Rh5AG156100

Vacuolar-sorting receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
16417352 .. 16422307
4956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG156100.1

Sequence Viewer

Length: 1485 bp
ATGGATTTGTCAGCGAAGTTTACATTTTTACTCGTGGTATTGGCTGTTCTTGAACAACATGTTGTTTATGGACGGTTTGTGGTGGAGACGGGTAGTATTAAAGTTCTGTATCCAATGACTCTGAGGGGTAATCATGATGGTGCTATTGGAAACTTTGGTCTGCCGGACTATGGAGGCTCCTTAGTGGGTACTGTGGTGTATCCTGAGAAAGGGTCTACTGGGTGTGAAGCTTTTGAGGGTGATAAGCCTTTCAAGTCTCAGAAGTCTCGCCCCAGTATTGTTGTTCTTGATCGTGGTGGTTGCTACTTTGCTTTGAAGGTGTGGAATGCTCAAGAGGCAGGAGCTACAGCCGTTTTAGTGGCTGACAATGTTGAAGAGCCTCTAATTACAATGGACTCCCCAGAGGAGAGCAATGATGCAGATGGTTACATAGAGAAGATTGGAATTCCATCAGCTTTGATAGAGAAATCATTTGGTGACAGCTTGAAGGATGCTGTGAAAAACAGTGAAGATGTTGTGGTGAAACTCGACTGGAGAGAGTCAGTGCCCCATCCTGATAAAAGAGTTGAGTATGAGTTCTGGACAAACAGCAATGACGAATGCGGGGCTCGCTGTGATGAGCAAATGAGTTTTGTGAAAAATTTCAAGGGTCATGCTCAGATTCTTGAGAAAGGGGGTTACACCCTCTTCACTCCACACTATATAACTTGGTATTGCCCTAAGGCTTTTGTCCTTACCGCTCAATGCAAGTCTCAATGCATAAACCGGGGGAGATACTGTGCACCAGATCCGGAGAAAGATTTTGGAGAAGGATACCAAGGGAAGGATGTGGTATTTGAGAACTTGAGGCAGCTTTGTGTGCATAGAGTTGCCGAGGAGAGAAACCGGTCATGGGTCTGGTGGGATTATGTGACAGACTTCCATATCAGATGTTCCATGAAAGAAAAGCGTTACAGTAAAGAATGCGCTGAGGATGTCATGAAATCACTTGATTTGCCTATTGACAAGATTAAAAAATGCATGGGCAATCCTGAAGATGATGTGGAGAATGAAGTGCTTAAAGCTGAACAAGAAATCCAGGTTGGTCGAGGATCTCGTGGTGATGTTACCATCTTGCCAACATTGGTGATTAACAATGTTCAATATCGAGGAAAACTGGAACGAACTGGTGTCCTAAAGGCACTGTGTGCTGGATTCAAGGAGACAACTGAACCTCAAATTTGTTTGAACGGAGATCTTGAAACAAATGAGTGTCTAGAGAGGAATGGTGGCTGTTGGCTGGACAACCGGAGTAATTTAACTGCTTGCAAGGACACTTTTAGGGGAAGAGTTTGTGAGTGCCCTGTAGTGGATGGTGTTCAATATAAAGGCGATGGTTATATGTCTTGTGCTGCTTTTGGACCAGCAAGGTGCACGATTGACAATGGAGGTTGCTGGTCAGAATATAGAAATGGATTAACTATATCTGCTTGCTCAGTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

55.16

Weight (kDa)

