Domain of unknown function (DUF3444)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04682 |
| rosa_chinensis | RchiOBHm_Chr3g0453161 |
| rosa_laevigata | RLG00000025532 |
| rosa_multiflora | Rmu_co8446773.1_g000001 Rmu_sc0007132.1_g000008 |
| rosa_roxburghii | Rroxscaffold_6G00430220 |
| rosa_rugosa | Rorug02G0646800 |
| rosa_samantha | Rh3AG049600 Rh3BG050800 Rh3CG051000 Rh3DG051600 |
| rosa_wichuraiana | Rw3G003810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 159, 1285, 1662 |
| AciI | CCGC | 1 cut(s) | 1217 |
| AclWI | GGATC | 3 cut(s) | 615, 1304, 1364 |
| AcuI | CTGAAG | 1 cut(s) | 174 |
| AfaI | GTAC | 4 cut(s) | 1123, 1192, 1447, 1528 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1013, 1070, 1730 |
| AflIII | ACRYGT | 1 cut(s) | 597 |
| AluBI | AGCT | 8 cut(s) | 101, 189, 636, 662, 923, 1147, 1306, 1633 |
| AluI | AGCT | 8 cut(s) | 101, 189, 636, 662, 923, 1147, 1306, 1633 |
| Alw21I | GWGCWC | 2 cut(s) | 925, 1044 |
| Alw26I | GTCTC | 4 cut(s) | 188, 460, 1532, 1553 |
| AlwI | GGATC | 3 cut(s) | 615, 1304, 1364 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1325 |
| AoxI | GGCC | 2 cut(s) | 791, 982 |
| ApeKI | GCWGC | 1 cut(s) | 662 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 805, 837, 1188, 1220 |
| AseI | ATTAAT | 1 cut(s) | 783 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1002 |
| AspA2I | CCTAGG | 1 cut(s) | 1007 |
| AspLEI | GCGC | 1 cut(s) | 730 |
| AspS9I | GGNCC | 1 cut(s) | 982 |
| AvrII | CCTAGG | 1 cut(s) | 1007 |
| AxyI | CCTNAGG | 1 cut(s) | 117 |
| BaeGI | GKGCMC | 1 cut(s) | 1030 |
| BanII | GRGCYC | 1 cut(s) | 925 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1429, 1461 |
| BauI | CACGAG | 1 cut(s) | 1581 |
| BbsI | GAAGAC | 1 cut(s) | 813 |
| Bbv12I | GWGCWC | 2 cut(s) | 925, 1044 |
| BbvI | GCAGC | 1 cut(s) | 649 |
| BccI | CCATC | 8 cut(s) | 290, 380, 416, 506, 658, 734, 1334, 1682 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1660, 1694 |
| BclI | TGATCA | 1 cut(s) | 406 |
| BcoDI | GTCTC | 4 cut(s) | 188, 460, 1532, 1553 |
| BfaI | CTAG | 3 cut(s) | 1008, 1088, 1634 |
| BfmI | CTRYAG | 1 cut(s) | 1659 |
| BfoI | RGCGCY | 1 cut(s) | 731 |
| BisI | GCNGC | 1 cut(s) | 663 |
| BlnI | CCTAGG | 1 cut(s) | 1007 |
| BlsI | GCNGC | 1 cut(s) | 664 |
| BmcAI | AGTACT | 1 cut(s) | 1447 |
| BmgT120I | GGNCC | 1 cut(s) | 982 |
| BmiI | GGNNCC | 2 cut(s) | 870, 1176 |
| BpiI | GAAGAC | 1 cut(s) | 813 |
| BpmI | CTGGAG | 2 cut(s) | 96, 219 |
| BpuEI | CTTGAG | 1 cut(s) | 753 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1692 |
