Rmu_co8455755.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8455755.1
OG0015871
Physical Location & Seq
Reverse (-)
2 .. 1625
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8455755.1_g000001.1.cds

Sequence Viewer

Length: 1624 bp
atgcctgaggagttgttaatagggttgggtaatttgaccacattggacctcagtgggaacaggttttttggtgaagttgccatcagcattgggagtttgagtcagttaatggtgctgaatctgagtggcaatggcttttctgggagggtgccgactagcttgggtagtcttttcaggcttactactattgatctgagcaaacaaaacttctctggtgaggtgccttctgagcttttggggttacccaatttacaagtcattgcattgcaagagaacaggttgtctggagacgttcctgaaggttttagtagcttgatgggtctgcattatttgaacctcagttcaaatgcattttctggtcacattccggagaattatggttttcttcggtcattggttgttctttcattgtccaacaatcacatttcaggaccaattccaccggagcttggaaactgctctaatcttcaagttctagagctgcaaatgaattccttgactggcaccattccagccgatctctctcgcctatcagtgttaaaggatcttgatttgggtagcaacaacttaacaggtagaatcccagaggaaatgtctaaatgctcatcattaactgctttgttgttggactccaatcatctctcaggtggtataccagactcgttgtctaagctattgaacctaactacactggatctctccaataacaatttgagcgggcaaattcctggtgatcttgcatctattcctggcctagtgaacttcaatgtctcaatgaataacctctacggtgagattccagtgacgcttggttctcggttcaacaatgcatcagacttttcagggaatcaaaacttatgtgggccgccattggaaaagaagtgcaaggatctagacaagaaagatagaaataagagactaattcttttgattgtgattgttgttagtggagcttgcctattagctttgtgctgctgcttctacattttcagcctcttgagatggcgcaaaaagctcaaacagggatcatctggagagaagactagaagcagtgcgagggcaagctcaggaactagtgagggccgtggaagcgctgataatggagtgccaaagcttgtcatgttcaacagcaaaatcacacttgcagagacaactgcagccacaaggcaattcgacgaagaaaatgtgctgagcagatcaccatatggcttggttttcaaggctagttatgaggatggtatggtgatgtccatccgtcgcctccccgatgcaacacttgatgaaaacatgttccgaaaagaagcagaatcactaggtagagtcaagcaccggaatttaacagttcttcgaggcttctatgccggtccacctgacctcaggcttctaatctatgactacatgcccaacggtaacctagccacccttctgcaagaagcatcacaccaagacggccatgtcctcaattggccaatgcgccatctcattgcacttggaattgctcgtggcttggcttttctacacacatcttcactggtacacggcgacgtgaagccacaaagcgtgctattcgatgcagatttcgaagcccatttgtctgatttcggcctagacaaactcacatcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

541

Amino Acids

58.64

Weight (kDa)

6.15

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36180
fragaria_vesca FvH4_5g31360
prunus_persica Prupe.7G166100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0226621
rosa_laevigata RLG00000001713
rosa_multiflora Rmu_co8455755.1_g000001 Rmu_sc0002043.1_g000006 Rmu_sc0004294.1_g000002
rosa_roxburghii Rroxscaffold_3G00232650
rosa_rugosa Rorug07G0238700
rosa_samantha Rh7AG386200 Rh7BG372900 Rh7CG405500 Rh7DG384900
rosa_wichuraiana Rw7G032420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1454
AccB1I GGYRCC 3 cut(s) 148, 220, 503
AccBSI CCGCTC 1 cut(s) 717
AccI GTMKAC 1 cut(s) 652
