Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8489967.1

Orthogroup ID

OG0007727

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2262

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8489967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1267 bp

atgttttgccttactgctcttgtaggttgctactttgctttgaaggtgtggaatgctcaagaggcaggagctacagccgttttagtggctgacaatgttgaagagcctctaattacaatggactccccagaggagagcaatgatgcagatggttacatagagaagattggaattccatcagctttgatagagaaatcatttggtgacagcttgaaggatgctgtgaaaaacagtgaagatgttgtggtgaaactcgactggagagagtcagtgccccatcctgataaaagagttgagtatgagttctggacaaacagcaatgacgaatgcggggctcgctgtgatgagcaaatgaattttgtgaaaaatttcaagggtcatgctcagattcttgagaaagggggttacaccctcttcactccacactatataacttggtattgccctaaggcttttgtccttaccgctcaatgcaagtctcaatgcataaaccgggggagatactgtgcaccagatccggagaaagattttggagaaggataccaagggaaggatgtggtatttgagaacttgaggcagctttgtgtgcatagagttgccgaggagagaaaccggtcatgggtctggtgggattatgtgacagacttccatatcagatgttccatgaaagaaaagcgttacagtaaagaatgcgctgaggatgtcatgaaatcacttgatttgcctattgacaagattaaaaaatgcatgggcaatcctgaagatgatgtggagaatgaagtgcttaaagctgaacaagaaatccaggttggtcgaggatctcgtggtgatgttaccatcttgccaacattggtgattaacaatgttcaatatcgaggaaaactggaacgaactggtgtcctaaaggcactgtgtgctggattcaaggagacaactgaacctcaaatttgtttgaacggagatcttgaaacaaatgagtgtctagagaggaatggtggctgttggctggacaaccggagtaatttaactgcttgcaaggacacttttaggggaagagtttgtgagtgccctgtagtggatggtgttcaatataaaggcgatggttatatgtcttgtgctgcttttggaccagcaaggtgcacgattgacaatggaggttgctggtcagaatatagaaatggattaactatatctgcttgctcaaattccgagttatctggctgcaagtgtccacaaggatttaaaggggatggccatcattgcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

422

Amino Acids

47.39

Weight (kDa)

