Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007727

Physical Location & Seq

Genomic Coordinates Forward (+)

79146272 .. 79150858

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGGATTTGTCAGCGAAGTTTACATTTTTACTCGTGGTGTTGGCTGTTCTTGAACAACATATTGTTTATGGACGGTTTGTGGTGGAGACGGGTAGTATTAAAGTTCTGTATCCAATGACTCTGAGGGGTAACCATGATGGTGCTATTGGAAACTTTGGTCTGCCGGACTATGGAGGCTCCTTAGTGGGTACCGTGGTATATCCTGTGAAAGGGTCTACTGGGTGTGAAGCTTTTGAGGGTGATAAGCCTTTCAGGTCTCAGAAGTCTCGCCCCACTATTGTTGTTCTTGATCGTGGAGGTTGCTACTTTGCTTTGAAGGTGTGGAATGCTCAAGAGGCAGGAGCTACAGCCGTTTTAGTGGCTGACAATGTTGAAGAGCCTCTAATTACAATGGACTCCCCAGAGGAGAGCAATGATGCAGATGGTTACATAGAGAAGATTGGAATTCCATCAGCTTTGATAGAGAAATCATTTGGTGACAGCTTGAAGGATGCTGTGAAAAACAGTGAAGATGTTGTGGTGAAACTTGACTGGAGAGAGTCAGTGCCCCATCCTGATCAAAGAGTTGAGTATGAGTTCTGGACAAACAGCAATGACGAATGCGGGGCTCGCTGTGATGAGCAAATGAATTTTGTGAAAAATTTCAAGGGTCATGCTCAGATTCTTGAGAAAGGGGGTTACACCCTCTTTACTCCACACTATATCACTTGGTATTGCCCTAAGGCTTTTGTCCTTACCGCTCAATGCAAGTCTCAATGCATAAACCGGGGGAGATACTGTGCACCAGATCCGGAAAAAGATTTCGGAGAAGGATACCAAGGGAAGGATGTGGTCTTTGAGAACTTGAGGCAGCTTTGTGTGCATAGAGTTGCCCAGGAGAGAAACCGGTCATGGGTCTGGTGGGATTATGTGACAGACTTCCATATCAGATGTTCCATGAAAGAAAAGCGTTACAGTAAAGAATGCGCTAAGGATGTCATGAAATCACTTGATTTGCCTATTGACAAGATTAAAAAATGCATGGGCAATCCTGAAGATGATGTGGAGAATGAAGTGCTTAAAGCTGAACAAGAAATCCAGGTTGGTCGAGGATCTCGTGGTGATGTTACCATCTTGCCAACGTTGGTGATTAACAATGTTCAATATCGAGGAAAACTAGAACGAACTGCTGTCCTAAAGGCACTATGTGCTGGATTCAAGGAGACAACTGAACCTCAAATTTGTTTGAACGGAGATCTTGAAACAAATGAGTGTCTAGAGAGGAATGGTGGCTGTTGGCTGGACAACCGGAGTAATTTAACTGCTTGCAAGGACACTTTTAGGGGAAGAGTTTGTGAGTGCCCTGTAGTGGATGGTGTACAATATAAAGGCGATGGTTATACATCTTGTGCTGCTTTTGGACCAGCAAGGTGCGCGATAGACAATGGAGGTTGCTGGTCAGAATCTAGAAATGGATTAACTGTATCTGCTTGCTCAAATTCCGAGTTATCTGGCTGCAAGTGTCCACAAGGATTTAAAGGGGATGGCCATCATTGCGAAGATATCGATGAATGCAAGGAACGTACTGCTTGTCAGTGTGATGGCTGCAGCTGTAAGAACACTTGGGGTGGATACAACTGCAAATGTAAGGGAGGACATCTTTATATAAAGGAGCAAGATACTTGTATTGAGAGACAAGGATCGAGATTTGCATGGTTCATAACTTTCATGGTTCTTGCGGCTGTGGCTGGAGTTGGCTTGGCTGGTTACATATTCTACAAATACAGGCTTCGATCTTACATGGACTCGGAGATCATGGCTATCATGTCACAATACATGCCTCTAGACGGTCAACAGGCCAATCAAGTCCGTACTGCCGAGGTAGAACCTCTGCGACATGGCTCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

629

Amino Acids

70.17

Weight (kDa)

5.52

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	63 - 162	7.6e-17	PA domain
VSR_TRX	PF25011	189 - 396	1.3e-102	Vacuolar sorting receptor thioredoxin-like domain
cEGF	PF12662	499 - 517	1.1e-06	Complement Clr-like EGF-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30900 AT2G34940 AT4G20110 AT4G20110
fragaria_vesca	FvH4_3g13190 FvH4_3g13190
malus_domestica	MD05G1244500.v1.1 MD10G1226100.v1.1