5.16

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 63 - 162 3.5e-17 PA domain
VSR_TRX PF25011 189 - 396 1.6e-102 Vacuolar sorting receptor thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 790
AciI CCGC 2 cut(s) 603, 738
AclWI GGATC 2 cut(s) 782, 1099
AcsI RAATTY 3 cut(s) 444, 640, 1218
AcuI CTGAAG 1 cut(s) 1053
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 5 cut(s) 170, 209, 823, 892, 1348
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 885
AjnI CCWGG 1 cut(s) 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AloI GAACNNNNNNTCC 2 cut(s) 1059, 1091
AluBI AGCT 6 cut(s) 230, 344, 455, 483, 853, 1064
AluI AGCT 6 cut(s) 230, 344, 455, 483, 853, 1064
Alw21I GWGCWC 2 cut(s) 784, 1415
Alw26I GTCTC 5 cut(s) 80, 261, 270, 756, 1196
Alw44I GTGCAC 2 cut(s) 780, 1411
AlwI GGATC 2 cut(s) 782, 1099
Aor13HI TCCGGA 1 cut(s) 790
ApaLI GTGCAC 2 cut(s) 780, 1411
ApeKI GCWGC 2 cut(s) 850, 1391
ApoI RAATTY 3 cut(s) 444, 640, 1218
AsiGI ACCGGT 1 cut(s) 885
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 1 cut(s) 1400
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 5 cut(s) 251, 488, 532, 1112, 1138
AvaII GGWCC 1 cut(s) 1400
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 4 cut(s) 549, 784, 1343, 1415
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanII GRGCYC 1 cut(s) 610
BauI CACGAG 2 cut(s) 32, 1095
Bbv12I GWGCWC 2 cut(s) 784, 1415
BbvCI CCTCAGC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 862, 1378
BccI CCATC 7 cut(s) 131, 416, 457, 558, 1118, 1346, 1367
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 1079
BciVI GTATCC 3 cut(s) 120, 210, 806
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 5 cut(s) 80, 261, 270, 756, 1196
BfaI CTAG 1 cut(s) 1256
BfmI CTRYAG 2 cut(s) 345, 1344
BfuI GTATCC 3 cut(s) 120, 210, 806
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 2 cut(s) 851, 1392
BlsI GCNGC 2 cut(s) 852, 1393
Bme1390I CCNGG 2 cut(s) 767, 1079
Bme18I GGWCC 1 cut(s) 1400
BmgT120I GGNCC 1 cut(s) 1400
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 767, 1079
BmrI ACTGGG 2 cut(s) 228, 267
BmsI GCATC 2 cut(s) 406, 481
BmuI ACTGGG 2 cut(s) 228, 267
BpmI CTGGAG 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 969
BpuEI CTTGAG 3 cut(s) 315, 686, 865
BpuMI CCSGG 1 cut(s) 767
BsaJI CCNNGG 3 cut(s) 766, 817, 873
BsaWI WCCGGW 3 cut(s) 790, 885, 1287
BsaXI ACNNNNNCTCC 2 cut(s) 763, 793
Bsc4I CCNNNNNNNGG 5 cut(s) 170, 209, 823, 892, 1348
Bse118I RCCGGY 1 cut(s) 885
Bse1I ACTGG 5 cut(s) 223, 273, 536, 1161, 1171
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 2 cut(s) 418, 598
BseAI TCCGGA 1 cut(s) 790
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 3 cut(s) 766, 817, 873
BseGI GGATG 5 cut(s) 496, 550, 832, 979, 1357
BseLI CCNNNNNNNGG 5 cut(s) 170, 209, 823, 892, 1348
BseMI GCAATG 2 cut(s) 418, 598
BseMII CTCAG 5 cut(s) 113, 195, 272, 671, 960
BseNI ACTGG 5 cut(s) 223, 273, 536, 1161, 1171
BseRI GAGGAG 2 cut(s) 419, 890
BseSI GKGCMC 4 cut(s) 549, 784, 1343, 1415
BseXI GCAGC 2 cut(s) 862, 1378
BshTI ACCGGT 1 cut(s) 885
BsiHKAI GWGCWC 2 cut(s) 784, 1415
BsiSI CCGG 5 cut(s) 164, 766, 791, 886, 1288
BslI CCNNNNNNNGG 5 cut(s) 170, 209, 823, 892, 1348
BsmAI GTCTC 5 cut(s) 80, 261, 270, 756, 1196
BsmBI CGTCTC 1 cut(s) 80
BsmI GAATGC 3 cut(s) 331, 605, 968
Bsp1286I GDGCHC 5 cut(s) 549, 610, 784, 1343, 1415
Bsp13I TCCGGA 1 cut(s) 790
Bsp143I GATC 4 cut(s) 289, 787, 1091, 1234