5.08

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30900 AT2G34940 AT4G20110 AT4G20110
fragaria_vesca	FvH4_3g13190 FvH4_3g13190
malus_domestica	MD05G1244500.v1.1 MD10G1226100.v1.1
prunus_persica	Prupe.4G119200_v2.0.a1 Prupe.4G119200_v2.0.a1 Prupe.4G119200_v2.0.a1
pyrus_communis	pycom05g22100 pycom10g19000
rosa_chinensis	RchiOBHm_Chr5g0021401
rosa_laevigata	RLG00000032610
rosa_multiflora	Rmu_co8489967.1_g000001 Rmu_sc0004847.1_g000021
rosa_roxburghii	Rroxscaffold_1G00057140
rosa_rugosa	Rorug05G0067000
rosa_samantha	Rh5AG156100 Rh5BG155600 Rh5CG169300 Rh5DG156100
rosa_wichuraiana	Rw5G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	2 cut(s)	330, 465
AclWI	GGATC	2 cut(s)	509, 826
AcoI	YGGCCR	1 cut(s)	1252
AcsI	RAATTY	5 cut(s)	171, 355, 367, 945, 1204
AcuI	CTGAAG	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	914
AfiI	CCNNNNNNNGG	3 cut(s)	550, 619, 1075
AgeI	ACCGGT	1 cut(s)	612
AgsI	TTSAA	9 cut(s)	43, 101, 214, 373, 869, 925, 955, 968, 1088
AjnI	CCWGG	1 cut(s)	804
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AloI	GAACNNNNNNTCC	2 cut(s)	786, 818
AluBI	AGCT	5 cut(s)	71, 182, 210, 580, 791
AluI	AGCT	5 cut(s)	71, 182, 210, 580, 791
Alw21I	GWGCWC	2 cut(s)	511, 1142
Alw26I	GTCTC	2 cut(s)	483, 923
Alw44I	GTGCAC	2 cut(s)	507, 1138
AlwI	GGATC	2 cut(s)	509, 826
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	1 cut(s)	1252
ApaLI	GTGCAC	2 cut(s)	507, 1138
ApeKI	GCWGC	3 cut(s)	577, 1118, 1221
ApoI	RAATTY	5 cut(s)	171, 355, 367, 945, 1204
AsiGI	ACCGGT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	1127
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	4 cut(s)	215, 259, 839, 865
AvaII	GGWCC	1 cut(s)	1127
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	4 cut(s)	276, 511, 1070, 1142
BalI	TGGCCA	1 cut(s)	1254
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	511, 1142
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	589, 1105, 1208
BccI	CCATC	8 cut(s)	143, 184, 285, 845, 1073, 1094, 1244, 1263
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	806
BciVI	GTATCC	1 cut(s)	533
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	483, 923
BfaI	CTAG	1 cut(s)	983
BfmI	CTRYAG	2 cut(s)	72, 1071
BfuI	GTATCC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	3 cut(s)	578, 1119, 1222
BlsI	GCNGC	3 cut(s)	579, 1120, 1223
Bme1390I	CCNGG	2 cut(s)	494, 806
Bme18I	GGWCC	1 cut(s)	1127
BmgT120I	GGNCC	1 cut(s)	1127
BmrFI	CCNGG	2 cut(s)	494, 806
BmsI	GCATC	2 cut(s)	133, 208
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	42, 413, 592
BpuMI	CCSGG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	1254
BsaJI	CCNNGG	3 cut(s)	493, 544, 600
BsaWI	WCCGGW	3 cut(s)	517, 612, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	550, 619, 1075
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	3 cut(s)	263, 888, 898
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	3 cut(s)	145, 325, 1258
Bse8I	GATNNNNATC	1 cut(s)	1254
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	493, 544, 600
BseGI	GGATG	6 cut(s)	223, 277, 559, 706, 1084, 1255
BseJI	GATNNNNATC	1 cut(s)	1254
BseLI	CCNNNNNNNGG	3 cut(s)	550, 619, 1075
BseMI	GCAATG	3 cut(s)	145, 325, 1258
BseMII	CTCAG	2 cut(s)	398, 687
BseNI	ACTGG	3 cut(s)	263, 888, 898
BseRI	GAGGAG	2 cut(s)	146, 617
BseSI	GKGCMC	4 cut(s)	276, 511, 1070, 1142
BseXI	GCAGC	3 cut(s)	589, 1105, 1208
BshFI	GGCC	1 cut(s)	1254
