Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017310

Physical Location & Seq

Genomic Coordinates Reverse (-)

38829107 .. 38830952

Gene Structure 1846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGATGGTTGCTATGGACTTCGCCTTGAAATTGTTACCATTACCTGAAGAAGAATATAAGCAGACTTTGCAAGGTCCTGTAGAACAATATTCCACGGCGGCATTGAACGAATGCTATTCGAGACATAAGCGCATGAGACTAGAACAATGCTCAGATGATCACAGATCACTCCCCTCTGGGTGGTTGGATTGCCCATCGTTTGGTCAAGAGATATATTGCATGATACCTTCTAAAGTGCCACTAGCTGAGTCCTACAATCATTATGTTCCTCCTGGTAAAAGATACTCACTCAATCAAGTCATTCAGAAACAGAGACACCTGAAAAGAAAACTCGGTTTGGTGATCGATTTGACCAACACATTCAAATCTCGTTACCATCCAACCTCTGATTTGGAGAAAGAGGGTATTACGCATGTCAAAATTCCATGCAAGGGGCGTTCTGTACCCGACAACCTTTCTGTGAATCAGTTTGTATATGAGGTCATACGATTCAAAAAGATGTACCCGAAGAAGTATATCCTTGTGCATTGTACACATGGACACAATCGAACAGGGTATATGATCATACATTACTTATTGCGCACGCTACCGATGCATACACGCGCCCCCCCGGGAATATATAAACCTTACTACATAGATGCGCTATACTCATTCTATCATGAAAGAAAGCCTGCAGAAATTGTTTGCCCACCCAGATTGGAAGAGGATATGGATACAGATATAATGACAAATGATGATATCTTGGGTGATGAGATACCTCCTGAGCAGCAAGAGGAGATGCGGCTCTCGGCATTCCCAGGGTCACACCCACAGAGGTATTGTTATACTACATGGAAAGCTGAAGGAACAGGATATATGATGTTAATAACTAAGGATGGGTGTTACTTGATTGATAGAAAATTCAATTTTAGGAGAGTTCAAATGAGGTTTCCTTGCAAACACACAAATGACGGGGAGATGGTGATTGATACTGAGCCAGGTTCACAGAAGAAGAAGAGAAGATACCTAATTTATGGCATGATGGCAATCAACAACCGTCCTGTGGTAAAGTTGCCTTTTCATGAGCGGTGGAAGATGATTGAGGAAGAAGTAATTCAGCCTCGGAATGAGCAGCGTCGAGTTTACCAAAGTAGGAATAATCCCAACTACAGATATGAGTTGGAACCATTCATGGTGAGGAGGAAGGGCTTTTGGTTGCTCTCCACGGTTGAAAAGCTTCTGAATGACTTCATTCCAAAGCTTTCACATGATGCAGATGGTGTGATCTTTCAGGATGAAGGCCTTCTAAAGTGGAAATATCCTGCTACGAACTCTATTGATTTTCTATTTGAGGTAAGTGGTGATGGCCGGCAACAGTGCCGTAAAGCGACAAATTTATCACCAATGTACATTGCCAATACAGCTAATTGCAAATATCATTTAGCAACTAAGTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

479

Amino Acids

56.39

Weight (kDa)

