Rorug07G0238700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015871
Physical Location & Seq
Forward (+)
21924841 .. 21931728
6888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0238700.1

Sequence Viewer

Length: 1089 bp
ATGCTTTCAATTTCAATCAGCCGTGCCCGAATTTTTCCAAGACATCCAAATCGGACGTTAAGTGGTGAGCTGGCAGTGACAAAGTCAGCGAGTGGGCCTACAGAAAGGGACGACTGGCTCCTCAACTGCGGCTCTTCCTCCAACGCCACCTTCTTCAGCCGTTTCTTCATCGGAGATTTCAATTTCAGGTCTGGTGTTGTCTCCACAGGCCGGCCTATTTCAGTCACGCACAACAAAATCCCACCTTCAAACTCACTCTTCTTACCACACAGCAAGAGTGTTCACAACTGCTGCAACCCTTCAAGCTATAGTTTAAGCATCAAGAAAATCGGAACTCACTTGAATTTCATTGTTGTTCTGTTTGCTTTTTGGAGGTTTGATGCGAAAAAGTGTGCAGCTGATTGTTTTAACGTTTCTACTGTTGAAGGTGGTACGCTGAAGGTCGAGCTCAGGCGTTTGACGACCATACCTCCAATACTAAGTTTGATTGTGGTGGTTCTTCTTCTTCCAAGGCTTTTCCGAACCCAAAGCATTCTTGATTATGATTTGTATACTTACAAATTCAGAACAATATTGGGCTGCGATCCAAGACCCAGAGGGATGACATTAAAGAAAGATCAGTTCTCGATGATCAGAGCGCATGCGGATAGAGGTAGTAAAGGCAAGAGTCTGGGCAACAAGGTTGCTGTCATCAAGAGGTGCTCCAGCTGCGGCAAGAGCATCAGCAACTGTCTTGATTGGCTACAGATAGTCGGTGATGGAGAGGCTACCCTTTTGAATGGTCTGAATCCGTCGGTTCATAGGATCTGGTCAAGGCAGCAAATTGGCTCCGGTCCTTCAGTGATATCCATCGTGTCTGCACATCCAGGAGTTTTTGGCTTAGCTTTCCAGGTTGGTGTATCAACATGGTGTCTATGCTCAACCTTTGGGGATTATATTACAATTATCACCAGTTTTATCCAGCAGTCAAGTTTAGTTGAATTTTCTACTGTATCCATGTTCAAGCCTTTGGGGATTGTAGTTACAGTTGCCAATAGTTTTGCATTGAAACCTACTATTGCTCTTTTGACTCAGAAAATCCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

362

Amino Acids

39.77

Weight (kDa)