BshTI	ACCGGT	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	511, 1142
BsiSI	CCGG	4 cut(s)	493, 518, 613, 1015
BslI	CCNNNNNNNGG	3 cut(s)	550, 619, 1075
BsmAI	GTCTC	2 cut(s)	483, 923
BsmI	GAATGC	3 cut(s)	58, 332, 695
BsnI	GGCC	1 cut(s)	1254
Bsp1286I	GDGCHC	5 cut(s)	276, 337, 511, 1070, 1142
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	514, 818, 961
BspACI	CCGC	2 cut(s)	330, 465
BspANI	GGCC	1 cut(s)	1254
BspCNI	CTCAG	2 cut(s)	397, 688
BspEI	TCCGGA	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	705
BspPI	GGATC	2 cut(s)	509, 826
BspQI	GCTCTTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	467
BsrDI	GCAATG	3 cut(s)	145, 325, 1258
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	263, 888, 898
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	493, 544, 600
BssMI	GATC	3 cut(s)	514, 818, 961
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	544
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	4 cut(s)	233, 506, 683, 912
Bst6I	CTCTTC	3 cut(s)	96, 419, 1048
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	337, 1033, 1198
BstDEI	CTNAG	3 cut(s)	384, 447, 696
BstF5I	GGATG	6 cut(s)	223, 277, 559, 706, 1084, 1255
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	3 cut(s)	517, 821, 964
BstMAI	GTCTC	2 cut(s)	483, 923
BstMBI	GATC	3 cut(s)	514, 818, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 336, 586, 914, 1260
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	492, 804
BstSFI	CTRYAG	2 cut(s)	72, 1071
BstSLI	GKGCMC	4 cut(s)	276, 511, 1070, 1142
BstV1I	GCAGC	3 cut(s)	589, 1105, 1208
BstX2I	RGATCY	3 cut(s)	514, 818, 961
BstYI	RGATCY	3 cut(s)	514, 818, 961
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	1254
BtgZI	GCGATG	1 cut(s)	1113
BtsCI	GGATG	6 cut(s)	223, 277, 559, 706, 1084, 1255
BtsIMutI	CAGTG	3 cut(s)	238, 276, 908
Cac8I	GCNNGC	3 cut(s)	337, 1033, 1198
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	1127
CspAI	ACCGGT	1 cut(s)	612
CviAII	CATG	5 cut(s)	380, 618, 664, 706, 748
DdeI	CTNAG	3 cut(s)	384, 447, 696
DpnI	GATC	3 cut(s)	516, 820, 963
DpnII	GATC	3 cut(s)	514, 818, 961
DraI	TTTAAA	1 cut(s)	1243
DraIII	CACNNNGTG	1 cut(s)	914
EaeI	YGGCCR	1 cut(s)	1252
Eam1104I	CTCTTC	3 cut(s)	96, 419, 1048
EarI	CTCTTC	3 cut(s)	96, 419, 1048
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	1127
Eco57I	CTGAAG	1 cut(s)	780
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	2 cut(s)	488, 749
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	5 cut(s)	383, 621, 667, 709, 751
FatI	CATG	5 cut(s)	379, 617, 663, 705, 747
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	3 cut(s)	578, 1119, 1222
FokI	GGATG	6 cut(s)	230, 264, 566, 713, 1091, 1262
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	578, 1119, 1222
FspBI	CTAG	1 cut(s)	983
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	3 cut(s)	578, 1119, 1222
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	1254
HapII	CCGG	4 cut(s)	493, 518, 613, 1015
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	5 cut(s)	383, 621, 667, 709, 751
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	4 cut(s)	122, 266, 388, 921
HpaII	CCGG	4 cut(s)	493, 518, 613, 1015
HphI	GGTGA	4 cut(s)	215, 259, 839, 865
Hpy166II	GTNNAC	3 cut(s)	509, 1140, 1232
Hpy188I	TCNGA	4 cut(s)	387, 656, 1168, 1210
Hpy188III	TCNNGA	9 cut(s)	59, 281, 307, 392, 518, 706, 758, 965, 983
Hpy8I	GTNNAC	3 cut(s)	509, 1140, 1232
HpyAV	CCTTC	4 cut(s)	37, 208, 530, 544