8.98

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	106 - 200	2.5e-08	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	110 - 195	7.7e-07	Polymorphic toxin system, DSP-PTPase phosphatase
mRNA_cap_enzyme	PF01331	271 - 425	1.6e-43	mRNA capping enzyme, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017310)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25120
rosa_chinensis	RchiOBHm_Chr7g0215321
rosa_laevigata	RLG00000002670
rosa_multiflora	Rmu_co8409009.1_g000001 Rmu_sc0021837.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244280
rosa_rugosa	Rorug07G0152100
rosa_samantha	Rh7AG288900 Rh7BG280900 Rh7CG308700 Rh7DG292500
rosa_wichuraiana	Rw7G024700 Rw7G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	1066
AccII	CGCG	1 cut(s)	603
AciI	CCGC	3 cut(s)	98, 781, 1066
AcoI	YGGCCR	1 cut(s)	1345
AcsI	RAATTY	3 cut(s)	420, 899, 1372
AcuI	CTGAAG	2 cut(s)	66, 861
AfaI	GTAC	4 cut(s)	444, 503, 532, 1388
AfiI	CCNNNNNNNGG	4 cut(s)	180, 200, 431, 1042
AgsI	TTSAA	7 cut(s)	28, 106, 364, 493, 904, 920, 1211
AjnI	CCWGG	3 cut(s)	271, 796, 976
AluBI	AGCT	5 cut(s)	245, 839, 1216, 1240, 1403
AluI	AGCT	5 cut(s)	245, 839, 1216, 1240, 1403
Alw21I	GWGCWC	1 cut(s)	1436
Alw26I	GTCTC	3 cut(s)	115, 130, 307
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	2 cut(s)	1279, 1345
ApeKI	GCWGC	2 cut(s)	766, 1111
ApoI	RAATTY	3 cut(s)	420, 899, 1372
Asp700I	GAANNNNTTC	4 cut(s)	1092, 1215, 1226, 1281
AspLEI	GCGC	4 cut(s)	132, 582, 605, 643
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	2 cut(s)	611, 612
AsuHPI	GGTGA	6 cut(s)	352, 758, 973, 1186, 1352, 1371
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	986, 1018
Bbv12I	GWGCWC	1 cut(s)	1436
BbvI	GCAGC	2 cut(s)	778, 1123
BccI	CCATC	7 cut(s)	202, 384, 869, 952, 1015, 1250, 1337
BceAI	ACGGC	2 cut(s)	111, 1344
BciT130I	CCWGG	3 cut(s)	273, 798, 978
BciVI	GTATCC	1 cut(s)	706
BclI	TGATCA	2 cut(s)	157, 561
BcnI	CCSGG	2 cut(s)	611, 612
BcoDI	GTCTC	3 cut(s)	115, 130, 307
BfaI	CTAG	2 cut(s)	140, 242
BfmI	CTRYAG	3 cut(s)	78, 672, 1147
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	4 cut(s)	99, 767, 782, 1112
BlsI	GCNGC	4 cut(s)	100, 768, 783, 1113
Bme1390I	CCNGG	5 cut(s)	273, 611, 612, 798, 978
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	1164
BmrFI	CCNGG	5 cut(s)	273, 611, 612, 798, 978
BmsI	GCATC	4 cut(s)	582, 628, 768, 1240
Bpu10I	CCTNAGC	1 cut(s)	762
BpuMI	CCSGG	2 cut(s)	611, 612
Bsa29I	ATCGAT	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	1025
BsaJI	CCNNGG	7 cut(s)	93, 609, 610, 796, 797, 1100, 1203
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 200, 431, 1042
Bse118I	RCCGGY	1 cut(s)	1347
Bse3DI	GCAATG	1 cut(s)	1389
Bse8I	GATNNNNATC	1 cut(s)	1025
BseBI	CCWGG	3 cut(s)	273, 798, 978
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	7 cut(s)	93, 609, 610, 796, 797, 1100, 1203
BseGI	GGATG	3 cut(s)	376, 880, 1279
BseJI	GATNNNNATC	1 cut(s)	1025
BseLI	CCNNNNNNNGG	4 cut(s)	180, 200, 431, 1042
BseMI	GCAATG	1 cut(s)	1389
BseMII	CTCAG	4 cut(s)	165, 237, 753, 963
BseRI	GAGGAG	2 cut(s)	788, 1192
BseXI	GCAGC	2 cut(s)	778, 1123
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	1281, 1347
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	1436
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	611, 1348
BslI	CCNNNNNNNGG	4 cut(s)	180, 200, 431, 1042
BsmAI	GTCTC	3 cut(s)	115, 130, 307
BsmI	GAATGC	2 cut(s)	116, 791
BsnI	GGCC	2 cut(s)	1281, 1347
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	1436