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 2 cut(s) 717, 866
AclWI GGATC 4 cut(s) 552, 702, 897, 1033
AcoI YGGCCR 2 cut(s) 1450, 1466
AcsI RAATTY 3 cut(s) 490, 723, 1333
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 1536
AfeI AGCGCT 1 cut(s) 1093
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 1287
AgsI TTSAA 8 cut(s) 334, 345, 470, 679, 766, 823, 1126, 1219
AhdI GACNNNNNGTC 1 cut(s) 664
AhlI ACTAGT 1 cut(s) 1073
AjiI CACGTC 1 cut(s) 1546
AjnI CCWGG 2 cut(s) 727, 748
Alw26I GTCTC 4 cut(s) 282, 775, 910, 1142
AlwI GGATC 4 cut(s) 552, 702, 897, 1033
Aor13HI TCCGGA 1 cut(s) 367
Aor51HI AGCGCT 1 cut(s) 1093
AoxI GGCC 6 cut(s) 751, 863, 1081, 1450, 1466, 1603
ApeKI GCWGC 4 cut(s) 481, 972, 975, 1157
ApoI RAATTY 3 cut(s) 490, 723, 1333
AspLEI GCGC 3 cut(s) 1008, 1094, 1476
AspS9I GGNCC 5 cut(s) 46, 431, 863, 1081, 1364
AsuHPI GGTGA 6 cut(s) 83, 227, 743, 803, 1191, 1255
AsuII TTCGAA 1 cut(s) 1581
AvaII GGWCC 3 cut(s) 46, 431, 1364
AxyI CCTNAGG 2 cut(s) 6, 1376
BalI TGGCCA 1 cut(s) 1468
BanI GGYRCC 3 cut(s) 148, 220, 503
BauI CACGAG 1 cut(s) 1500
BbsI GAAGAC 1 cut(s) 1046
BbvI GCAGC 4 cut(s) 468, 959, 962, 1169
BccI CCATC 6 cut(s) 89, 310, 996, 1229, 1259, 1485
BceAI ACGGC 3 cut(s) 1068, 1465, 1555
BciT130I CCWGG 2 cut(s) 729, 750
BcoDI GTCTC 4 cut(s) 282, 775, 910, 1142
BcuI ACTAGT 1 cut(s) 1073
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 1 cut(s) 1095
BisI GCNGC 5 cut(s) 482, 866, 973, 976, 1158
BlpI GCTNAGC 1 cut(s) 1190
BlsI GCNGC 5 cut(s) 483, 867, 974, 977, 1159
Bme1390I CCNGG 2 cut(s) 729, 750
Bme18I GGWCC 3 cut(s) 46, 431, 1364
BmeRI GACNNNNNGTC 1 cut(s) 664
BmgBI CACGTC 1 cut(s) 1546
BmgT120I GGNCC 5 cut(s) 46, 431, 863, 1081, 1364
BmiI GGNNCC 3 cut(s) 150, 222, 505
BmrFI CCNGG 2 cut(s) 729, 750
BmsI GCATC 5 cut(s) 749, 839, 1258, 1445, 1561
BpiI GAAGAC 1 cut(s) 1046
BpmI CTGGAG 2 cut(s) 306, 1053
Bpu10I CCTNAGC 1 cut(s) 1066
Bpu1102I GCTNAGC 1 cut(s) 1190
Bpu14I TTCGAA 1 cut(s) 1581
BpuEI CTTGAG 1 cut(s) 1018
BsaBI GATNNNNATC 1 cut(s) 1250
BsaJI CCNNGG 1 cut(s) 1084
BsaWI WCCGGW 3 cut(s) 367, 442, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 1361
Bse1I ACTGG 4 cut(s) 505, 696, 800, 1536
Bse21I CCTNAGG 2 cut(s) 6, 1376
Bse3DI GCAATG 4 cut(s) 136, 258, 263, 1482
Bse8I GATNNNNATC 1 cut(s) 1250
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 2 cut(s) 729, 750
BseDI CCNNGG 1 cut(s) 1084
BseGI GGATG 2 cut(s) 1240, 1251
BseJI GATNNNNATC 1 cut(s) 1250
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 4 cut(s) 136, 258, 263, 1482
BseMII CTCAG 9 cut(s) 64, 113, 185, 219, 352, 657, 1080, 1181, 1390
BseNI ACTGG 4 cut(s) 505, 696, 800, 1536
