Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8504721.1

Orthogroup ID

OG0010494

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2487

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8504721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ctgcaggatgttaaagacaactccgtcgtgcgtgatggggcttcatctaccttgcatgatgcttttttaagccgccttgcacaagctggtgcaactgaaagttcatgtacatataacaattgtaataagatggaagaagatagaggaactacctttgaagatactcagaatatattaggtaatatagtagctgcaattgacaacgtgtggaatctgaaggatgcattgcatgatgcactgttgaaagagcttccagaagatggcttgtctaggcagagggcatccaatgatttaaaaatggaagttaagaacttgagattggcattttctgatattcttctgaagcacagaggtctggcaagggaactgcagaaccgctgggacattgaagcaaagaataaagcggagattaaacgtctgaaaggggagttggaaaccactcttggtgaattggaagagaataatcgtcaactagcaagtctaaaagcagagagagattctacaaaaggggcaactttccccgtcttaaattttctgaacaagcctgttgatagggccagagataagcaaaaggatctgcaagatatggagtctactctcaaagagctcacggaccaagcttcttgtcgactaatggaaataaaaagccttcatgaagaacggataaaaatattacagcagttatctagtttgcagaacatgatgaggaatgcgaagtgtctttcctcttccaaagcctatctcttggtcaaagatcaaatagaaaagtcgaaatcggaagtttttgagtgccaaacaatctttgagaaactacaggttgagaaggataatcttgtgtggagggagagggaacttaatgttaaaaatgatgtagttgatgttttgcggagatcagctgcagttgttgattctagaattactgatctgggtatggagatacagaaacagattgatgaaaggaaaaggattgaagcgaagctggaagaggcgtcaagagaaccaggaagaaaagaagtacttgaagaatttaaggccttggtttcttcatttcctgagcaaatgggtgccatgcaaggtcaattacgtaaatacaaagaggctgcttctgattttcattctttgcaggctgatgtgcagtccctttccagcattcttgatagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009814 GO:0009817 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010389 GO:0010390 GO:0010431 GO:0010564 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051276 GO:0051301 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0051781 GO:0061458 GO:0065007 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902749 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

387

Amino Acids

44.15

Weight (kDa)