prunus_persica	Prupe.4G119200_v2.0.a1 Prupe.4G119200_v2.0.a1 Prupe.4G119200_v2.0.a1
pyrus_communis	pycom05g22100 pycom10g19000
rosa_chinensis	RchiOBHm_Chr5g0021401
rosa_laevigata	RLG00000032610
rosa_multiflora	Rmu_co8489967.1_g000001 Rmu_sc0004847.1_g000021
rosa_roxburghii	Rroxscaffold_1G00057140
rosa_rugosa	Rorug05G0067000
rosa_samantha	Rh5AG156100 Rh5BG155600 Rh5CG169300 Rh5DG156100
rosa_wichuraiana	Rw5G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	1415
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	3 cut(s)	603, 738, 1718
AclI	AACGTT	1 cut(s)	1121
AclWI	GGATC	3 cut(s)	782, 1099, 1687
AcoI	YGGCCR	1 cut(s)	1525
AcsI	RAATTY	5 cut(s)	444, 628, 640, 1218, 1477
AcuI	CTGAAG	1 cut(s)	1053
AdeI	CACNNNGTG	1 cut(s)	1187
AfaI	GTAC	4 cut(s)	190, 1359, 1564, 1852
AfiI	CCNNNNNNNGG	6 cut(s)	170, 209, 823, 892, 1348, 1826
AgeI	ACCGGT	1 cut(s)	885
AgsI	TTSAA	9 cut(s)	53, 316, 374, 487, 646, 1142, 1198, 1228, 1241
AjnI	CCWGG	2 cut(s)	873, 1077
AjuI	GAANNNNNNNTTGG	2 cut(s)	1065, 1097
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
AluBI	AGCT	7 cut(s)	230, 344, 455, 483, 853, 1064, 1590
AluI	AGCT	7 cut(s)	230, 344, 455, 483, 853, 1064, 1590
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	6 cut(s)	80, 261, 270, 756, 1196, 1666
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	782, 1099, 1687
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	2 cut(s)	1525, 1836
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	850, 1391, 1494, 1584, 1587
ApoI	RAATTY	5 cut(s)	444, 628, 640, 1218, 1477
AsiGI	ACCGGT	1 cut(s)	885
Asp700I	GAANNNNTTC	1 cut(s)	641
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	968, 1415
AspS9I	GGNCC	1 cut(s)	1400
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	5 cut(s)	251, 488, 532, 1112, 1138
AvaII	GGWCC	1 cut(s)	1400
AxyI	CCTNAGG	1 cut(s)	720
BaeGI	GKGCMC	3 cut(s)	549, 784, 1343
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BalI	TGGCCA	1 cut(s)	1527
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	610
BauI	CACGAG	2 cut(s)	32, 1095
Bbv12I	GWGCWC	1 cut(s)	784
BbvI	GCAGC	5 cut(s)	862, 1378, 1481, 1571, 1599
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	875, 1079
BciVI	GTATCC	3 cut(s)	120, 806, 1604
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	6 cut(s)	80, 261, 270, 756, 1196, 1666
BfaI	CTAG	4 cut(s)	1157, 1256, 1446, 1823
BfmI	CTRYAG	3 cut(s)	345, 1344, 1585
BfuI	GTATCC	3 cut(s)	120, 806, 1604
BglII	AGATCT	1 cut(s)	1234
BisI	GCNGC	6 cut(s)	851, 1392, 1495, 1585, 1588, 1719
BlsI	GCNGC	6 cut(s)	852, 1393, 1496, 1586, 1589, 1720
Bme1390I	CCNGG	3 cut(s)	767, 875, 1079
Bme18I	GGWCC	1 cut(s)	1400
BmgT120I	GGNCC	1 cut(s)	1400
BmiI	GGNNCC	2 cut(s)	178, 190
BmrFI	CCNGG	3 cut(s)	767, 875, 1079
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	406, 481
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	2 cut(s)	553, 1749
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	3 cut(s)	315, 686, 865
BpuMI	CCSGG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	1545
BsaBI	GATNNNNATC	1 cut(s)	1527
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	192, 766, 817, 873, 1857
BsaWI	WCCGGW	3 cut(s)	790, 885, 1287
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	6 cut(s)	170, 209, 823, 892, 1348, 1826
Bse118I	RCCGGY	1 cut(s)	885
Bse1I	ACTGG	2 cut(s)	223, 536
Bse21I	CCTNAGG	1 cut(s)	720
Bse3DI	GCAATG	3 cut(s)	418, 598, 1531
Bse8I	GATNNNNATC	1 cut(s)	1527
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	2 cut(s)	875, 1079
BseCI	ATCGAT	1 cut(s)	1545
BseDI	CCNNGG	5 cut(s)	192, 766, 817, 873, 1857
BseGI	GGATG	6 cut(s)	496, 550, 832, 979, 1357, 1528
BseJI	GATNNNNATC	1 cut(s)	1527
BseLI	CCNNNNNNNGG	6 cut(s)	170, 209, 823, 892, 1348, 1826
BseMI	GCAATG	3 cut(s)	418, 598, 1531
BseMII	CTCAG	3 cut(s)	113, 272, 671
BseNI	ACTGG	2 cut(s)	223, 536
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	3 cut(s)	549, 784, 1343
BseXI	GCAGC	5 cut(s)	862, 1378, 1481, 1571, 1599
Bsh1236I	CGCG	1 cut(s)	1415
BshFI	GGCC	2 cut(s)	1527, 1838
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	885
BshVI	ATCGAT	1 cut(s)	1545
BsiHKAI	GWGCWC	1 cut(s)	784
BsiSI	CCGG	5 cut(s)	164, 766, 791, 886, 1288
BslI	CCNNNNNNNGG	6 cut(s)	170, 209, 823, 892, 1348, 1826
BsmAI	GTCTC	6 cut(s)	80, 261, 270, 756, 1196, 1666
BsmBI	CGTCTC	1 cut(s)	80
BsmI	GAATGC	4 cut(s)	331, 605, 968, 1556
BsnI	GGCC	2 cut(s)	1527, 1838
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	549, 610, 784, 1343
Bsp13I	TCCGGA	1 cut(s)	790
Bsp1407I	TGTACA	1 cut(s)	1357
Bsp143I	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
BspACI	CCGC	3 cut(s)	603, 738, 1718
BspANI	GGCC	2 cut(s)	1527, 1838
BspCNI	CTCAG	3 cut(s)	114, 271, 670
BspDI	ATCGAT	1 cut(s)	1545
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	1415
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	2 cut(s)	178, 190
BspMAI	CTGCAG	1 cut(s)	1589
BspPI	GGATC	3 cut(s)	782, 1099, 1687
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	740
BsrDI	GCAATG	3 cut(s)	418, 598, 1531
BsrFI	RCCGGY	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	1357
BsrI	ACTGG	2 cut(s)	223, 536
BssAI	RCCGGY	1 cut(s)	885
BssECI	CCNNGG	5 cut(s)	192, 766, 817, 873, 1857
BssMI	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
BssSI	CACGAG	2 cut(s)	32, 1095
BssT1I	CCWWGG	1 cut(s)	817