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 468, 959, 962, 1169
BshFI GGCC 6 cut(s) 753, 865, 1083, 1452, 1468, 1605
BshNI GGYRCC 3 cut(s) 148, 220, 503
BsiSI CCGG 4 cut(s) 368, 443, 1330, 1362
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 4 cut(s) 282, 775, 910, 1142
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 6 cut(s) 753, 865, 1083, 1452, 1468, 1605
Bsp119I TTCGAA 1 cut(s) 1581
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
Bsp1720I GCTNAGC 1 cut(s) 1190
BspACI CCGC 2 cut(s) 717, 866
BspANI GGCC 6 cut(s) 753, 865, 1083, 1452, 1468, 1605
BspCNI CTCAG 9 cut(s) 63, 114, 186, 220, 351, 656, 1079, 1182, 1389
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 150, 222, 505
BspMAI CTGCAG 1 cut(s) 1159
BspPI GGATC 4 cut(s) 552, 702, 897, 1033
BspT104I TTCGAA 1 cut(s) 1581
BspT107I GGYRCC 3 cut(s) 148, 220, 503
BsrBI CCGCTC 1 cut(s) 717
BsrDI GCAATG 4 cut(s) 136, 258, 263, 1482
BsrFI RCCGGY 1 cut(s) 1361
BsrI ACTGG 4 cut(s) 505, 696, 800, 1536
BssAI RCCGGY 1 cut(s) 1361
BssECI CCNNGG 1 cut(s) 1084
BssMI GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
BssNAI GTATAC 1 cut(s) 653
BssSI CACGAG 1 cut(s) 1500
Bst1107I GTATAC 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 1500
Bst2UI CCWGG 2 cut(s) 729, 750
Bst4CI ACNGT 3 cut(s) 791, 1342, 1409
BstBI TTCGAA 1 cut(s) 1581
BstC8I GCNNGC 4 cut(s) 719, 955, 1063, 1562
BstDSI CCRYGG 1 cut(s) 1084
BstEII GGTNACC 2 cut(s) 240, 1409
BstF5I GGATG 2 cut(s) 1240, 1251
BstH2I RGCGCY 1 cut(s) 1095
BstHHI GCGC 3 cut(s) 1008, 1094, 1476
BstKTI GATC 8 cut(s) 193, 520, 547, 697, 736, 892, 1028, 1199
BstMAI GTCTC 4 cut(s) 282, 775, 910, 1142
BstMBI GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
BstMWI GCNNNNNNNGC 3 cut(s) 229, 1012, 1089
BstNI CCWGG 2 cut(s) 729, 750
BstNSI RCATGY 2 cut(s) 1291, 1402
BstPI GGTNACC 2 cut(s) 240, 1409
BstSCI CCNGG 2 cut(s) 727, 748
BstSFI CTRYAG 1 cut(s) 1155
BstV1I GCAGC 4 cut(s) 468, 959, 962, 1169
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 3 cut(s) 544, 694, 889
BstYI RGATCY 3 cut(s) 544, 694, 889
BstZ17I GTATAC 1 cut(s) 653
Bsu36I CCTNAGG 2 cut(s) 6, 1376
BsuRI GGCC 6 cut(s) 753, 865, 1083, 1452, 1468, 1605
BtgI CCRYGG 1 cut(s) 1084
BtrI CACGTC 1 cut(s) 1546
BtsCI GGATG 2 cut(s) 1240, 1251
BtsI GCAGTG 1 cut(s) 1057
BtsIMutI CAGTG 6 cut(s) 58, 540, 689, 807, 1057, 1529
Cac8I GCNNGC 4 cut(s) 719, 955, 1063, 1562
CfoI GCGC 3 cut(s) 1008, 1094, 1476
Cfr10I RCCGGY 1 cut(s) 1361
Cfr13I GGNCC 5 cut(s) 46, 431, 863, 1081, 1364
CseI GACGC 1 cut(s) 814
Csp6I GTAC 1 cut(s) 1535
CviAII CATG 4 cut(s) 1120, 1288, 1399, 1454