5.7

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44950 AT2G44950
fragaria_vesca	FvH4_7g09510 FvH4_7g09510 FvH4_7g09510
malus_domestica	MD02G1218200.v1.1 MD07G1098900.v1.1
prunus_persica	Prupe.2G122900_v2.0.a1
pyrus_communis	pycom07g08140 pycom12652g00010
rosa_chinensis	RchiOBHm_Chr1g0346311
rosa_laevigata	RLG00000028806
rosa_multiflora	Rmu_co8504721.1_g000001 Rmu_sc0003363.1_g000041
rosa_roxburghii	Rroxscaffold_4G00308720
rosa_rugosa	Rorug01G0179100
rosa_samantha	Rh1AG198500 Rh1BG164500 Rh1CG183800 Rh1DG195200
rosa_wichuraiana	Rw1G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	1064
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	593, 628
AciI	CCGC	4 cut(s)	73, 376, 404, 886
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	529, 1025
AcuI	CTGAAG	2 cut(s)	236, 362
AcyI	GRCGYC	1 cut(s)	989
AfaI	GTAC	2 cut(s)	109, 1017
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	5 cut(s)	158, 244, 389, 971, 1022
AjnI	CCWGG	1 cut(s)	1000
AjuI	GAANNNNNNNTTGG	6 cut(s)	302, 334, 413, 426, 445, 458
AluBI	AGCT	7 cut(s)	86, 191, 250, 607, 620, 896, 979
AluI	AGCT	7 cut(s)	86, 191, 250, 607, 620, 896, 979
Alw21I	GWGCWC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	2 cut(s)	555, 1032
ApeKI	GCWGC	3 cut(s)	191, 896, 1100
ApoI	RAATTY	2 cut(s)	529, 1025
AspS9I	GGNCC	2 cut(s)	555, 613
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	178, 883, 1087
BccI	CCATC	3 cut(s)	29, 124, 254
BciT130I	CCWGG	1 cut(s)	1002
BfaI	CTAG	4 cut(s)	270, 473, 687, 912
BfmI	CTRYAG	4 cut(s)	2, 368, 812, 897
BisI	GCNGC	4 cut(s)	73, 192, 897, 1101
BlsI	GCNGC	4 cut(s)	74, 193, 898, 1102
BmcAI	AGTACT	1 cut(s)	1017
Bme1390I	CCNGG	1 cut(s)	1002
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	555, 613
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	1 cut(s)	1002
BmsI	GCATC	4 cut(s)	49, 211, 223, 290
Bpu10I	CCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	1002
BseDI	CCNNGG	1 cut(s)	1035
BseGI	GGATG	3 cut(s)	13, 226, 281
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	179, 1044
BseXI	GCAGC	3 cut(s)	178, 883, 1087
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	1154
BshFI	GGCC	2 cut(s)	557, 1034
BshNI	GGYRCC	1 cut(s)	1064
BsiHKAI	GWGCWC	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	395, 1123
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	395, 1123
BsmI	GAATGC	2 cut(s)	715, 1149
BsnI	GGCC	2 cut(s)	557, 1034
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	574, 754, 890, 922
BspACI	CCGC	4 cut(s)	73, 376, 404, 886
BspANI	GGCC	2 cut(s)	557, 1034
BspCNI	CTCAG	2 cut(s)	178, 1045
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	3 cut(s)	6, 372, 901
BspPI	GGATC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	1064
BsrDI	GCAATG	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	1035
BssMI	GATC	4 cut(s)	574, 754, 890, 922
BssNI	GRCGYC	1 cut(s)	989
BssT1I	CCWWGG	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	3 cut(s)	450, 733, 978
BstACI	GRCGYC	1 cut(s)	989
BstAUI	TGTACA	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	1125
BstDEI	CTNAG	2 cut(s)	165, 1053
BstF5I	GGATG	3 cut(s)	13, 226, 281
BstKTI	GATC	4 cut(s)	577, 757, 893, 925
BstMBI	GATC	4 cut(s)	574, 754, 890, 922
BstNI	CCWGG	1 cut(s)	1002
BstSCI	CCNGG	1 cut(s)	1000
BstSFI	CTRYAG	4 cut(s)	2, 368, 812, 897
BstSNI	TACGTA	1 cut(s)	1085
BstV1I	GCAGC	3 cut(s)	178, 883, 1087
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	557, 1034
BtsCI	GGATG	3 cut(s)	13, 226, 281
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	1125
CciI	TCATGA	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	555, 613
CseI	GACGC	1 cut(s)	978
Csp6I	GTAC	2 cut(s)	108, 1016
CviAII	CATG	6 cut(s)	56, 105, 230, 653, 700, 1069
CviQI	GTAC	2 cut(s)	108, 1016
DdeI	CTNAG	2 cut(s)	165, 1053
DpnI	GATC	4 cut(s)	576, 756, 892, 924
DpnII	GATC	4 cut(s)	574, 754, 890, 922
DraI	TTTAAA	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	450, 733, 978
EarI	CTCTTC	3 cut(s)	450, 733, 978
Ecl136II	GAGCTC	1 cut(s)	607
Eco105I	TACGTA	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	1035
Eco147I	AGGCCT	1 cut(s)	1034
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	2 cut(s)	236, 362
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	1000
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	6 cut(s)	59, 108, 233, 656, 703, 1072
FalI	AAGNNNNNCTT	2 cut(s)	1002, 1034
