Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010494

Physical Location & Seq

Genomic Coordinates Forward (+)

37779502 .. 37789524

Gene Structure 10023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGGGGAGCACCGGTGAGCATGACCGGAAACGGCGTCACTTTAGCTCCATATCGTCACCCACGGCTGCTACTGCTAAGAAGCAGCCGTTTTTGCCTATTTCCGAGGATAAAAAGCTTGACATTGCTGTCCTTCAATATCAAAATCAAAAGCTATCACAGAAATTAGAGACTCAGAAGGTTGAGTACTCTGCTCTTCAGAATGAATTGTCTCAATTGGAGAAGAAACAACTGCCATATGATCCCACACTATCAGTGGTTAATAAGTCTTGGAAAGAGTTGGTCAAAGACTTGGAATCCTGTTCTATCCGATCAAGAAAGTCAACCTGTCAGCAAGATGTTAAAGACAACTCCGTCGTGCGTGGCCATCAACTGAATGCTGTTGAGATGATCTTCACACACCATCAGCATAATGTATTTCTTTTAGATGGGGCTCCATCTACCTTGCATGATACTTTTTTAAGCCGCCTTGCACAAGCTGGTGCAACTGAAAGTTCATGTACATATAACAATTGTAATAAGATGGAAGAAGATAGAGGAACTACCTCTGAAGATACTCAGAATATATTAGGTAATATAGTAGCTGCAATTGACAACGTGTGGAATCTGAAGGATGCATTGCATGATGCACTGTTGAAAGAGCTTCCAGAAGATGGCTTGTCTAGGCAGAGGGCATCCAATGATTTAAAAATGGAAGTTAAGAACTTGAGATTGGCATTTTCTGATATTCTTCTGAAGCACAGAGGTCTGGCAAGGGAACTGCAGAACCGCTGGGACATTGAAGCAAAGAATAAAGCGGAGATTAAACGTCTGAAAGGGGAGTTGGAAACCACTCTTGGTGAATTGGAAGAGAATAATCGTCAACTAGCAAGTCTAAAAGCAGAGAGAGATGCTACAAAAGGGGCAACTTTCCCTGTCTTAAATTTTCTGAACAAGCCTGTTGATAGGGCCAGAGATAAGCAAAAGGATCTGCAAGATATGGAGTCTACTCTCAAAGAGCTCACGGACCAAGCTTCTTGTCGACTAATGGAAATAAAAAGCCTTCATGAAGAACGGATAAAAATATTACAGCAGTTATCTAGTTTGCAGAACATGATGAGGAATGCGAAGTGTCTTTCCTCTTCCAAAGCCTATCTCTTGGTCAAAGATCAAATAGAAAAGTCGAAATCGGAAGTTTTTGAGTGCCAAACCATTTTTGAGAAACTACAGGTTGAGAAGGATAATCTTGTGTGGAGGGAGAGGGAACTTAATGTTAAAAATGATGTAGTTGATGTTTTGCGGAGATCAGCTGCAGTTGTTGATTCTAGAATTACTGATCTGGGTATGGAGATACAGAAACAGATTGATGAAAGGAAAAGGATTGAAGCGAAGCTGGAAGAGGCATCAAGAGAACCAGGAAGAAAAGAAGTACTTGAAGAATTTAAGGCCTTGGTTTCTTCATTTCCTGAGCAAATGGGTGCCATGCAAGGTCAATTACGTAAATACAAAGAGGCTGCTTCTGATTTTCATTCTTTGCAGGCTGATGTGCAGTCCCTTTCCAGCATTCTTGATAGGAAGGTGAAAGAGTGTGAGACTTTTTCTGCAAGATCCTCTGACCAACTCGCTGAGATACGGCAGTTGAAAGCTGTGGTCCAAGATATAAAGGAGACTGAATCAGAGTTAAAGCTGTTTTTGGAAATGTATAGACATGAATTGAGTGATCCAAGGGATGTCATGGAAGCTAGAGATTTGGAATGCAAGGCATGGGCTCATGTTGAAAGTTTGAAGTCATCTCTTGATGAACACAATTTAGAATTACGAGTTAAGATAGCAAATGAAGCTGAGGCCACTTCTCAACAAAGGCTTGCTGCTGTAGAAGCTGAGATTGCTGACCTCAGACAGAGGCTTGAAGCTTCCAAAAGGAATAATTCGAGACTTGCTGACGTTTTGAAATCCAAGACTGAAGAAAATGAGGCCTACTTGGCTGAAATTGAGACAATTGGACAAGCGTATGATGATATGCAAACTCAAAACCAGCATCTACTGCAGCAAATTACTGAGCGAGATGACTATAACATTAAGCTTGTTTTAGAGGGCATGAGGGCAAGACAGACACAGAATGCCGTACTCATGGACAAACGCAAGATGGAGAGGGAGATTCAACAAGGCAATGCATCTCTTAATTTCTATGAGATGAAAGCTACTCGGATTGAAGATCAGTTAAAACTATGCTCAGATCAGATTCAGAGACTAGCAGAACATAAGTTTCAAGGTGCAGTTCAACTGGAAAATACCCAGAAGAGGTTAATGGATGTGAGAAGGTCATCACAGCAAGCACAGGATTCTCTAGAGGAATCACAGTCTAAAGTTGTTAAGGGTCGATTGACTCTGTCCGAGATGCAGATAGATCTAGAGAAAGAAAGGCTTAACAAGAAGAGAATAGAGGAGGAATTAGAAGTTTTGAAAAGAAAAGCTGGTCGGCTTCAAGCACAGACAGAGGGTTCGTCAATTGTTGAAAAACTTCAACAGGAGCTTGGAGAATACCGGGAGATATTGAAATGTGATATCTGCCTTGACAGGACAAAACAGGTTGTCATTACAAAATGCTATCACTTGTTCTGCAATCCCTGTGTGCAAAAAGTAGTTGAATCTCGCCAGAGGAAATGTCCAAAATGTTCCATTAGTTTTGGGCCGAATGACATAAAATCTGTGTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009814 GO:0009817 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010389 GO:0010390 GO:0010431 GO:0010564 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051276 GO:0051301 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0051781 GO:0061458 GO:0065007 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902749 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

898

Amino Acids

103.25

Weight (kDa)

6.47

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	844 - 885	7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	845 - 884	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	846 - 884	2.3e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44950 AT2G44950
fragaria_vesca	FvH4_7g09510 FvH4_7g09510 FvH4_7g09510
malus_domestica	MD02G1218200.v1.1 MD07G1098900.v1.1
prunus_persica	Prupe.2G122900_v2.0.a1
pyrus_communis	pycom07g08140 pycom12652g00010
rosa_chinensis	RchiOBHm_Chr1g0346311
rosa_laevigata	RLG00000028806
rosa_multiflora	Rmu_co8504721.1_g000001 Rmu_sc0003363.1_g000041
rosa_roxburghii	Rroxscaffold_4G00308720
rosa_rugosa	Rorug01G0179100
rosa_samantha	Rh1AG198500 Rh1BG164500 Rh1CG183800 Rh1DG195200
rosa_wichuraiana	Rw1G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	125, 350
AccB1I	GGYRCC	1 cut(s)	1454
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	2 cut(s)	983, 1018
AciI	CCGC	4 cut(s)	463, 766, 794, 1276
AclWI	GGATC	4 cut(s)	233, 972, 1578, 1691
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	919, 1415
AcuI	CTGAAG	5 cut(s)	179, 567, 626, 752, 1959
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	5 cut(s)	185, 499, 1407, 2103, 2690
AfiI	CCNNNNNNNGG	2 cut(s)	650, 2277
AflIII	ACRYGT	1 cut(s)	594
AgeI	ACCGGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	1390
AjuI	GAANNNNNNNTTGG	6 cut(s)	692, 724, 803, 816, 835, 848
Alw21I	GWGCWC	2 cut(s)	11, 999
Alw26I	GTCTC	7 cut(s)	161, 213, 1562, 1637, 1903, 1964, 2218
AlwI	GGATC	4 cut(s)	233, 972, 1578, 1691