CviQI GTAC 1 cut(s) 1535
DpnI GATC 8 cut(s) 192, 519, 546, 696, 735, 891, 1027, 1198
DpnII GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
DrdI GACNNNNNNGTC 1 cut(s) 1454
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 1454
EaeI YGGCCR 2 cut(s) 1450, 1466
Eam1105I GACNNNNNGTC 1 cut(s) 664
Eco47I GGWCC 3 cut(s) 46, 431, 1364
Eco47III AGCGCT 1 cut(s) 1093
Eco57I CTGAAG 1 cut(s) 318
Eco81I CCTNAGG 2 cut(s) 6, 1376
Eco91I GGTNACC 2 cut(s) 240, 1409
EcoO65I GGTNACC 2 cut(s) 240, 1409
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 727, 748
EcoT22I ATGCAT 2 cut(s) 352, 832
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 4 cut(s) 1123, 1291, 1402, 1457
FatI CATG 4 cut(s) 1119, 1287, 1398, 1453
FauI CCCGC 1 cut(s) 710
FauNDI CATATG 1 cut(s) 1204
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 5 cut(s) 482, 866, 973, 976, 1158
FokI GGATG 2 cut(s) 1238, 1247
Fsp4HI GCNGC 5 cut(s) 482, 866, 973, 976, 1158
GlaI GCGC 3 cut(s) 1007, 1093, 1475
GluI GCNGC 5 cut(s) 482, 866, 973, 976, 1158
GsuI CTGGAG 2 cut(s) 306, 1053
HaeII RGCGCY 1 cut(s) 1095
HaeIII GGCC 6 cut(s) 753, 865, 1083, 1452, 1468, 1605
HapII CCGG 4 cut(s) 368, 443, 1330, 1362
HgaI GACGC 1 cut(s) 814
HhaI GCGC 3 cut(s) 1008, 1094, 1476
Hin1II CATG 4 cut(s) 1123, 1291, 1402, 1457
Hin6I GCGC 3 cut(s) 1006, 1092, 1474
HinP1I GCGC 3 cut(s) 1006, 1092, 1474
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 9 cut(s) 100, 118, 579, 629, 659, 796, 847, 1307, 1320
HpaII CCGG 4 cut(s) 368, 443, 1330, 1362
HphI GGTGA 6 cut(s) 83, 227, 743, 803, 1191, 1255
Hpy166II GTNNAC 4 cut(s) 653, 760, 1367, 1537
Hpy188I TCNGA 6 cut(s) 123, 195, 229, 835, 1295, 1597
Hpy8I GTNNAC 4 cut(s) 653, 760, 1367, 1537
Hpy99I CGWCG 3 cut(s) 1178, 1260, 1547
HpyAV CCTTC 3 cut(s) 234, 293, 1433
HpyCH4III ACNGT 3 cut(s) 791, 1342, 1409
HpyCH4IV ACGT 2 cut(s) 291, 1545
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 1012, 1089
HpySE526I ACGT 2 cut(s) 291, 1545
Hsp92II CATG 4 cut(s) 1123, 1291, 1402, 1457
HspAI GCGC 3 cut(s) 1006, 1092, 1474
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
LmnI GCTCC 2 cut(s) 445, 950
Lsp1109I GCAGC 4 cut(s) 468, 959, 962, 1169
LweI GCATC 5 cut(s) 749, 839, 1258, 1445, 1561
MaeII ACGT 2 cut(s) 291, 1545
MaeIII GTNAC 4 cut(s) 240, 359, 802, 1409
MalI GATC 8 cut(s) 192, 519, 546, 696, 735, 891, 1027, 1198
MbiI CCGCTC 1 cut(s) 717
MboI GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
MboII GAAGA 6 cut(s) 377, 458, 1051, 1190, 1337, 1518
MfeI CAATTG 1 cut(s) 1462
MflI RGATCY 3 cut(s) 544, 694, 889
MlsI TGGCCA 1 cut(s) 1468
MluNI TGGCCA 1 cut(s) 1468