FaqI	GGGAC	2 cut(s)	395, 1123
FatI	CATG	6 cut(s)	55, 104, 229, 652, 699, 1068
FblI	GTMKAC	2 cut(s)	593, 628
Fnu4HI	GCNGC	4 cut(s)	73, 192, 897, 1101
FokI	GGATG	3 cut(s)	20, 233, 268
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	4 cut(s)	73, 192, 897, 1101
FspBI	CTAG	4 cut(s)	270, 473, 687, 912
GluI	GCNGC	4 cut(s)	73, 192, 897, 1101
GsaI	CCCAGC	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	557, 1034
HgaI	GACGC	1 cut(s)	978
Hin1I	GRCGYC	1 cut(s)	989
Hin1II	CATG	6 cut(s)	59, 108, 233, 656, 703, 1072
HincII	GTYRAC	2 cut(s)	470, 629
HindII	GTYRAC	2 cut(s)	470, 629
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	4 cut(s)	211, 497, 590, 908
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	3 cut(s)	470, 594, 629
Hpy188I	TCNGA	8 cut(s)	168, 216, 331, 342, 420, 537, 778, 1108
Hpy188III	TCNNGA	6 cut(s)	254, 653, 912, 993, 1052, 1154
Hpy8I	GTNNAC	3 cut(s)	470, 594, 629
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	211, 659, 817
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	3 cut(s)	204, 415, 1084
HpyF3I	CTNAG	2 cut(s)	165, 1053
HpySE526I	ACGT	3 cut(s)	204, 415, 1084
Hsp92I	GRCGYC	1 cut(s)	989
Hsp92II	CATG	6 cut(s)	59, 108, 233, 656, 703, 1072
Kzo9I	GATC	4 cut(s)	574, 754, 890, 922
Lsp1109I	GCAGC	3 cut(s)	178, 883, 1087
LweI	GCATC	4 cut(s)	49, 211, 223, 290
MaeI	CTAG	4 cut(s)	270, 473, 687, 912
MaeII	ACGT	3 cut(s)	204, 415, 1084
MalI	GATC	4 cut(s)	576, 756, 892, 924
MboI	GATC	4 cut(s)	574, 754, 890, 922
MfeI	CAATTG	2 cut(s)	118, 195
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	7 cut(s)	118, 195, 449, 529, 915, 1025, 1079
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	9 cut(s)	137, 270, 344, 699, 736, 834, 840, 979, 1090
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	9 cut(s)	12, 68, 293, 306, 411, 527, 855, 861, 1029
MspA1I	CMGCKG	2 cut(s)	378, 896
MspR9I	CCNGG	1 cut(s)	1002
MunI	CAATTG	2 cut(s)	118, 195
Mva1269I	GAATGC	2 cut(s)	715, 1149
MvaI	CCWGG	1 cut(s)	1002
NdeII	GATC	4 cut(s)	574, 754, 890, 922
NlaIII	CATG	6 cut(s)	59, 108, 233, 656, 703, 1072
NlaIV	GGNNCC	1 cut(s)	1066
NsiI	ATGCAT	1 cut(s)	226
PagI	TCATGA	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	1034
PctI	GAATGC	2 cut(s)	715, 1149
PfeI	GAWTC	3 cut(s)	211, 497, 908
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	74, 193, 898, 1102
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	1 cut(s)	1085
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	1000
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	2 cut(s)	555, 613
PstI	CTGCAG	3 cut(s)	6, 372, 901
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	2 cut(s)	109, 1017
RsaNI	GTAC	2 cut(s)	108, 1016
SacI	GAGCTC	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	627
SaqAI	TTAA	9 cut(s)	12, 68, 293, 306, 411, 527, 855, 861, 1029
SatI	GCNGC	4 cut(s)	73, 192, 897, 1101
Sau3AI	GATC	4 cut(s)	574, 754, 890, 922
Sau96I	GGNCC	2 cut(s)	555, 613
ScaI	AGTACT	1 cut(s)	1017
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	1002
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	4 cut(s)	49, 211, 223, 290
SfcI	CTRYAG	4 cut(s)	2, 368, 812, 897
SinI	GGWCC	1 cut(s)	613
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SnaBI	TACGTA	1 cut(s)	1085
Sse9I	AATT	7 cut(s)	118, 195, 449, 529, 915, 1025, 1079
SseBI	AGGCCT	1 cut(s)	1034
SsiI	CCGC	4 cut(s)	73, 376, 404, 886
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	4 cut(s)	270, 473, 687, 912
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	1 cut(s)	1034
StyD4I	CCNGG	1 cut(s)	1000
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	3 cut(s)	207, 418, 1087
TaqI	TCGA	2 cut(s)	628, 770
TasI	AATT	7 cut(s)	118, 195, 449, 529, 915, 1025, 1079
TatI	WGTACW	2 cut(s)	107, 1015
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	211, 497, 908
Tru1I	TTAA	9 cut(s)	12, 68, 293, 306, 411, 527, 855, 861, 1029
Tru9I	TTAA	9 cut(s)	12, 68, 293, 306, 411, 527, 855, 861, 1029
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	3 cut(s)	191, 896, 1100
TspDTI	ATGAA	7 cut(s)	33, 93, 641, 669, 969, 1035, 1103
TspGWI	ACGGA	3 cut(s)	13, 626, 676
TspRI	CASTG	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	2 cut(s)	529, 1025
XbaI	TCTAGA	1 cut(s)	911
XmiI	GTMKAC	2 cut(s)	593, 628
XspI	CTAG	4 cut(s)	270, 473, 687, 912
ZrmI	AGTACT	1 cut(s)	1017
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.