AoxI	GGCC	6 cut(s)	361, 945, 1422, 1821, 1950, 2666
ApeKI	GCWGC	7 cut(s)	65, 82, 581, 1286, 1490, 1844, 2023
ApoI	RAATTY	2 cut(s)	919, 1415
ArsI	GACNNNNNNTTYG	2 cut(s)	2461, 2493
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	2496
AspS9I	GGNCC	4 cut(s)	945, 1003, 1627, 2666
AsuC2I	CCSGG	1 cut(s)	2522
AsuHPI	GGTGA	4 cut(s)	26, 48, 848, 1567
AvaII	GGWCC	2 cut(s)	1003, 1627
BaeI	ACNNNNGTAYC	2 cut(s)	1598, 1631
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	1454
BanII	GRGCYC	3 cut(s)	433, 999, 1747
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
Bbv12I	GWGCWC	2 cut(s)	11, 999
BbvCI	CCTCAGC	1 cut(s)	1818
BbvI	GCAGC	7 cut(s)	52, 94, 568, 1273, 1477, 1831, 2035
BccI	CCATC	7 cut(s)	372, 408, 419, 442, 514, 644, 2116
BceAI	ACGGC	5 cut(s)	47, 70, 78, 1625, 2084
BciT130I	CCWGG	1 cut(s)	1392
BcnI	CCSGG	1 cut(s)	2522
BcoDI	GTCTC	7 cut(s)	161, 213, 1562, 1637, 1903, 1964, 2218
BfaI	CTAG	8 cut(s)	660, 863, 1077, 1302, 1719, 2228, 2324, 2387
BfmI	CTRYAG	5 cut(s)	758, 1202, 1287, 1848, 2021
BglI	GCCNNNNNGGC	1 cut(s)	1958
BglII	AGATCT	1 cut(s)	2383
BisI	GCNGC	8 cut(s)	66, 83, 463, 582, 1287, 1491, 1845, 2024
BlsI	GCNGC	8 cut(s)	67, 84, 464, 583, 1288, 1492, 1846, 2025
BmcAI	AGTACT	2 cut(s)	185, 1407
Bme1390I	CCNGG	2 cut(s)	1392, 2522
Bme18I	GGWCC	2 cut(s)	1003, 1627
BmgT120I	GGNCC	4 cut(s)	945, 1003, 1627, 2666
BmiI	GGNNCC	2 cut(s)	432, 1456
BmrFI	CCNGG	2 cut(s)	1392, 2522
BmsI	GCATC	8 cut(s)	601, 613, 680, 877, 1388, 2023, 2159, 2364
Bpu10I	CCTNAGC	2 cut(s)	1443, 1818
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	1 cut(s)	2522
BsaAI	YACGTR	1 cut(s)	1475
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	60, 102, 1425, 1700
BsaWI	WCCGGW	2 cut(s)	11, 24
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 2277
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	2265
Bse3DI	GCAATG	3 cut(s)	120, 614, 2152
BseBI	CCWGG	1 cut(s)	1392
BseDI	CCNNGG	4 cut(s)	60, 102, 1425, 1700
BseGI	GGATG	4 cut(s)	616, 671, 1711, 2293
BseLI	CCNNNNNNNGG	2 cut(s)	650, 2277
BseMI	GCAATG	3 cut(s)	120, 614, 2152
BseMII	CTCAG	9 cut(s)	185, 569, 1434, 1593, 1809, 1848, 1885, 2025, 2223
BseNI	ACTGG	1 cut(s)	2265
BseRI	GAGGAG	1 cut(s)	2435
BseXI	GCAGC	7 cut(s)	52, 94, 568, 1273, 1477, 1831, 2035
BseYI	CCCAGC	1 cut(s)	768
BsgI	GTGCAG	2 cut(s)	1544, 2271
BshFI	GGCC	6 cut(s)	363, 947, 1424, 1823, 1952, 2668
BshNI	GGYRCC	1 cut(s)	1454
BshTI	ACCGGT	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	11, 999
BsiSI	CCGG	3 cut(s)	12, 25, 2521