Bst2BI	CACGAG	2 cut(s)	32, 1095
Bst2UI	CCWGG	2 cut(s)	875, 1079
Bst4CI	ACNGT	7 cut(s)	75, 193, 506, 779, 956, 1462, 1829
Bst6I	CTCTTC	2 cut(s)	369, 1321
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstAUI	TGTACA	1 cut(s)	1357
BstC8I	GCNNGC	3 cut(s)	610, 1306, 1471
BstDEI	CTNAG	7 cut(s)	122, 181, 258, 657, 720, 969, 1882
BstDSI	CCRYGG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	6 cut(s)	496, 550, 832, 979, 1357, 1528
BstFNI	CGCG	1 cut(s)	1415
BstHHI	GCGC	2 cut(s)	968, 1415
BstKTI	GATC	8 cut(s)	292, 559, 790, 1094, 1237, 1682, 1775, 1794
BstMAI	GTCTC	6 cut(s)	80, 261, 270, 756, 1196, 1666
BstMBI	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
BstMWI	GCNNNNNNNGC	7 cut(s)	335, 609, 859, 1187, 1412, 1533, 1724
BstNI	CCWGG	2 cut(s)	875, 1079
BstNSI	RCATGY	1 cut(s)	1819
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	765, 873, 1077
BstSFI	CTRYAG	3 cut(s)	345, 1344, 1585
BstSLI	GKGCMC	3 cut(s)	549, 784, 1343
BstUI	CGCG	1 cut(s)	1415
BstV1I	GCAGC	5 cut(s)	862, 1378, 1481, 1571, 1599
BstX2I	RGATCY	3 cut(s)	787, 1091, 1234
BstYI	RGATCY	3 cut(s)	787, 1091, 1234
Bsu15I	ATCGAT	1 cut(s)	1545
Bsu36I	CCTNAGG	1 cut(s)	720
BsuI	GTATCC	3 cut(s)	120, 806, 1604
BsuRI	GGCC	2 cut(s)	1527, 1838
BsuTUI	ATCGAT	1 cut(s)	1545
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	1386
BtsCI	GGATG	6 cut(s)	496, 550, 832, 979, 1357, 1528
BtsIMutI	CAGTG	3 cut(s)	511, 549, 1580
Cac8I	GCNNGC	3 cut(s)	610, 1306, 1471
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	2 cut(s)	968, 1415
Cfr10I	RCCGGY	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	1400
ClaI	ATCGAT	1 cut(s)	1545
Csp6I	GTAC	4 cut(s)	189, 1358, 1563, 1851
CspAI	ACCGGT	1 cut(s)	885
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviQI	GTAC	4 cut(s)	189, 1358, 1563, 1851
DdeI	CTNAG	7 cut(s)	122, 181, 258, 657, 720, 969, 1882
DpnI	GATC	8 cut(s)	291, 558, 789, 1093, 1236, 1681, 1774, 1793
DpnII	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
DraI	TTTAAA	1 cut(s)	1516
DraIII	CACNNNGTG	1 cut(s)	1187
EaeI	YGGCCR	1 cut(s)	1525
Eam1104I	CTCTTC	2 cut(s)	369, 1321
EarI	CTCTTC	2 cut(s)	369, 1321
Eco130I	CCWWGG	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	1543
Eco47I	GGWCC	1 cut(s)	1400
Eco57I	CTGAAG	1 cut(s)	1053
Eco81I	CCTNAGG	1 cut(s)	720
Eco91I	GGTNACC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	873, 1077
EcoRV	GATATC	1 cut(s)	1543
EcoT14I	CCWWGG	1 cut(s)	817
EcoT22I	ATGCAT	2 cut(s)	761, 1022
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	817
Esp3I	CGTCTC	1 cut(s)	80
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	6 cut(s)	851, 1392, 1495, 1585, 1588, 1719