Bsp1407I	TGTACA	2 cut(s)	530, 1386
Bsp143I	GATC	5 cut(s)	157, 164, 342, 561, 1263
BspACI	CCGC	3 cut(s)	98, 781, 1066
BspANI	GGCC	2 cut(s)	1281, 1347
BspCNI	CTCAG	4 cut(s)	164, 238, 754, 964
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	3 cut(s)	658, 1060, 1436
BspLI	GGNNCC	1 cut(s)	1164
BspMAI	CTGCAG	1 cut(s)	676
BsrBI	CCGCTC	1 cut(s)	1066
BsrDI	GCAATG	1 cut(s)	1389
BsrFI	RCCGGY	1 cut(s)	1347
BsrGI	TGTACA	2 cut(s)	530, 1386
BssAI	RCCGGY	1 cut(s)	1347
BssECI	CCNNGG	7 cut(s)	93, 609, 610, 796, 797, 1100, 1203
BssMI	GATC	5 cut(s)	157, 164, 342, 561, 1263
Bst2UI	CCWGG	3 cut(s)	273, 798, 978
Bst4CI	ACNGT	3 cut(s)	1037, 1207, 1356
Bst6I	CTCTTC	2 cut(s)	696, 989
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstAUI	TGTACA	2 cut(s)	530, 1386
BstC8I	GCNNGC	3 cut(s)	584, 672, 1349
BstDEI	CTNAG	6 cut(s)	151, 246, 762, 870, 972, 1428
BstDSI	CCRYGG	2 cut(s)	93, 1203
BstF5I	GGATG	3 cut(s)	376, 880, 1279
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	4 cut(s)	132, 582, 605, 643
BstKTI	GATC	5 cut(s)	160, 167, 345, 564, 1266
BstMAI	GTCTC	3 cut(s)	115, 130, 307
BstMBI	GATC	5 cut(s)	157, 164, 342, 561, 1263
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 592, 1400
BstNI	CCWGG	3 cut(s)	273, 798, 978
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	5 cut(s)	271, 609, 610, 796, 976
BstSFI	CTRYAG	3 cut(s)	78, 672, 1147
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	778, 1123
Bsu15I	ATCGAT	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	1281, 1347
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	93, 1203
BtsCI	GGATG	3 cut(s)	376, 880, 1279
BtsIMutI	CAGTG	1 cut(s)	1361
Cac8I	GCNNGC	3 cut(s)	584, 672, 1349
CciI	TCATGA	3 cut(s)	658, 1060, 1436
CfoI	GCGC	4 cut(s)	132, 582, 605, 643
Cfr10I	RCCGGY	1 cut(s)	1347
Cfr13I	GGNCC	1 cut(s)	74
Cfr9I	CCCGGG	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	1103
Csp6I	GTAC	4 cut(s)	443, 502, 531, 1387
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviQI	GTAC	4 cut(s)	443, 502, 531, 1387
DdeI	CTNAG	6 cut(s)	151, 246, 762, 870, 972, 1428
DpnI	GATC	5 cut(s)	159, 166, 344, 563, 1265
DpnII	GATC	5 cut(s)	157, 164, 342, 561, 1263
EaeI	YGGCCR	1 cut(s)	1345
Eam1104I	CTCTTC	2 cut(s)	696, 989
EarI	CTCTTC	2 cut(s)	696, 989
Eco147I	AGGCCT	1 cut(s)	1281
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	66, 861
Eco88I	CYCGRG	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	3 cut(s)	271, 796, 976
EcoRV	GATATC	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	597
FbaI	TGATCA	2 cut(s)	157, 561
Fnu4HI	GCNGC	4 cut(s)	99, 767, 782, 1112
FokI	GGATG	3 cut(s)	363, 887, 1286
Fsp4HI	GCNGC	4 cut(s)	99, 767, 782, 1112
FspBI	CTAG	2 cut(s)	140, 242
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	4 cut(s)	131, 581, 604, 642
GluI	GCNGC	4 cut(s)	99, 767, 782, 1112
HaeIII	GGCC	2 cut(s)	1281, 1347
HapII	CCGG	2 cut(s)	611, 1348
HgaI	GACGC	1 cut(s)	1103
HhaI	GCGC	4 cut(s)	132, 582, 605, 643
Hin6I	GCGC	4 cut(s)	130, 580, 603, 641
HinP1I	GCGC	4 cut(s)	130, 580, 603, 641
HindIII	AAGCTT	2 cut(s)	1214, 1238
HinfI	GANTC	3 cut(s)	248, 463, 489
HpaII	CCGG	2 cut(s)	611, 1348
HphI	GGTGA	6 cut(s)	352, 758, 973, 1186, 1352, 1371
Hpy166II	GTNNAC	3 cut(s)	533, 983, 1123
Hpy188I	TCNGA	5 cut(s)	154, 306, 388, 1104, 1221
Hpy188III	TCNNGA	7 cut(s)	120, 206, 659, 761, 1061, 1271, 1437
Hpy8I	GTNNAC	3 cut(s)	533, 983, 1123
Hpy99I	CGWCG	1 cut(s)	1119
HpyAV	CCTTC	5 cut(s)	237, 836, 1177, 1271, 1292
HpyCH4III	ACNGT	3 cut(s)	1037, 1207, 1356