BslFI	GGGAC	2 cut(s)	785, 1513
BslI	CCNNNNNNNGG	2 cut(s)	650, 2277
BsmAI	GTCTC	7 cut(s)	161, 213, 1562, 1637, 1903, 1964, 2218
BsmFI	GGGAC	2 cut(s)	785, 1513
BsmI	GAATGC	5 cut(s)	379, 1105, 1539, 1736, 2101
BsnI	GGCC	6 cut(s)	363, 947, 1424, 1823, 1952, 2668
Bsp1286I	GDGCHC	4 cut(s)	11, 433, 999, 1747
Bsp1407I	TGTACA	2 cut(s)	497, 2688
BspACI	CCGC	4 cut(s)	463, 766, 794, 1276
BspANI	GGCC	6 cut(s)	363, 947, 1424, 1823, 1952, 2668
BspCNI	CTCAG	9 cut(s)	184, 568, 1435, 1594, 1810, 1849, 1884, 2026, 2222
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	2 cut(s)	432, 1456
BspMAI	CTGCAG	3 cut(s)	762, 1291, 2025
BspPI	GGATC	4 cut(s)	233, 972, 1578, 1691
BspQI	GCTCTTC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	1454
BsrDI	GCAATG	3 cut(s)	120, 614, 2152
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	2 cut(s)	497, 2688
BsrI	ACTGG	1 cut(s)	2265
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	4 cut(s)	60, 102, 1425, 1700
BssNI	GRCGYC	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	1425, 1700
Bst2UI	CCWGG	1 cut(s)	1392
Bst4CI	ACNGT	2 cut(s)	630, 2337
Bst6I	CTCTTC	6 cut(s)	198, 840, 1123, 1368, 2270, 2405
BstACI	GRCGYC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	2020
BstAUI	TGTACA	2 cut(s)	497, 2688
BstBAI	YACGTR	1 cut(s)	1475
BstC8I	GCNNGC	3 cut(s)	1515, 1842, 2310
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	616, 671, 1711, 2293
BstMAI	GTCTC	7 cut(s)	161, 213, 1562, 1637, 1903, 1964, 2218
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 91, 1814, 1853, 1862, 1958, 2020
BstNI	CCWGG	1 cut(s)	1392
BstSCI	CCNGG	2 cut(s)	1390, 2520
BstSFI	CTRYAG	5 cut(s)	758, 1202, 1287, 1848, 2021
BstSNI	TACGTA	1 cut(s)	1475
BstV1I	GCAGC	7 cut(s)	52, 94, 568, 1273, 1477, 1831, 2035
BstX2I	RGATCY	3 cut(s)	964, 1583, 2383
BstYI	RGATCY	3 cut(s)	964, 1583, 2383
BsuRI	GGCC	6 cut(s)	363, 947, 1424, 1823, 1952, 2668
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	616, 671, 1711, 2293
BtsIMutI	CAGTG	2 cut(s)	258, 626
Cac8I	GCNNGC	3 cut(s)	1515, 1842, 2310
CciI	TCATGA	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	4 cut(s)	945, 1003, 1627, 2666
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	5 cut(s)	184, 498, 1406, 2102, 2689
CspAI	ACCGGT	1 cut(s)	11
CviQI	GTAC	5 cut(s)	184, 498, 1406, 2102, 2689
DraI	TTTAAA	1 cut(s)	684
DrdI	GACNNNNNNGTC	2 cut(s)	125, 350
DseDI	GACNNNNNNGTC	2 cut(s)	125, 350
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	6 cut(s)	198, 840, 1123, 1368, 2270, 2405