| BsaJI | CCNNGG | 3 cut(s) | 1007, 1269, 1411 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1013, 1070, 1730 |
| Bse1I | ACTGG | 4 cut(s) | 202, 890, 1056, 1204 |
| Bse21I | CCTNAGG | 1 cut(s) | 117 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1692 |
| BseDI | CCNNGG | 3 cut(s) | 1007, 1269, 1411 |
| BseGI | GGATG | 2 cut(s) | 127, 517 |
| BseJI | GATNNNNATC | 1 cut(s) | 1692 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1013, 1070, 1730 |
| BseMII | CTCAG | 6 cut(s) | 108, 477, 586, 687, 1215, 1557 |
| BseNI | ACTGG | 4 cut(s) | 202, 890, 1056, 1204 |
| BseRI | GAGGAG | 3 cut(s) | 509, 628, 713 |
| BseSI | GKGCMC | 1 cut(s) | 1030 |
| BseXI | GCAGC | 1 cut(s) | 649 |
| BsgI | GTGCAG | 2 cut(s) | 1205, 1506 |
| BshFI | GGCC | 2 cut(s) | 793, 984 |
| BsiHKAI | GWGCWC | 2 cut(s) | 925, 1044 |
| BslFI | GGGAC | 1 cut(s) | 916 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1013, 1070, 1730 |
| BsmAI | GTCTC | 4 cut(s) | 188, 460, 1532, 1553 |
| BsmFI | GGGAC | 1 cut(s) | 916 |
| BsmI | GAATGC | 2 cut(s) | 508, 594 |
| BsnI | GGCC | 2 cut(s) | 793, 984 |
| Bsp1286I | GDGCHC | 3 cut(s) | 925, 1030, 1044 |
| Bsp143I | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| BspACI | CCGC | 1 cut(s) | 1217 |
| BspANI | GGCC | 2 cut(s) | 793, 984 |
| BspCNI | CTCAG | 6 cut(s) | 109, 478, 585, 688, 1216, 1558 |
| BspHI | TCATGA | 1 cut(s) | 409 |
| BspLI | GGNNCC | 2 cut(s) | 870, 1176 |
| BspPI | GGATC | 3 cut(s) | 615, 1304, 1364 |
| BsrI | ACTGG | 4 cut(s) | 202, 890, 1056, 1204 |
| BssECI | CCNNGG | 3 cut(s) | 1007, 1269, 1411 |
| BssMI | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| BssSI | CACGAG | 1 cut(s) | 1581 |
| BssT1I | CCWWGG | 3 cut(s) | 1007, 1269, 1411 |
| Bst2BI | CACGAG | 1 cut(s) | 1581 |
| Bst4CI | ACNGT | 5 cut(s) | 42, 817, 1183, 1283, 1667 |
| Bst6I | CTCTTC | 2 cut(s) | 116, 470 |
| BstC8I | GCNNGC | 3 cut(s) | 1221, 1513, 1673 |
| BstDEI | CTNAG | 7 cut(s) | 117, 486, 572, 696, 756, 1224, 1566 |
| BstEII | GGTNACC | 1 cut(s) | 1054 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| BstF5I | GGATG | 2 cut(s) | 127, 517 |
| BstH2I | RGCGCY | 1 cut(s) | 731 |
| BstHHI | GCGC | 1 cut(s) | 730 |
| BstKTI | GATC | 4 cut(s) | 409, 610, 1312, 1372 |
| BstMAI | GTCTC | 4 cut(s) | 188, 460, 1532, 1553 |
| BstMBI | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 29, 98 |
| BstNSI | RCATGY | 1 cut(s) | 1675 |
| BstPI | GGTNACC | 1 cut(s) | 1054 |
| BstSFI | CTRYAG | 1 cut(s) | 1659 |
| BstSLI | GKGCMC | 1 cut(s) | 1030 |
| BstV1I | GCAGC | 1 cut(s) | 649 |
