGTAAGATTCCTAGGGGGGCATTGAAGAACAAGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

254

Amino Acids

28.52

Weight (kDa)

8.83

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	70 - 225	3.1e-56	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017310)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25120
rosa_chinensis	RchiOBHm_Chr7g0215321
rosa_laevigata	RLG00000002670
rosa_multiflora	Rmu_co8409009.1_g000001 Rmu_sc0021837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244280
rosa_rugosa	Rorug07G0152100
rosa_samantha	Rh7AG288900 Rh7BG280900 Rh7CG308700 Rh7DG292500
rosa_wichuraiana	Rw7G024700 Rw7G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	2 cut(s)	105, 320
AciI	CCGC	4 cut(s)	5, 32, 114, 117
AclWI	GGATC	3 cut(s)	58, 164, 516
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	483, 533
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	287, 296, 413, 748
AluBI	AGCT	2 cut(s)	238, 497
AluI	AGCT	2 cut(s)	238, 497
Alw26I	GTCTC	2 cut(s)	393, 448
AlwI	GGATC	3 cut(s)	58, 164, 516
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	518
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	91, 105, 322
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	360
AvrII	CCTAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	356
BceAI	ACGGC	2 cut(s)	412, 686
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	393, 448
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	115, 118, 345
BlnI	CCTAGG	1 cut(s)	734
BlsI	GCNGC	3 cut(s)	116, 119, 346
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	190, 700
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	67, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	67, 734
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	105, 320
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	86, 92, 469
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	393, 448
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	4 cut(s)	5, 32, 114, 117
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	629
BspFNI	CGCG	2 cut(s)	105, 320
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	58, 164, 516
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	67, 734
BssMI	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	67, 734
Bst4CI	ACNGT	2 cut(s)	268, 604
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	616, 722
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	105, 320
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	3 cut(s)	91, 105, 322
BstKTI	GATC	7 cut(s)	54, 66, 159, 465, 511, 654, 687
BstMAI	GTCTC	2 cut(s)	393, 448
BstMBI	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 344, 671
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	2 cut(s)	105, 320
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	3 cut(s)	63, 156, 508
BstYI	RGATCY	3 cut(s)	63, 156, 508
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	273, 624
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	3 cut(s)	91, 105, 322
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	360
CviAII	CATG	2 cut(s)	68, 185
CviJI	RGCY	8 cut(s)	72, 175, 209, 238, 427, 473, 497, 674
CviKI_1	RGCY	8 cut(s)	72, 175, 209, 238, 427, 473, 497, 674
DdeI	CTNAG	2 cut(s)	616, 722
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	7 cut(s)	53, 65, 158, 464, 510, 653, 686
DpnII	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	20, 47
Eco130I	CCWWGG	2 cut(s)	67, 734
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	483, 533
Eco88I	CYCGRG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	67, 734
EcoT38I	GRGCYC	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	67, 734
FaeI	CATG	2 cut(s)	71, 188
FatI	CATG	2 cut(s)	67, 184
Fnu4HI	GCNGC	3 cut(s)	115, 118, 345
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	115, 118, 345
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	3 cut(s)	90, 104, 321
GluI	GCNGC	3 cut(s)	115, 118, 345
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	3 cut(s)	86, 92, 469
HhaI	GCGC	3 cut(s)	91, 105, 322
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	71, 188
Hin6I	GCGC	3 cut(s)	89, 103, 320
HinP1I	GCGC	3 cut(s)	89, 103, 320
HinfI	GANTC	5 cut(s)	35, 80, 400, 583, 730
HpaII	CCGG	3 cut(s)	86, 92, 469
Hpy166II	GTNNAC	2 cut(s)	151, 592
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	6 cut(s)	243, 328, 404, 419, 580, 688
Hpy8I	GTNNAC	2 cut(s)	151, 592
HpyAV	CCTTC	3 cut(s)	133, 499, 664
HpyCH4III	ACNGT	2 cut(s)	268, 604
HpyCH4V	TGCA	4 cut(s)	181, 449, 665, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 344, 671
HpyF3I	CTNAG	2 cut(s)	616, 722
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	71, 188
HspAI	GCGC	3 cut(s)	89, 103, 320
KasI	GGCGCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	190, 700
MaeI	CTAG	1 cut(s)	735
MalI	GATC	7 cut(s)	53, 65, 158, 464, 510, 653, 686
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
MboII	GAAGA	6 cut(s)	61, 73, 121, 151, 343, 760
MflI	RGATCY	3 cut(s)	63, 156, 508
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	3 cut(s)	287, 414, 450
MluNI	TGGCCA	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	44, 577
MnlI	CCTC	8 cut(s)	13, 21, 49, 219, 239, 335, 533, 637
Mox20I	TGGCCA	1 cut(s)	72
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	371, 381
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	3 cut(s)	86, 92, 469
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	2 cut(s)	105, 320
MwoI	GCNNNNNNNGC	3 cut(s)	111, 344, 671
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	71, 188
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	80, 400, 730
PkrI	GCNGC	3 cut(s)	116, 119, 346
PleI	GAGTC	2 cut(s)	43, 577
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	2 cut(s)	43, 577
PsiI	TTATAA	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	3 cut(s)	63, 156, 508
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	371, 381
SatI	GCNGC	3 cut(s)	115, 118, 345
Sau3AI	GATC	7 cut(s)	51, 63, 156, 462, 508, 651, 684
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	44, 577
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	7 cut(s)	150, 240, 250, 306, 327, 499, 720
SfaNI	GCATC	2 cut(s)	190, 700
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	287, 414, 450
SsiI	CCGC	4 cut(s)	5, 32, 114, 117
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	2 cut(s)	67, 734
TaaI	ACNGT	2 cut(s)	268, 604
TaqI	TCGA	3 cut(s)	54, 134, 654
TasI	AATT	3 cut(s)	287, 414, 450
TauI	GCSGC	2 cut(s)	117, 120
TfiI	GAWTC	3 cut(s)	80, 400, 730
Tru1I	TTAA	2 cut(s)	371, 381
Tru9I	TTAA	2 cut(s)	371, 381
TscAI	CASTG	2 cut(s)	273, 624
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	152, 367
TspRI	CASTG	2 cut(s)	273, 624
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	414
XmaJI	CCTAGG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.