MlyI GAGTC 4 cut(s) 109, 623, 653, 1329
MmeI TCCRAC 2 cut(s) 438, 606
Mox20I TGGCCA 1 cut(s) 1468
Mph1103I ATGCAT 2 cut(s) 352, 832
MroI TCCGGA 1 cut(s) 367
MscI TGGCCA 1 cut(s) 1468
MseI TTAA 6 cut(s) 17, 107, 539, 569, 611, 1337
Msp20I TGGCCA 1 cut(s) 1468
MspI CCGG 4 cut(s) 368, 443, 1330, 1362
MspR9I CCNGG 2 cut(s) 729, 750
MunI CAATTG 1 cut(s) 1462
MvaI CCWGG 2 cut(s) 729, 750
MwoI GCNNNNNNNGC 3 cut(s) 229, 1012, 1089
NdeI CATATG 1 cut(s) 1204
NdeII GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
NlaIII CATG 4 cut(s) 1123, 1291, 1402, 1457
NlaIV GGNNCC 3 cut(s) 150, 222, 505
NmuCI GTSAC 2 cut(s) 359, 802
NsiI ATGCAT 2 cut(s) 352, 832
NspI RCATGY 2 cut(s) 1291, 1402
NspV TTCGAA 1 cut(s) 1581
PciI ACATGT 1 cut(s) 1287
PfeI GAWTC 5 cut(s) 118, 579, 796, 847, 1307
PkrI GCNGC 5 cut(s) 483, 867, 974, 977, 1159
PleI GAGTC 4 cut(s) 108, 623, 653, 1328
PpsI GAGTC 4 cut(s) 108, 623, 653, 1328
PscI ACATGT 1 cut(s) 1287
Psp6I CCWGG 2 cut(s) 727, 748
PspEI GGTNACC 2 cut(s) 240, 1409
PspGI CCWGG 2 cut(s) 727, 748
PspN4I GGNNCC 3 cut(s) 150, 222, 505
PspPI GGNCC 5 cut(s) 46, 431, 863, 1081, 1364
PstI CTGCAG 1 cut(s) 1159
PsuI RGATCY 3 cut(s) 544, 694, 889
RsaI GTAC 1 cut(s) 1536
RsaNI GTAC 1 cut(s) 1535
SaqAI TTAA 6 cut(s) 17, 107, 539, 569, 611, 1337
SatI GCNGC 5 cut(s) 482, 866, 973, 976, 1158
Sau3AI GATC 8 cut(s) 190, 517, 544, 694, 733, 889, 1025, 1196
Sau96I GGNCC 5 cut(s) 46, 431, 863, 1081, 1364
SchI GAGTC 4 cut(s) 109, 623, 653, 1329
ScrFI CCNGG 2 cut(s) 729, 750
SfaNI GCATC 5 cut(s) 749, 839, 1258, 1445, 1561
SfcI CTRYAG 1 cut(s) 1155
SfuI TTCGAA 1 cut(s) 1581
SinI GGWCC 3 cut(s) 46, 431, 1364
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
SpeI ACTAGT 1 cut(s) 1073
SsiI CCGC 2 cut(s) 717, 866
StyD4I CCNGG 2 cut(s) 727, 748
TaaI ACNGT 3 cut(s) 791, 1342, 1409
TaiI ACGT 2 cut(s) 294, 1548
TaqI TCGA 4 cut(s) 1173, 1348, 1569, 1581
TaqII GACCGA 1 cut(s) 378
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 118, 579, 796, 847, 1307
Tru1I TTAA 6 cut(s) 17, 107, 539, 569, 611, 1337
Tru9I TTAA 6 cut(s) 17, 107, 539, 569, 611, 1337
TscAI CASTG 6 cut(s) 58, 540, 696, 807, 1057, 1536
TseFI GTSAC 2 cut(s) 359, 802
TseI GCWGC 4 cut(s) 481, 972, 975, 1157
Tsp45I GTSAC 2 cut(s) 359, 802
TspDTI ATGAA 4 cut(s) 396, 503, 791, 1296
TspGWI ACGGA 1 cut(s) 1244
TspRI CASTG 6 cut(s) 58, 540, 696, 807, 1057, 1536
VpaK11BI GGWCC 3 cut(s) 46, 431, 1364
XapI RAATTY 3 cut(s) 490, 723, 1333
XbaI TCTAGA 2 cut(s) 475, 892
XceI RCATGY 2 cut(s) 1291, 1402
XmiI GTMKAC 1 cut(s) 652
Zsp2I ATGCAT 2 cut(s) 352, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.