HpyCH4V	TGCA	9 cut(s)	70, 219, 429, 526, 595, 674, 936, 1253, 1410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 592, 1400
HpyF3I	CTNAG	6 cut(s)	151, 246, 762, 870, 972, 1428
HspAI	GCGC	4 cut(s)	130, 580, 603, 641
KroI	GCCGGC	1 cut(s)	1347
KroNI	GCCGGC	1 cut(s)	1349
Ksp22I	TGATCA	2 cut(s)	157, 561
Kzo9I	GATC	5 cut(s)	157, 164, 342, 561, 1263
Lsp1109I	GCAGC	2 cut(s)	778, 1123
LweI	GCATC	4 cut(s)	582, 628, 768, 1240
MaeI	CTAG	2 cut(s)	140, 242
MaeIII	GTNAC	4 cut(s)	33, 371, 801, 881
MalI	GATC	5 cut(s)	159, 166, 344, 563, 1265
MbiI	CCGCTC	1 cut(s)	1066
MboI	GATC	5 cut(s)	157, 164, 342, 561, 1263
MhlI	GDGCHC	1 cut(s)	1436
MluCI	AATT	9 cut(s)	29, 420, 678, 899, 904, 1008, 1092, 1372, 1405
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	3 cut(s)	165, 404, 1140
Mph1103I	ATGCAT	1 cut(s)	597
MroNI	GCCGGC	1 cut(s)	1347
MroXI	GAANNNNTTC	4 cut(s)	1092, 1215, 1226, 1281
MseI	TTAA	1 cut(s)	863
MslI	CAYNNNNRTG	1 cut(s)	945
MspI	CCGG	2 cut(s)	611, 1348
MspR9I	CCNGG	5 cut(s)	273, 611, 612, 798, 978
Mva1269I	GAATGC	2 cut(s)	116, 791
MvaI	CCWGG	3 cut(s)	273, 798, 978
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	67, 592, 1400
NaeI	GCCGGC	1 cut(s)	1349
NciI	CCSGG	2 cut(s)	611, 612
NdeII	GATC	5 cut(s)	157, 164, 342, 561, 1263
NgoMIV	GCCGGC	1 cut(s)	1347
NlaIV	GGNNCC	1 cut(s)	1164
NmeAIII	GCCGAG	1 cut(s)	767
NmuCI	GTSAC	1 cut(s)	801
NsbI	TGCGCA	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	1 cut(s)	416
PagI	TCATGA	3 cut(s)	658, 1060, 1436
PasI	CCCWGGG	1 cut(s)	797
PceI	AGGCCT	1 cut(s)	1281
PctI	GAATGC	2 cut(s)	116, 791
PdiI	GCCGGC	1 cut(s)	1349
PdmI	GAANNNNTTC	4 cut(s)	1092, 1215, 1226, 1281
PfeI	GAWTC	2 cut(s)	463, 489
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	100, 768, 783, 1113
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	271, 796, 976
PspGI	CCWGG	3 cut(s)	271, 796, 976
PspN4I	GGNNCC	1 cut(s)	1164
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	676
RsaI	GTAC	4 cut(s)	444, 503, 532, 1388
RsaNI	GTAC	4 cut(s)	443, 502, 531, 1387
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	1 cut(s)	863
SatI	GCNGC	4 cut(s)	99, 767, 782, 1112
Sau3AI	GATC	5 cut(s)	157, 164, 342, 561, 1263
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	5 cut(s)	273, 611, 612, 798, 978
SduI	GDGCHC	1 cut(s)	1436
SfaNI	GCATC	4 cut(s)	582, 628, 768, 1240
SfcI	CTRYAG	3 cut(s)	78, 672, 1147
SinI	GGWCC	1 cut(s)	74
SmaI	CCCGGG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	945
Sse9I	AATT	9 cut(s)	29, 420, 678, 899, 904, 1008, 1092, 1372, 1405
SseBI	AGGCCT	1 cut(s)	1281
SsiI	CCGC	3 cut(s)	98, 781, 1066
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	2 cut(s)	140, 242
StuI	AGGCCT	1 cut(s)	1281
StyD4I	CCNGG	5 cut(s)	271, 609, 610, 796, 976
TaaI	ACNGT	3 cut(s)	1037, 1207, 1356
TaqI	TCGA	4 cut(s)	119, 345, 547, 1117
TasI	AATT	9 cut(s)	29, 420, 678, 899, 904, 1008, 1092, 1372, 1405
TatI	WGTACW	2 cut(s)	530, 1386
TauI	GCSGC	2 cut(s)	101, 784
TfiI	GAWTC	2 cut(s)	463, 489
Tru1I	TTAA	1 cut(s)	863
Tru9I	TTAA	1 cut(s)	863
TscAI	CASTG	1 cut(s)	1361
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	2 cut(s)	766, 1111
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	5 cut(s)	675, 1049, 1159, 1219, 1290
TspMI	CCCGGG	1 cut(s)	610
TspRI	CASTG	1 cut(s)	1361
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	3 cut(s)	420, 899, 1372
XceI	RCATGY	1 cut(s)	416
XmaI	CCCGGG	1 cut(s)	610
XmnI	GAANNNNTTC	4 cut(s)	1092, 1215, 1226, 1281
XspI	CTAG	2 cut(s)	140, 242
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.