BspACI CCGC 2 cut(s) 603, 738
BspCNI CTCAG 5 cut(s) 114, 196, 271, 670, 961
BspEI TCCGGA 1 cut(s) 790
BspHI TCATGA 2 cut(s) 133, 978
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 782, 1099
BspQI GCTCTTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 418, 598
BsrFI RCCGGY 1 cut(s) 885
BsrI ACTGG 5 cut(s) 223, 273, 536, 1161, 1171
BssAI RCCGGY 1 cut(s) 885
BssECI CCNNGG 3 cut(s) 766, 817, 873
BssMI GATC 4 cut(s) 289, 787, 1091, 1234
BssSI CACGAG 2 cut(s) 32, 1095
BssT1I CCWWGG 1 cut(s) 817
Bst2BI CACGAG 2 cut(s) 32, 1095
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 6 cut(s) 75, 193, 506, 779, 956, 1185
Bst6I CTCTTC 3 cut(s) 369, 692, 1321
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstC8I GCNNGC 3 cut(s) 610, 1306, 1471
BstDEI CTNAG 8 cut(s) 122, 181, 204, 258, 657, 720, 969, 1474
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 5 cut(s) 496, 550, 832, 979, 1357
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 4 cut(s) 292, 790, 1094, 1237
BstMAI GTCTC 5 cut(s) 80, 261, 270, 756, 1196
BstMBI GATC 4 cut(s) 289, 787, 1091, 1234
BstMWI GCNNNNNNNGC 4 cut(s) 335, 609, 859, 1187
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 765, 1077
BstSFI CTRYAG 2 cut(s) 345, 1344
BstSLI GKGCMC 4 cut(s) 549, 784, 1343, 1415
BstV1I GCAGC 2 cut(s) 862, 1378
BstX2I RGATCY 3 cut(s) 787, 1091, 1234
BstYI RGATCY 3 cut(s) 787, 1091, 1234
Bsu36I CCTNAGG 1 cut(s) 720
BsuI GTATCC 3 cut(s) 120, 210, 806
BtgZI GCGATG 1 cut(s) 1386
BtsCI GGATG 5 cut(s) 496, 550, 832, 979, 1357
BtsIMutI CAGTG 3 cut(s) 511, 549, 1181
Cac8I GCNNGC 3 cut(s) 610, 1306, 1471
CciI TCATGA 2 cut(s) 133, 978
CfoI GCGC 1 cut(s) 968
Cfr10I RCCGGY 1 cut(s) 885
Cfr13I GGNCC 1 cut(s) 1400
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 885
CviAII CATG 7 cut(s) 59, 134, 653, 891, 937, 979, 1021
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 8 cut(s) 122, 181, 204, 258, 657, 720, 969, 1474
DpnI GATC 4 cut(s) 291, 789, 1093, 1236
DpnII GATC 4 cut(s) 289, 787, 1091, 1234
DraIII CACNNNGTG 1 cut(s) 1187
Eam1104I CTCTTC 3 cut(s) 369, 692, 1321
EarI CTCTTC 3 cut(s) 369, 692, 1321
Eco130I CCWWGG 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 1400
Eco57I CTGAAG 1 cut(s) 1053
Eco81I CCTNAGG 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 1077
EcoT14I CCWWGG 1 cut(s) 817
EcoT22I ATGCAT 2 cut(s) 761, 1022
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 817
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 7 cut(s) 62, 137, 656, 894, 940, 982, 1024
FatI CATG 7 cut(s) 58, 133, 652, 890, 936, 978, 1020
FauI CCCGC 1 cut(s) 596
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 851, 1392
FokI GGATG 5 cut(s) 503, 537, 839, 986, 1364
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 851, 1392
FspBI CTAG 1 cut(s) 1256
GlaI GCGC 1 cut(s) 967
GluI GCNGC 2 cut(s) 851, 1392
GsuI CTGGAG 1 cut(s) 553
HapII CCGG 5 cut(s) 164, 766, 791, 886, 1288
HhaI GCGC 1 cut(s) 968
Hin1II CATG 7 cut(s) 62, 137, 656, 894, 940, 982, 1024
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 5 cut(s) 118, 395, 539, 661, 1194
HpaII CCGG 5 cut(s) 164, 766, 791, 886, 1288
HphI GGTGA 5 cut(s) 251, 488, 532, 1112, 1138
Hpy166II GTNNAC 4 cut(s) 21, 216, 782, 1413
Hpy188I TCNGA 5 cut(s) 123, 261, 660, 929, 1441
Hpy8I GTNNAC 4 cut(s) 21, 216, 782, 1413
HpyAV CCTTC 4 cut(s) 310, 481, 803, 817
HpyCH4III ACNGT 6 cut(s) 75, 193, 506, 779, 956, 1185
HpyCH4V TGCA 8 cut(s) 419, 747, 759, 782, 862, 1020, 1308, 1413