FokI	GGATG	6 cut(s)	503, 537, 839, 986, 1364, 1535
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	6 cut(s)	851, 1392, 1495, 1585, 1588, 1719
FspBI	CTAG	4 cut(s)	1157, 1256, 1446, 1823
GlaI	GCGC	2 cut(s)	967, 1414
GluI	GCNGC	6 cut(s)	851, 1392, 1495, 1585, 1588, 1719
GsuI	CTGGAG	2 cut(s)	553, 1749
HaeIII	GGCC	2 cut(s)	1527, 1838
HapII	CCGG	5 cut(s)	164, 766, 791, 886, 1288
HhaI	GCGC	2 cut(s)	968, 1415
Hin6I	GCGC	2 cut(s)	966, 1413
HinP1I	GCGC	2 cut(s)	966, 1413
HincII	GTYRAC	1 cut(s)	1832
HindII	GTYRAC	1 cut(s)	1832
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	7 cut(s)	118, 395, 539, 661, 1194, 1442, 1784
HpaII	CCGG	5 cut(s)	164, 766, 791, 886, 1288
HphI	GGTGA	5 cut(s)	251, 488, 532, 1112, 1138
Hpy166II	GTNNAC	6 cut(s)	21, 216, 782, 1358, 1505, 1832
Hpy188I	TCNGA	8 cut(s)	123, 261, 660, 806, 929, 1441, 1483, 1789
Hpy8I	GTNNAC	6 cut(s)	21, 216, 782, 1358, 1505, 1832
HpyAV	CCTTC	4 cut(s)	310, 481, 803, 817
HpyCH4III	ACNGT	7 cut(s)	75, 193, 506, 779, 956, 1462, 1829
HpyCH4IV	ACGT	2 cut(s)	1121, 1561
HpyF10VI	GCNNNNNNNGC	7 cut(s)	335, 609, 859, 1187, 1412, 1533, 1724
HpyF3I	CTNAG	7 cut(s)	122, 181, 258, 657, 720, 969, 1882
HpySE526I	ACGT	2 cut(s)	1121, 1561
HspAI	GCGC	2 cut(s)	966, 1413
Kpn2I	TCCGGA	1 cut(s)	790
KpnI	GGTACC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	182, 341, 1651
Lsp1109I	GCAGC	5 cut(s)	862, 1378, 1481, 1571, 1599
LweI	GCATC	2 cut(s)	406, 481
MaeI	CTAG	4 cut(s)	1157, 1256, 1446, 1823
MaeII	ACGT	2 cut(s)	1121, 1561
MaeIII	GTNAC	9 cut(s)	128, 425, 476, 677, 910, 950, 1105, 1745, 1806
MalI	GATC	8 cut(s)	291, 558, 789, 1093, 1236, 1681, 1774, 1793
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
MboII	GAAGA	6 cut(s)	386, 448, 521, 1046, 1338, 1550
MflI	RGATCY	3 cut(s)	787, 1091, 1234
MhlI	GDGCHC	4 cut(s)	549, 610, 784, 1343
MlsI	TGGCCA	1 cut(s)	1527
MluCI	AATT	7 cut(s)	384, 444, 628, 640, 1218, 1294, 1477
MluNI	TGGCCA	1 cut(s)	1527
MlyI	GAGTC	4 cut(s)	112, 389, 548, 1778
Mox20I	TGGCCA	1 cut(s)	1527
Mph1103I	ATGCAT	2 cut(s)	761, 1022
MroI	TCCGGA	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	1527
MseI	TTAA	7 cut(s)	99, 1011, 1059, 1131, 1298, 1457, 1515
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	1527
MspA1I	CMGCKG	1 cut(s)	1590
MspI	CCGG	5 cut(s)	164, 766, 791, 886, 1288
MspR9I	CCNGG	3 cut(s)	767, 875, 1079
Mva1269I	GAATGC	4 cut(s)	331, 605, 968, 1556
MvaI	CCWGG	2 cut(s)	875, 1079
MvnI	CGCG	1 cut(s)	1415
MwoI	GCNNNNNNNGC	7 cut(s)	335, 609, 859, 1187, 1412, 1533, 1724
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
NlaIV	GGNNCC	2 cut(s)	178, 190
NmeAIII	GCCGAG	1 cut(s)	1882
NmuCI	GTSAC	3 cut(s)	476, 910, 1806