9.9

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36180
fragaria_vesca FvH4_5g31360
prunus_persica Prupe.7G166100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0226621
rosa_laevigata RLG00000001713
rosa_multiflora Rmu_co8455755.1_g000001 Rmu_sc0002043.1_g000006 Rmu_sc0004294.1_g000002
rosa_roxburghii Rroxscaffold_3G00232650
rosa_rugosa Rorug07G0238700
rosa_samantha Rh7AG386200 Rh7BG372900 Rh7CG405500 Rh7DG384900
rosa_wichuraiana Rw7G032420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 551
AciI CCGC 3 cut(s) 129, 644, 711
AclI AACGTT 1 cut(s) 411
AclWI GGATC 2 cut(s) 578, 812
AcsI RAATTY 4 cut(s) 30, 343, 560, 980
AcuI CTGAAG 3 cut(s) 139, 458, 822
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 210
AjnI CCWGG 2 cut(s) 865, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 6 cut(s) 70, 306, 398, 448, 708, 884
AluI AGCT 6 cut(s) 70, 306, 398, 448, 708, 884
Alw21I GWGCWC 2 cut(s) 450, 704
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 2 cut(s) 578, 812
AlwNI CAGNNNCTG 1 cut(s) 729
AoxI GGCC 3 cut(s) 95, 208, 212
ApeKI GCWGC 5 cut(s) 291, 395, 579, 708, 817
ApoI RAATTY 4 cut(s) 30, 343, 560, 980
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 95, 833
AsuHPI GGTGA 3 cut(s) 77, 767, 940
AvaII GGWCC 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 450, 704
BbvI GCAGC 5 cut(s) 278, 407, 566, 695, 829
BccI CCATC 2 cut(s) 752, 857
BceAI ACGGC 2 cut(s) 6, 144
BciT130I CCWGG 2 cut(s) 867, 890
BciVI GTATCC 1 cut(s) 1003
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 205
BfmI CTRYAG 3 cut(s) 99, 307, 743
BfuI GTATCC 1 cut(s) 1003
BisI GCNGC 7 cut(s) 130, 292, 396, 580, 709, 712, 818
BlpI GCTNAGC 1 cut(s) 880
BlsI GCNGC 7 cut(s) 131, 293, 397, 581, 710, 713, 819
Bme1390I CCNGG 2 cut(s) 867, 890
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 2 cut(s) 95, 833
BmiI GGNNCC 2 cut(s) 119, 829
BmrFI CCNGG 2 cut(s) 867, 890
BmsI GCATC 3 cut(s) 327, 370, 729
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 880
BsaBI GATNNNNATC 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 830
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 119, 951
Bse8I GATNNNNATC 1 cut(s) 848
BseBI CCWGG 2 cut(s) 867, 890
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 3 cut(s) 43, 606, 862
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 463, 1085
BseNI ACTGG 2 cut(s) 119, 951
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 5 cut(s) 278, 407, 566, 695, 829
BsgI GTGCAG 2 cut(s) 414, 843
BshFI GGCC 3 cut(s) 97, 210, 214
BsiHKAI GWGCWC 2 cut(s) 450, 704
BsiSI CCGG 2 cut(s) 211, 831
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 3 cut(s) 97, 210, 214
Bsp1286I GDGCHC 3 cut(s) 28, 450, 704
Bsp143I GATC 4 cut(s) 583, 616, 630, 804
Bsp1720I GCTNAGC 1 cut(s) 880
BspACI CCGC 3 cut(s) 129, 644, 711
BspANI GGCC 3 cut(s) 97, 210, 214
BspCNI CTCAG 2 cut(s) 462, 1084
BspLI GGNNCC 2 cut(s) 119, 829
BspPI GGATC 2 cut(s) 578, 812
BspQI GCTCTTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 2 cut(s) 119, 951
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 4 cut(s) 583, 616, 630, 804
BssNAI GTATAC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 509
Bst1107I GTATAC 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 867, 890
Bst4CI ACNGT 4 cut(s) 421, 731, 991, 1027
Bst6I CTCTTC 2 cut(s) 139, 263
BstC8I GCNNGC 3 cut(s) 72, 212, 642
BstDEI CTNAG 4 cut(s) 449, 479, 880, 1071
BstF5I GGATG 3 cut(s) 43, 606, 862
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 4 cut(s) 586, 619, 633, 807
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 4 cut(s) 583, 616, 630, 804
BstMWI GCNNNNNNNGC 2 cut(s) 708, 717
BstNI CCWGG 2 cut(s) 867, 890
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 865, 888
BstSFI CTRYAG 3 cut(s) 99, 307, 743
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 5 cut(s) 278, 407, 566, 695, 829
BstX2I RGATCY 1 cut(s) 804
BstYI RGATCY 1 cut(s) 804
BstZ17I GTATAC 1 cut(s) 552
BsuI GTATCC 1 cut(s) 1003
BsuRI GGCC 3 cut(s) 97, 210, 214
BtsCI GGATG 3 cut(s) 43, 606, 862
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 846
Cac8I GCNNGC 3 cut(s) 72, 212, 642
CaiI CAGNNNCTG 1 cut(s) 729
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 95, 833
Csp6I GTAC 1 cut(s) 432
CviAII CATG 3 cut(s) 641, 906, 997
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 4 cut(s) 449, 479, 880, 1071
DpnI GATC 4 cut(s) 585, 618, 632, 806
DpnII GATC 4 cut(s) 583, 616, 630, 804
Eam1104I CTCTTC 2 cut(s) 139, 263
EarI CTCTTC 2 cut(s) 139, 263
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 450
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 833
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 3 cut(s) 139, 458, 822