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 609, 859, 1187
HpyF3I CTNAG 8 cut(s) 122, 181, 204, 258, 657, 720, 969, 1474
Hsp92II CATG 7 cut(s) 62, 137, 656, 894, 940, 982, 1024
HspAI GCGC 1 cut(s) 966
Kpn2I TCCGGA 1 cut(s) 790
Kzo9I GATC 4 cut(s) 289, 787, 1091, 1234
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 182, 341
Lsp1109I GCAGC 2 cut(s) 862, 1378
LweI GCATC 2 cut(s) 406, 481
MaeI CTAG 1 cut(s) 1256
MaeIII GTNAC 6 cut(s) 425, 476, 677, 910, 950, 1105
MalI GATC 4 cut(s) 291, 789, 1093, 1236
MbiI CCGCTC 1 cut(s) 740
MboI GATC 4 cut(s) 289, 787, 1091, 1234
MboII GAAGA 6 cut(s) 386, 448, 521, 679, 1046, 1338
MflI RGATCY 3 cut(s) 787, 1091, 1234
MhlI GDGCHC 5 cut(s) 549, 610, 784, 1343, 1415
MluCI AATT 5 cut(s) 384, 444, 640, 1218, 1294
MlyI GAGTC 3 cut(s) 112, 389, 548
Mph1103I ATGCAT 2 cut(s) 761, 1022
MroI TCCGGA 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 6 cut(s) 99, 1011, 1059, 1131, 1298, 1457
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 5 cut(s) 164, 766, 791, 886, 1288
MspR9I CCNGG 2 cut(s) 767, 1079
Mva1269I GAATGC 3 cut(s) 331, 605, 968
MvaI CCWGG 1 cut(s) 1079
MwoI GCNNNNNNNGC 4 cut(s) 335, 609, 859, 1187
NciI CCSGG 1 cut(s) 767
NdeII GATC 4 cut(s) 289, 787, 1091, 1234
NlaIII CATG 7 cut(s) 62, 137, 656, 894, 940, 982, 1024
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 2 cut(s) 476, 910
NsiI ATGCAT 2 cut(s) 761, 1022
NspI RCATGY 1 cut(s) 62
PagI TCATGA 2 cut(s) 133, 978
PciI ACATGT 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 1093
PctI GAATGC 3 cut(s) 331, 605, 968
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 2 cut(s) 661, 1194
PinAI ACCGGT 1 cut(s) 885
PkrI GCNGC 2 cut(s) 852, 1393
PleI GAGTC 3 cut(s) 112, 389, 547
PpsI GAGTC 3 cut(s) 112, 389, 547
PscI ACATGT 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 1400
PsrI GAACNNNNNNTAC 2 cut(s) 30, 62
PsuI RGATCY 3 cut(s) 787, 1091, 1234
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 6 cut(s) 99, 1011, 1059, 1131, 1298, 1457
SatI GCNGC 2 cut(s) 851, 1392
Sau3AI GATC 4 cut(s) 289, 787, 1091, 1234
Sau96I GGNCC 1 cut(s) 1400
SchI GAGTC 3 cut(s) 112, 389, 548
ScrFI CCNGG 2 cut(s) 767, 1079
SduI GDGCHC 5 cut(s) 549, 610, 784, 1343, 1415
SfaNI GCATC 2 cut(s) 406, 481
SfcI CTRYAG 2 cut(s) 345, 1344
SinI GGWCC 1 cut(s) 1400
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 3 cut(s) 330, 665, 844
SmoI CTYRAG 3 cut(s) 330, 665, 844
Sse9I AATT 5 cut(s) 384, 444, 640, 1218, 1294
SsiI CCGC 2 cut(s) 603, 738
SspMI CTAG 1 cut(s) 1256
StyD4I CCNGG 2 cut(s) 765, 1077
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 6 cut(s) 75, 193, 506, 779, 956, 1185
TaqI TCGA 3 cut(s) 528, 1087, 1147
TasI AATT 5 cut(s) 384, 444, 640, 1218, 1294
TfiI GAWTC 2 cut(s) 661, 1194
Tru1I TTAA 6 cut(s) 99, 1011, 1059, 1131, 1298, 1457
Tru9I TTAA 6 cut(s) 99, 1011, 1059, 1131, 1298, 1457
TscAI CASTG 3 cut(s) 511, 549, 1188
TseFI GTSAC 2 cut(s) 476, 910
TseI GCWGC 2 cut(s) 850, 1391
Tsp45I GTSAC 2 cut(s) 476, 910
TspDTI ATGAA 3 cut(s) 953, 995, 1065
TspGWI ACGGA 1 cut(s) 1245
TspRI CASTG 3 cut(s) 511, 549, 1188
VneI GTGCAC 2 cut(s) 780, 1411
VpaK11BI GGWCC 1 cut(s) 1400
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 3 cut(s) 444, 640, 1218
XbaI TCTAGA 1 cut(s) 1255
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 1256
Zsp2I ATGCAT 2 cut(s) 761, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.