Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446773.1

Orthogroup ID

OG0017678

Physical Location & Seq

Genomic Coordinates Reverse (-)

376 .. 1524

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgcatgacacgtttaaggatcataattctggcagttccattaaaagctcctctacccctccatcgtcatcagctgctcaattctatgacttcaatgcacaaaagtctgaggagaagattagggttggtcaaatatgggcgctgtatggtgatgggaatggaatgtctaagacctttgctcaagttaagaggattaatgtcaggccaaacaaaagagttcagaggactgtgtcttcggggcatttttatttgcgaatgggattgcttgaacctttcttggaacccaaaaacatggttgagccagtgtgttgtgggacatttaaagtcaaacgagctccacctacacttttctccctcacttcattatctcatcgtgtaaaagccagacttttgggccagaatatatttgaaataattcctaggagaggtgaagtgtgggcactatacaaggagcacaatccactggtgacctatcctaacatggggaagggtgaatgtctagtggtggaagtgctggaagttcagcaccagagtacaaagattgtggttctggaacagcttaatgcatttaagtcagttttcaaggctccaacagtgcagagtaccaaaactggtgtcattgatataccgcaggctgagttgggtagattctctcaccagatttctgcttttaagcataccaaggtgagtcacagtcgacttgcagggtgttgggagcttgatccattatcagtttctggttatgagaaagatggtgttcccaaatgtttctttaattgtgatcccgcttctctgcttaacaatcctgactactcctgtgaccttggtgatttgaaaatggataaaagaagcatgagtactgaaactcatggtttgtctggtgagttacttgaaggtgcagttaaatctgtaataggttctgcgagcatagaaacaggtacgagaaaggagacaccttttgctgaaagagagacttctgagaaagttgaatcacgagtttgtcacttctccttctttggtaaagatttggtggattccgttaagctagaagcaagtcaatgtgttaatgctgtagacagtggcatgcatatcgcaaaagatggcaatctcactcaaccaaagggaagtgctattccattgttgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

382

Amino Acids

42.14

Weight (kDa)