| BstV2I | GAAGAC | 1 cut(s) | 813 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 880, 979 |
| Bsu36I | CCTNAGG | 1 cut(s) | 117 |
| BsuRI | GGCC | 2 cut(s) | 793, 984 |
| BtsCI | GGATG | 2 cut(s) | 127, 517 |
| BtsI | GCAGTG | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 6 cut(s) | 513, 580, 897, 1049, 1188, 1672 |
| Cac8I | GCNNGC | 3 cut(s) | 1221, 1513, 1673 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1325 |
| CciI | TCATGA | 1 cut(s) | 409 |
| CfoI | GCGC | 1 cut(s) | 730 |
| Cfr13I | GGNCC | 1 cut(s) | 982 |
| Csp6I | GTAC | 4 cut(s) | 1122, 1191, 1446, 1527 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1113, 1148 |
| CviAII | CATG | 7 cut(s) | 410, 593, 880, 1069, 1441, 1457, 1672 |
| CviQI | GTAC | 4 cut(s) | 1122, 1191, 1446, 1527 |
| DdeI | CTNAG | 7 cut(s) | 117, 486, 572, 696, 756, 1224, 1566 |
| DpnI | GATC | 4 cut(s) | 408, 609, 1311, 1371 |
| DpnII | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| DraI | TTTAAA | 1 cut(s) | 910 |
| Eam1104I | CTCTTC | 2 cut(s) | 116, 470 |
| EarI | CTCTTC | 2 cut(s) | 116, 470 |
| Ecl136II | GAGCTC | 1 cut(s) | 923 |
| Eco130I | CCWWGG | 3 cut(s) | 1007, 1269, 1411 |
| Eco24I | GRGCYC | 1 cut(s) | 925 |
| Eco53kI | GAGCTC | 1 cut(s) | 923 |
| Eco57I | CTGAAG | 1 cut(s) | 174 |
| Eco81I | CCTNAGG | 1 cut(s) | 117 |
| Eco91I | GGTNACC | 1 cut(s) | 1054 |
| EcoICRI | GAGCTC | 1 cut(s) | 923 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| EcoO65I | GGTNACC | 1 cut(s) | 1054 |
| EcoT14I | CCWWGG | 3 cut(s) | 1007, 1269, 1411 |
| EcoT22I | ATGCAT | 3 cut(s) | 594, 1156, 1677 |
| EcoT38I | GRGCYC | 1 cut(s) | 925 |
| ErhI | CCWWGG | 3 cut(s) | 1007, 1269, 1411 |
| FaeI | CATG | 7 cut(s) | 413, 596, 883, 1072, 1444, 1460, 1675 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 960, 992, 1546, 1578 |
| FaqI | GGGAC | 1 cut(s) | 916 |
| FatI | CATG | 7 cut(s) | 409, 592, 879, 1068, 1440, 1456, 1671 |
| FbaI | TGATCA | 1 cut(s) | 406 |
| FblI | GTMKAC | 3 cut(s) | 159, 1285, 1662 |
| Fnu4HI | GCNGC | 1 cut(s) | 663 |
| FokI | GGATG | 2 cut(s) | 134, 524 |
| FriOI | GRGCYC | 1 cut(s) | 925 |
| Fsp4HI | GCNGC | 1 cut(s) | 663 |
| FspBI | CTAG | 3 cut(s) | 1008, 1088, 1634 |
| GlaI | GCGC | 1 cut(s) | 729 |
| GluI | GCNGC | 1 cut(s) | 663 |
| GsuI | CTGGAG | 2 cut(s) | 96, 219 |
| HaeII | RGCGCY | 1 cut(s) | 731 |
| HaeIII | GGCC | 2 cut(s) | 793, 984 |
| HhaI | GCGC | 1 cut(s) | 730 |
| Hin1II | CATG | 7 cut(s) | 413, 596, 883, 1072, 1444, 1460, 1675 |
| Hin6I | GCGC | 1 cut(s) | 728 |