HpyCH4III	ACNGT	4 cut(s)	233, 506, 683, 912
HpyCH4V	TGCA	9 cut(s)	146, 474, 486, 509, 589, 747, 1035, 1140, 1224
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 336, 586, 914, 1260
HpyF3I	CTNAG	3 cut(s)	384, 447, 696
Hsp92II	CATG	5 cut(s)	383, 621, 667, 709, 751
HspAI	GCGC	1 cut(s)	693
Kpn2I	TCCGGA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	514, 818, 961
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	3 cut(s)	589, 1105, 1208
LweI	GCATC	2 cut(s)	133, 208
MaeI	CTAG	1 cut(s)	983
MaeIII	GTNAC	6 cut(s)	152, 203, 404, 637, 677, 832
MalI	GATC	3 cut(s)	516, 820, 963
MbiI	CCGCTC	1 cut(s)	467
MboI	GATC	3 cut(s)	514, 818, 961
MboII	GAAGA	6 cut(s)	113, 175, 248, 406, 773, 1065
MflI	RGATCY	3 cut(s)	514, 818, 961
MhlI	GDGCHC	5 cut(s)	276, 337, 511, 1070, 1142
MlsI	TGGCCA	1 cut(s)	1254
MluCI	AATT	7 cut(s)	111, 171, 355, 367, 945, 1021, 1204
MluNI	TGGCCA	1 cut(s)	1254
MlyI	GAGTC	2 cut(s)	116, 275
Mox20I	TGGCCA	1 cut(s)	1254
Mph1103I	ATGCAT	2 cut(s)	488, 749
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	1254
MseI	TTAA	6 cut(s)	738, 786, 858, 1025, 1184, 1242
Msp20I	TGGCCA	1 cut(s)	1254
MspI	CCGG	4 cut(s)	493, 518, 613, 1015
MspR9I	CCNGG	2 cut(s)	494, 806
Mva1269I	GAATGC	3 cut(s)	58, 332, 695
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	5 cut(s)	62, 336, 586, 914, 1260
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	3 cut(s)	514, 818, 961
NlaIII	CATG	5 cut(s)	383, 621, 667, 709, 751
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	203, 637
NsiI	ATGCAT	2 cut(s)	488, 749
PagI	TCATGA	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	820
PctI	GAATGC	3 cut(s)	58, 332, 695
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	388, 921
PinAI	ACCGGT	1 cut(s)	612
PkrI	GCNGC	3 cut(s)	579, 1120, 1223
PleI	GAGTC	2 cut(s)	116, 274
PpsI	GAGTC	2 cut(s)	116, 274
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspPI	GGNCC	1 cut(s)	1127
PsuI	RGATCY	3 cut(s)	514, 818, 961
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	6 cut(s)	738, 786, 858, 1025, 1184, 1242
SatI	GCNGC	3 cut(s)	578, 1119, 1222
Sau3AI	GATC	3 cut(s)	514, 818, 961
Sau96I	GGNCC	1 cut(s)	1127
SchI	GAGTC	2 cut(s)	116, 275
ScrFI	CCNGG	2 cut(s)	494, 806
SduI	GDGCHC	5 cut(s)	276, 337, 511, 1070, 1142
SfaNI	GCATC	2 cut(s)	133, 208
SfcI	CTRYAG	2 cut(s)	72, 1071
SinI	GGWCC	1 cut(s)	1127
SmlI	CTYRAG	3 cut(s)	57, 392, 571
SmoI	CTYRAG	3 cut(s)	57, 392, 571
Sse9I	AATT	7 cut(s)	111, 171, 355, 367, 945, 1021, 1204
SsiI	CCGC	2 cut(s)	330, 465
SspMI	CTAG	1 cut(s)	983
StyD4I	CCNGG	2 cut(s)	492, 804
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	4 cut(s)	233, 506, 683, 912
TaqI	TCGA	3 cut(s)	255, 814, 874
TasI	AATT	7 cut(s)	111, 171, 355, 367, 945, 1021, 1204
TfiI	GAWTC	2 cut(s)	388, 921
Tru1I	TTAA	6 cut(s)	738, 786, 858, 1025, 1184, 1242
Tru9I	TTAA	6 cut(s)	738, 786, 858, 1025, 1184, 1242
TscAI	CASTG	3 cut(s)	238, 276, 915
TseFI	GTSAC	2 cut(s)	203, 637
TseI	GCWGC	3 cut(s)	577, 1118, 1221
Tsp45I	GTSAC	2 cut(s)	203, 637
TspDTI	ATGAA	4 cut(s)	368, 680, 722, 792
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	3 cut(s)	238, 276, 915
VneI	GTGCAC	2 cut(s)	507, 1138
VpaK11BI	GGWCC	1 cut(s)	1127
XapI	RAATTY	5 cut(s)	171, 355, 367, 945, 1204
XbaI	TCTAGA	1 cut(s)	982
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	983
Zsp2I	ATGCAT	2 cut(s)	488, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.