8.73

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017678)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04682
rosa_chinensis	RchiOBHm_Chr3g0453161
rosa_laevigata	RLG00000025532
rosa_multiflora	Rmu_co8446773.1_g000001 Rmu_sc0007132.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430220
rosa_rugosa	Rorug02G0646800
rosa_samantha	Rh3AG049600 Rh3BG050800 Rh3CG051000 Rh3DG051600
rosa_wichuraiana	Rw3G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	697, 1074
AciI	CCGC	2 cut(s)	629, 786
AclWI	GGATC	3 cut(s)	27, 716, 776
AfaI	GTAC	4 cut(s)	535, 604, 859, 940
AfiI	CCNNNNNNNGG	3 cut(s)	425, 482, 1142
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	7 cut(s)	94, 269, 410, 583, 835, 893, 989
AluBI	AGCT	6 cut(s)	48, 74, 335, 559, 718, 1045
AluI	AGCT	6 cut(s)	48, 74, 335, 559, 718, 1045
Alw21I	GWGCWC	2 cut(s)	337, 456
Alw26I	GTCTC	2 cut(s)	944, 965
AlwI	GGATC	3 cut(s)	27, 716, 776
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	2 cut(s)	203, 394
ApeKI	GCWGC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	4 cut(s)	217, 249, 600, 632
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	414
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	8 cut(s)	161, 440, 478, 503, 647, 697, 839, 893
AvrII	CCTAGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	841, 873
BauI	CACGAG	1 cut(s)	993
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	337, 456
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	4 cut(s)	70, 146, 746, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BcoDI	GTCTC	2 cut(s)	944, 965
BfaI	CTAG	3 cut(s)	420, 500, 1046
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	1 cut(s)	75
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	282, 588
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaJI	CCNNGG	3 cut(s)	419, 681, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 482, 1142
Bse1I	ACTGG	3 cut(s)	302, 468, 616
Bse8I	GATNNNNATC	1 cut(s)	1104
BseDI	CCNNGG	3 cut(s)	419, 681, 823
BseJI	GATNNNNATC	1 cut(s)	1104
BseLI	CCNNNNNNNGG	3 cut(s)	425, 482, 1142
BseMII	CTCAG	3 cut(s)	99, 627, 969
BseNI	ACTGG	3 cut(s)	302, 468, 616
BseRI	GAGGAG	2 cut(s)	40, 125
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	2 cut(s)	617, 918
BshFI	GGCC	2 cut(s)	205, 396
BsiHKAI	GWGCWC	2 cut(s)	337, 456
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	3 cut(s)	425, 482, 1142
BsmAI	GTCTC	2 cut(s)	944, 965
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	205, 396
Bsp1286I	GDGCHC	3 cut(s)	337, 442, 456
Bsp143I	GATC	3 cut(s)	19, 721, 781
BspACI	CCGC	2 cut(s)	629, 786
BspANI	GGCC	2 cut(s)	205, 396
BspCNI	CTCAG	3 cut(s)	100, 628, 970
BspLI	GGNNCC	2 cut(s)	282, 588
BspPI	GGATC	3 cut(s)	27, 716, 776
BsrI	ACTGG	3 cut(s)	302, 468, 616
BssECI	CCNNGG	3 cut(s)	419, 681, 823
BssMI	GATC	3 cut(s)	19, 721, 781
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	3 cut(s)	419, 681, 823
Bst2BI	CACGAG	1 cut(s)	993
Bst4CI	ACNGT	4 cut(s)	229, 595, 695, 1079
BstC8I	GCNNGC	3 cut(s)	633, 925, 1085
BstDEI	CTNAG	4 cut(s)	108, 168, 636, 978
BstEII	GGTNACC	1 cut(s)	466
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	22, 724, 784
BstMAI	GTCTC	2 cut(s)	944, 965
BstMBI	GATC	3 cut(s)	19, 721, 781
BstNSI	RCATGY	1 cut(s)	1087
BstPI	GGTNACC	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	2 cut(s)	292, 391
BsuRI	GGCC	2 cut(s)	205, 396
BtsIMutI	CAGTG	4 cut(s)	309, 461, 600, 1084
Cac8I	GCNNGC	3 cut(s)	633, 925, 1085
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	4 cut(s)	534, 603, 858, 939
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	6 cut(s)	5, 292, 481, 853, 869, 1084
CviQI	GTAC	4 cut(s)	534, 603, 858, 939
DdeI	CTNAG	4 cut(s)	108, 168, 636, 978
DpnI	GATC	3 cut(s)	21, 723, 783
DpnII	GATC	3 cut(s)	19, 721, 781
DraI	TTTAAA	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	3 cut(s)	419, 681, 823
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO65I	GGTNACC	1 cut(s)	466
EcoT14I	CCWWGG	3 cut(s)	419, 681, 823
EcoT22I	ATGCAT	3 cut(s)	6, 568, 1089
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	3 cut(s)	419, 681, 823
FaeI	CATG	6 cut(s)	8, 295, 484, 856, 872, 1087
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 958, 990
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	6 cut(s)	4, 291, 480, 852, 868, 1083
FauI	CCCGC	1 cut(s)	793
FblI	GTMKAC	2 cut(s)	697, 1074
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	3 cut(s)	420, 500, 1046
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	205, 396
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	6 cut(s)	8, 295, 484, 856, 872, 1087
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	698
HindII	GTYRAC	1 cut(s)	698
HinfI	GANTC	4 cut(s)	648, 688, 989, 1034
HphI	GGTGA	8 cut(s)	161, 440, 478, 503, 647, 697, 839, 893
Hpy166II	GTNNAC	2 cut(s)	698, 1075
Hpy188I	TCNGA	3 cut(s)	109, 222, 979
Hpy188III	TCNNGA	3 cut(s)	551, 806, 993
Hpy8I	GTNNAC	2 cut(s)	698, 1075
HpyAV	CCTTC	3 cut(s)	481, 887, 1021
HpyCH4III	ACNGT	4 cut(s)	229, 595, 695, 1079
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	4, 98, 566, 598, 704, 899, 1087
HpyF3I	CTNAG	4 cut(s)	108, 168, 636, 978
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	8, 295, 484, 856, 872, 1087
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	19, 721, 781
LmnI	GCTCC	5 cut(s)	53, 340, 451, 592, 715
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	3 cut(s)	420, 500, 1046
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	5 cut(s)	466, 689, 818, 885, 1001
MalI	GATC	3 cut(s)	21, 723, 783
MboI	GATC	3 cut(s)	19, 721, 781
MboII	GAAGA	2 cut(s)	127, 225
MhlI	GDGCHC	3 cut(s)	337, 442, 456
MluCI	AATT	4 cut(s)	25, 80, 414, 775
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	7 cut(s)	61, 69, 103, 183, 216, 365, 419
Mph1103I	ATGCAT	3 cut(s)	6, 568, 1089
MroXI	GAANNNNTTC	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	74
NdeII	GATC	3 cut(s)	19, 721, 781
NlaIII	CATG	6 cut(s)	8, 295, 484, 856, 872, 1087
NlaIV	GGNNCC	2 cut(s)	282, 588
NmuCI	GTSAC	4 cut(s)	466, 689, 818, 1001
NsiI	ATGCAT	3 cut(s)	6, 568, 1089
NspI	RCATGY	1 cut(s)	1087
PaeI	GCATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	648, 989, 1034
PflFI	GACNNNGTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	282, 588
PspPI	GGNCC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	737
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	4 cut(s)	535, 604, 859, 940
RsaNI	GTAC	4 cut(s)	534, 603, 858, 939
SacI	GAGCTC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	696
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	19, 721, 781
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	1 cut(s)	697
SduI	GDGCHC	3 cut(s)	337, 442, 456
SfcI	CTRYAG	1 cut(s)	1071
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	1087
Sse9I	AATT	4 cut(s)	25, 80, 414, 775
SsiI	CCGC	2 cut(s)	629, 786
SspMI	CTAG	3 cut(s)	420, 500, 1046
SstI	GAGCTC	1 cut(s)	337
StyI	CCWWGG	3 cut(s)	419, 681, 823
TaaI	ACNGT	4 cut(s)	229, 595, 695, 1079
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	697
TasI	AATT	4 cut(s)	25, 80, 414, 775
TatI	WGTACW	2 cut(s)	533, 857
TfiI	GAWTC	3 cut(s)	648, 989, 1034
TscAI	CASTG	4 cut(s)	309, 468, 600, 1084
TseFI	GTSAC	4 cut(s)	466, 689, 818, 1001
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	4 cut(s)	466, 689, 818, 1001
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	1027
TspRI	CASTG	4 cut(s)	309, 468, 600, 1084
Tth111I	GACNNNGTC	1 cut(s)	229
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	1087
XmaJI	CCTAGG	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	697, 1074
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	3 cut(s)	420, 500, 1046
ZrmI	AGTACT	1 cut(s)	859
Zsp2I	ATGCAT	3 cut(s)	6, 568, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.