| HinP1I | GCGC | 1 cut(s) | 728 |
| HincII | GTYRAC | 1 cut(s) | 1286 |
| HindII | GTYRAC | 1 cut(s) | 1286 |
| HinfI | GANTC | 8 cut(s) | 55, 108, 176, 538, 1236, 1276, 1577, 1622 |
| Hpy166II | GTNNAC | 3 cut(s) | 160, 1286, 1663 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 154, 193, 697, 810, 1567 |
| Hpy188III | TCNNGA | 6 cut(s) | 59, 255, 410, 1139, 1394, 1581 |
| Hpy8I | GTNNAC | 3 cut(s) | 160, 1286, 1663 |
| Hpy99I | CGWCG | 5 cut(s) | 281, 338, 347, 350, 353 |
| HpyAV | CCTTC | 5 cut(s) | 261, 484, 1069, 1475, 1609 |
| HpyCH4III | ACNGT | 5 cut(s) | 42, 817, 1183, 1283, 1667 |
| HpyCH4IV | ACGT | 1 cut(s) | 599 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 29, 98 |
| HpyF3I | CTNAG | 7 cut(s) | 117, 486, 572, 696, 756, 1224, 1566 |
| HpySE526I | ACGT | 1 cut(s) | 599 |
| Hsp92II | CATG | 7 cut(s) | 413, 596, 883, 1072, 1444, 1460, 1675 |
| HspAI | GCGC | 1 cut(s) | 728 |
| Ksp22I | TGATCA | 1 cut(s) | 406 |
| Kzo9I | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| LmnI | GCTCC | 8 cut(s) | 77, 194, 451, 641, 928, 1039, 1180, 1303 |
| Lsp1109I | GCAGC | 1 cut(s) | 649 |
| MaeI | CTAG | 3 cut(s) | 1008, 1088, 1634 |
| MaeII | ACGT | 1 cut(s) | 599 |
| MaeIII | GTNAC | 5 cut(s) | 1054, 1277, 1406, 1473, 1589 |
| MalI | GATC | 4 cut(s) | 408, 609, 1311, 1371 |
| MboI | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| MboII | GAAGA | 7 cut(s) | 64, 103, 377, 487, 511, 715, 813 |
| MfeI | CAATTG | 1 cut(s) | 470 |
| MhlI | GDGCHC | 3 cut(s) | 925, 1030, 1044 |
| MluCI | AATT | 9 cut(s) | 137, 168, 227, 470, 566, 613, 668, 1002, 1363 |
| MlyI | GAGTC | 3 cut(s) | 102, 547, 1285 |
| MmeI | TCCRAC | 1 cut(s) | 1202 |
| Mph1103I | ATGCAT | 3 cut(s) | 594, 1156, 1677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1002 |
| MslI | CAYNNNNRTG | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 1 cut(s) | 662 |
| MunI | CAATTG | 1 cut(s) | 470 |
| Mva1269I | GAATGC | 2 cut(s) | 508, 594 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 29, 98 |
| NdeII | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| NlaIII | CATG | 7 cut(s) | 413, 596, 883, 1072, 1444, 1460, 1675 |
| NlaIV | GGNNCC | 2 cut(s) | 870, 1176 |
| NmuCI | GTSAC | 4 cut(s) | 1054, 1277, 1406, 1589 |
| NsiI | ATGCAT | 3 cut(s) | 594, 1156, 1677 |
| NspI | RCATGY | 1 cut(s) | 1675 |
| PaeI | GCATGC | 1 cut(s) | 1675 |
| PagI | TCATGA | 1 cut(s) | 409 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 339, 342, 348, 354 |
| PctI | GAATGC | 2 cut(s) | 508, 594 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1002 |