EarI	CTCTTC	6 cut(s)	198, 840, 1123, 1368, 2270, 2405
Ecl136II	GAGCTC	1 cut(s)	997
Eco105I	TACGTA	1 cut(s)	1475
Eco130I	CCWWGG	2 cut(s)	1425, 1700
Eco147I	AGGCCT	2 cut(s)	1424, 1952
Eco24I	GRGCYC	3 cut(s)	433, 999, 1747
Eco32I	GATATC	1 cut(s)	2542
Eco47I	GGWCC	2 cut(s)	1003, 1627
Eco53kI	GAGCTC	1 cut(s)	997
Eco57I	CTGAAG	5 cut(s)	179, 567, 626, 752, 1959
EcoICRI	GAGCTC	1 cut(s)	997
EcoRII	CCWGG	1 cut(s)	1390
EcoRV	GATATC	1 cut(s)	2542
EcoT14I	CCWWGG	2 cut(s)	1425, 1700
EcoT22I	ATGCAT	2 cut(s)	616, 2152
EcoT38I	GRGCYC	3 cut(s)	433, 999, 1747
ErhI	CCWWGG	2 cut(s)	1425, 1700
FalI	AAGNNNNNCTT	4 cut(s)	1392, 1424, 2385, 2417
FaqI	GGGAC	2 cut(s)	785, 1513
FauNDI	CATATG	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	983, 1018
Fnu4HI	GCNGC	8 cut(s)	66, 83, 463, 582, 1287, 1491, 1845, 2024
FokI	GGATG	4 cut(s)	623, 658, 1718, 2300
FriOI	GRGCYC	3 cut(s)	433, 999, 1747
Fsp4HI	GCNGC	8 cut(s)	66, 83, 463, 582, 1287, 1491, 1845, 2024
FspBI	CTAG	8 cut(s)	660, 863, 1077, 1302, 1719, 2228, 2324, 2387
GluI	GCNGC	8 cut(s)	66, 83, 463, 582, 1287, 1491, 1845, 2024
GsaI	CCCAGC	1 cut(s)	772
HaeIII	GGCC	6 cut(s)	363, 947, 1424, 1823, 1952, 2668
HapII	CCGG	3 cut(s)	12, 25, 2521
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	34
HincII	GTYRAC	3 cut(s)	321, 860, 1019
HindII	GTYRAC	3 cut(s)	321, 860, 1019
HindIII	AAGCTT	4 cut(s)	113, 1008, 1887, 2057
HpaII	CCGG	3 cut(s)	12, 25, 2521
HphI	GGTGA	4 cut(s)	26, 48, 848, 1567
Hpy166II	GTNNAC	5 cut(s)	321, 860, 984, 1019, 2689
Hpy8I	GTNNAC	5 cut(s)	321, 860, 984, 1019, 2689
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	7 cut(s)	140, 169, 601, 1049, 1207, 1546, 2289
HpyCH4III	ACNGT	2 cut(s)	630, 2337
HpyCH4IV	ACGT	4 cut(s)	594, 805, 1474, 1920
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 91, 1814, 1853, 1862, 1958, 2020
HpySE526I	ACGT	4 cut(s)	594, 805, 1474, 1920
Hsp92I	GRCGYC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	6, 50, 436, 2506
Lsp1109I	GCAGC	7 cut(s)	52, 94, 568, 1273, 1477, 1831, 2035
LweI	GCATC	8 cut(s)	601, 613, 680, 877, 1388, 2023, 2159, 2364
MaeI	CTAG	8 cut(s)	660, 863, 1077, 1302, 1719, 2228, 2324, 2387
MaeII	ACGT	4 cut(s)	594, 805, 1474, 1920
MaeIII	GTNAC	2 cut(s)	35, 54
MfeI	CAATTG	5 cut(s)	212, 508, 585, 1974, 2484
MflI	RGATCY	3 cut(s)	964, 1583, 2383
MhlI	GDGCHC	4 cut(s)	11, 433, 999, 1747
MlsI	TGGCCA	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	3 cut(s)	163, 989, 2356
MmeI	TCCRAC	1 cut(s)	801