EcoICRI GAGCTC 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 865, 888
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 3 cut(s) 644, 909, 1000
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 640, 905, 996
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 7 cut(s) 130, 292, 396, 580, 709, 712, 818
FokI GGATG 3 cut(s) 30, 613, 849
FriOI GRGCYC 1 cut(s) 450
FseI GGCCGGCC 1 cut(s) 214
Fsp4HI GCNGC 7 cut(s) 130, 292, 396, 580, 709, 712, 818
GlaI GCGC 1 cut(s) 639
GluI GCNGC 7 cut(s) 130, 292, 396, 580, 709, 712, 818
GsuI CTGGAG 1 cut(s) 688
HaeIII GGCC 3 cut(s) 97, 210, 214
HapII CCGG 2 cut(s) 211, 831
HhaI GCGC 1 cut(s) 640
Hin1II CATG 3 cut(s) 644, 909, 1000
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HinfI GANTC 3 cut(s) 667, 787, 1069
HpaII CCGG 2 cut(s) 211, 831
HphI GGTGA 3 cut(s) 77, 767, 940
Hpy166II GTNNAC 2 cut(s) 283, 552
Hpy188I TCNGA 8 cut(s) 54, 173, 332, 521, 566, 635, 786, 1074
Hpy188III TCNNGA 6 cut(s) 322, 536, 625, 694, 734, 1081
Hpy8I GTNNAC 2 cut(s) 283, 552
Hpy99I CGWCG 1 cut(s) 796
HpyAV CCTTC 6 cut(s) 160, 255, 309, 419, 433, 846
HpyCH4III ACNGT 4 cut(s) 421, 731, 991, 1027
HpyCH4IV ACGT 2 cut(s) 56, 411
HpyCH4V TGCA 4 cut(s) 294, 395, 860, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 708, 717
HpyF3I CTNAG 4 cut(s) 449, 479, 880, 1071
HpySE526I ACGT 2 cut(s) 56, 411
Hsp92II CATG 3 cut(s) 644, 909, 1000
HspAI GCGC 1 cut(s) 638
KroI GCCGGC 1 cut(s) 210
KroNI GCCGGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 583, 616, 630, 804
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 123, 707, 833
Lsp1109I GCAGC 5 cut(s) 278, 407, 566, 695, 829
LweI GCATC 3 cut(s) 327, 370, 729
MaeII ACGT 2 cut(s) 56, 411
MaeIII GTNAC 3 cut(s) 76, 223, 1021
MalI GATC 4 cut(s) 585, 618, 632, 806
MboI GATC 4 cut(s) 583, 616, 630, 804
MboII GAAGA 7 cut(s) 126, 145, 157, 250, 491, 494, 497
MflI RGATCY 1 cut(s) 804
MhlI GDGCHC 3 cut(s) 28, 450, 704
MluCI AATT 8 cut(s) 9, 30, 181, 343, 560, 822, 942, 980
MlyI GAGTC 2 cut(s) 676, 1063
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 131, 148, 366, 480, 590, 644, 690, 757
MroNI GCCGGC 1 cut(s) 210
MseI TTAA 4 cut(s) 59, 314, 408, 608
MspA1I CMGCKG 2 cut(s) 398, 708
MspI CCGG 2 cut(s) 211, 831
MspR9I CCNGG 2 cut(s) 867, 890
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 867, 890
MwoI GCNNNNNNNGC 2 cut(s) 708, 717
NaeI GCCGGC 1 cut(s) 212
NdeII GATC 4 cut(s) 583, 616, 630, 804
NgoMIV GCCGGC 1 cut(s) 210
NlaIII CATG 3 cut(s) 644, 909, 1000
NlaIV GGNNCC 2 cut(s) 119, 829
NmuCI GTSAC 2 cut(s) 76, 223
NspI RCATGY 1 cut(s) 644
PaeI GCATGC 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 139
PctI GAATGC 1 cut(s) 531
PdiI GCCGGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 787
PflFI GACNNNGTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 7 cut(s) 131, 293, 397, 581, 710, 713, 819
PleI GAGTC 2 cut(s) 675, 1063
PpsI GAGTC 2 cut(s) 675, 1063
Psp124BI GAGCTC 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 865, 888
PspGI CCWGG 2 cut(s) 865, 888
PspN4I GGNNCC 2 cut(s) 119, 829
PspPI GGNCC 2 cut(s) 95, 833
PstNI CAGNNNCTG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 804
PsyI GACNNNGTC 1 cut(s) 82
PvuII CAGCTG 2 cut(s) 398, 708
RigI GGCCGGCC 1 cut(s) 214
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SacI GAGCTC 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 4 cut(s) 59, 314, 408, 608
SatI GCNGC 7 cut(s) 130, 292, 396, 580, 709, 712, 818
Sau3AI GATC 4 cut(s) 583, 616, 630, 804
Sau96I GGNCC 2 cut(s) 95, 833
SchI GAGTC 2 cut(s) 676, 1063
ScrFI CCNGG 2 cut(s) 867, 890
SduI GDGCHC 3 cut(s) 28, 450, 704
SfaNI GCATC 3 cut(s) 327, 370, 729
SfcI CTRYAG 3 cut(s) 99, 307, 743
SinI GGWCC 1 cut(s) 833
SphI GCATGC 1 cut(s) 644
Sse9I AATT 8 cut(s) 9, 30, 181, 343, 560, 822, 942, 980
SsiI CCGC 3 cut(s) 129, 644, 711
SspI AATATT 1 cut(s) 573
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 865, 888
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 421, 731, 991, 1027
TaiI ACGT 2 cut(s) 59, 414
TaqI TCGA 2 cut(s) 444, 626
TasI AATT 8 cut(s) 9, 30, 181, 343, 560, 822, 942, 980
TauI GCSGC 2 cut(s) 132, 714
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 4 cut(s) 59, 314, 408, 608
Tru9I TTAA 4 cut(s) 59, 314, 408, 608
TscAI CASTG 2 cut(s) 81, 846
TseFI GTSAC 2 cut(s) 76, 223
TseI GCWGC 5 cut(s) 291, 395, 579, 708, 817
Tsp45I GTSAC 2 cut(s) 76, 223
TspDTI ATGAA 3 cut(s) 157, 337, 788
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 2 cut(s) 81, 846
Tth111I GACNNNGTC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 4 cut(s) 30, 343, 560, 980
XceI RCATGY 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.