| PfeI | GAWTC | 5 cut(s) | 55, 176, 1236, 1577, 1622 |
| PflFI | GACNNNGTC | 1 cut(s) | 817 |
| PkrI | GCNGC | 1 cut(s) | 664 |
| PleI | GAGTC | 3 cut(s) | 102, 546, 1284 |
| PpsI | GAGTC | 3 cut(s) | 102, 546, 1284 |
| PshBI | ATTAAT | 1 cut(s) | 783 |
| Psp124BI | GAGCTC | 1 cut(s) | 925 |
| PspEI | GGTNACC | 1 cut(s) | 1054 |
| PspN4I | GGNNCC | 2 cut(s) | 870, 1176 |
| PspPI | GGNCC | 1 cut(s) | 982 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1325 |
| PsyI | GACNNNGTC | 1 cut(s) | 817 |
| PvuII | CAGCTG | 1 cut(s) | 662 |
| RsaI | GTAC | 4 cut(s) | 1123, 1192, 1447, 1528 |
| RsaNI | GTAC | 4 cut(s) | 1122, 1191, 1446, 1527 |
| RseI | CAYNNNNRTG | 1 cut(s) | 414 |
| SacI | GAGCTC | 1 cut(s) | 925 |
| SalI | GTCGAC | 1 cut(s) | 1284 |
| SatI | GCNGC | 1 cut(s) | 663 |
| Sau3AI | GATC | 4 cut(s) | 406, 607, 1309, 1369 |
| Sau96I | GGNCC | 1 cut(s) | 982 |
| ScaI | AGTACT | 1 cut(s) | 1447 |
| SchI | GAGTC | 3 cut(s) | 102, 547, 1285 |
| SduI | GDGCHC | 3 cut(s) | 925, 1030, 1044 |
| SfcI | CTRYAG | 1 cut(s) | 1659 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 414 |
| SmlI | CTYRAG | 1 cut(s) | 768 |
| SmoI | CTYRAG | 1 cut(s) | 768 |
| SphI | GCATGC | 1 cut(s) | 1675 |
| Sse9I | AATT | 9 cut(s) | 137, 168, 227, 470, 566, 613, 668, 1002, 1363 |
| SsiI | CCGC | 1 cut(s) | 1217 |
| SspMI | CTAG | 3 cut(s) | 1008, 1088, 1634 |
| SstI | GAGCTC | 1 cut(s) | 925 |
| StyI | CCWWGG | 3 cut(s) | 1007, 1269, 1411 |
| TaaI | ACNGT | 5 cut(s) | 42, 817, 1183, 1283, 1667 |
| TaiI | ACGT | 1 cut(s) | 602 |
| TaqI | TCGA | 2 cut(s) | 234, 1285 |
| TasI | AATT | 9 cut(s) | 137, 168, 227, 470, 566, 613, 668, 1002, 1363 |
| TatI | WGTACW | 2 cut(s) | 1121, 1445 |
| TfiI | GAWTC | 5 cut(s) | 55, 176, 1236, 1577, 1622 |
| TscAI | CASTG | 6 cut(s) | 513, 580, 897, 1056, 1188, 1672 |
| TseFI | GTSAC | 4 cut(s) | 1054, 1277, 1406, 1589 |
| TseI | GCWGC | 1 cut(s) | 662 |
| Tsp45I | GTSAC | 4 cut(s) | 1054, 1277, 1406, 1589 |
| TspDTI | ATGAA | 3 cut(s) | 65, 378, 939 |
| TspGWI | ACGGA | 1 cut(s) | 1615 |
| TspRI | CASTG | 6 cut(s) | 513, 580, 897, 1056, 1188, 1672 |
| Tth111I | GACNNNGTC | 1 cut(s) | 817 |
| VspI | ATTAAT | 1 cut(s) | 783 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| XceI | RCATGY | 1 cut(s) | 1675 |
| XmaJI | CCTAGG | 1 cut(s) | 1007 |
| XmiI | GTMKAC | 3 cut(s) | 159, 1285, 1662 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1002 |
| XspI | CTAG | 3 cut(s) | 1008, 1088, 1634 |
| ZrmI | AGTACT | 1 cut(s) | 1447 |
| Zsp2I | ATGCAT | 3 cut(s) | 594, 1156, 1677 |