NsiI	ATGCAT	2 cut(s)	761, 1022
NspI	RCATGY	1 cut(s)	1819
PagI	TCATGA	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	1093
PctI	GAATGC	4 cut(s)	331, 605, 968, 1556
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	661, 1194, 1442
PinAI	ACCGGT	1 cut(s)	885
PkrI	GCNGC	6 cut(s)	852, 1393, 1496, 1586, 1589, 1720
PleI	GAGTC	4 cut(s)	112, 389, 547, 1778
PpsI	GAGTC	4 cut(s)	112, 389, 547, 1778
Psp1406I	AACGTT	1 cut(s)	1121
Psp6I	CCWGG	2 cut(s)	873, 1077
PspEI	GGTNACC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	873, 1077
PspN4I	GGNNCC	2 cut(s)	178, 190
PspPI	GGNCC	1 cut(s)	1400
PstI	CTGCAG	1 cut(s)	1589
PsuI	RGATCY	3 cut(s)	787, 1091, 1234
PvuII	CAGCTG	1 cut(s)	1590
RsaI	GTAC	4 cut(s)	190, 1359, 1564, 1852
RsaNI	GTAC	4 cut(s)	189, 1358, 1563, 1851
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	7 cut(s)	99, 1011, 1059, 1131, 1298, 1457, 1515
SatI	GCNGC	6 cut(s)	851, 1392, 1495, 1585, 1588, 1719
Sau3AI	GATC	8 cut(s)	289, 556, 787, 1091, 1234, 1679, 1772, 1791
Sau96I	GGNCC	1 cut(s)	1400
SchI	GAGTC	4 cut(s)	112, 389, 548, 1778
ScrFI	CCNGG	3 cut(s)	767, 875, 1079
SduI	GDGCHC	4 cut(s)	549, 610, 784, 1343
SfaNI	GCATC	2 cut(s)	406, 481
SfcI	CTRYAG	3 cut(s)	345, 1344, 1585
SinI	GGWCC	1 cut(s)	1400
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	3 cut(s)	330, 665, 844
SmoI	CTYRAG	3 cut(s)	330, 665, 844
Sse9I	AATT	7 cut(s)	384, 444, 628, 640, 1218, 1294, 1477
SsiI	CCGC	3 cut(s)	603, 738, 1718
SspMI	CTAG	4 cut(s)	1157, 1256, 1446, 1823
StyD4I	CCNGG	3 cut(s)	765, 873, 1077
StyI	CCWWGG	1 cut(s)	817
TaaI	ACNGT	7 cut(s)	75, 193, 506, 779, 956, 1462, 1829
TaiI	ACGT	2 cut(s)	1124, 1564
TaqI	TCGA	5 cut(s)	1087, 1147, 1545, 1682, 1771
TasI	AATT	7 cut(s)	384, 444, 628, 640, 1218, 1294, 1477
TatI	WGTACW	1 cut(s)	1357
TauI	GCSGC	1 cut(s)	1721
TfiI	GAWTC	3 cut(s)	661, 1194, 1442
Tru1I	TTAA	7 cut(s)	99, 1011, 1059, 1131, 1298, 1457, 1515
Tru9I	TTAA	7 cut(s)	99, 1011, 1059, 1131, 1298, 1457, 1515
TscAI	CASTG	3 cut(s)	511, 549, 1580
TseFI	GTSAC	3 cut(s)	476, 910, 1806
TseI	GCWGC	5 cut(s)	850, 1391, 1494, 1584, 1587
Tsp45I	GTSAC	3 cut(s)	476, 910, 1806
TspDTI	ATGAA	7 cut(s)	641, 953, 995, 1065, 1563, 1687, 1696
TspGWI	ACGGA	2 cut(s)	1245, 1838
TspRI	CASTG	3 cut(s)	511, 549, 1580
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	1400
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	5 cut(s)	444, 628, 640, 1218, 1477
XbaI	TCTAGA	3 cut(s)	1255, 1445, 1822
XceI	RCATGY	1 cut(s)	1819
XmiI	GTMKAC	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	4 cut(s)	1157, 1256, 1446, 1823
Zsp2I	ATGCAT	2 cut(s)	761, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.