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	2 cut(s)	616, 2152
MroXI	GAANNNNTTC	1 cut(s)	2496
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	768, 1286
MspI	CCGG	3 cut(s)	12, 25, 2521
MspR9I	CCNGG	2 cut(s)	1392, 2522
MunI	CAATTG	5 cut(s)	212, 508, 585, 1974, 2484
Mva1269I	GAATGC	5 cut(s)	379, 1105, 1539, 1736, 2101
MvaI	CCWGG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	7 cut(s)	71, 91, 1814, 1853, 1862, 1958, 2020
NciI	CCSGG	1 cut(s)	2522
NdeI	CATATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	432, 1456
NmuCI	GTSAC	2 cut(s)	35, 54
NsiI	ATGCAT	2 cut(s)	616, 2152
PagI	TCATGA	1 cut(s)	1042
PceI	AGGCCT	2 cut(s)	1424, 1952
PciSI	GCTCTTC	1 cut(s)	198
PctI	GAATGC	5 cut(s)	379, 1105, 1539, 1736, 2101
PdmI	GAANNNNTTC	1 cut(s)	2496
PfeI	GAWTC	9 cut(s)	293, 601, 1298, 1649, 2134, 2218, 2318, 2330, 2624
PflFI	GACNNNGTC	1 cut(s)	2365
PflMI	CCANNNNNTGG	1 cut(s)	650
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	8 cut(s)	67, 84, 464, 583, 1288, 1492, 1846, 2025
PleI	GAGTC	3 cut(s)	163, 988, 2356
PpsI	GAGTC	3 cut(s)	163, 988, 2356
Ppu21I	YACGTR	1 cut(s)	1475
Psp124BI	GAGCTC	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	1390
PspFI	CCCAGC	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	1390
PspN4I	GGNNCC	2 cut(s)	432, 1456
PspPI	GGNCC	4 cut(s)	945, 1003, 1627, 2666
PstI	CTGCAG	3 cut(s)	762, 1291, 2025
PsuI	RGATCY	3 cut(s)	964, 1583, 2383
PsyI	GACNNNGTC	1 cut(s)	2365
PvuII	CAGCTG	1 cut(s)	1286
RsaI	GTAC	5 cut(s)	185, 499, 1407, 2103, 2690
RsaNI	GTAC	5 cut(s)	184, 498, 1406, 2102, 2689
SacI	GAGCTC	1 cut(s)	999
SalI	GTCGAC	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	8 cut(s)	66, 83, 463, 582, 1287, 1491, 1845, 2024
Sau96I	GGNCC	4 cut(s)	945, 1003, 1627, 2666
ScaI	AGTACT	2 cut(s)	185, 1407
SchI	GAGTC	3 cut(s)	163, 989, 2356
ScrFI	CCNGG	2 cut(s)	1392, 2522
SduI	GDGCHC	4 cut(s)	11, 433, 999, 1747
SfaNI	GCATC	8 cut(s)	601, 613, 680, 877, 1388, 2023, 2159, 2364
SfcI	CTRYAG	5 cut(s)	758, 1202, 1287, 1848, 2021
SgrAI	CRCCGGYG	1 cut(s)	11
SinI	GGWCC	2 cut(s)	1003, 1627
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SnaBI	TACGTA	1 cut(s)	1475
SseBI	AGGCCT	2 cut(s)	1424, 1952
SsiI	CCGC	4 cut(s)	463, 766, 794, 1276
SspI	AATATT	1 cut(s)	1062
SspMI	CTAG	8 cut(s)	660, 863, 1077, 1302, 1719, 2228, 2324, 2387
SstI	GAGCTC	1 cut(s)	999
StuI	AGGCCT	2 cut(s)	1424, 1952
StyD4I	CCNGG	2 cut(s)	1390, 2520
StyI	CCWWGG	2 cut(s)	1425, 1700
TaaI	ACNGT	2 cut(s)	630, 2337
TaiI	ACGT	4 cut(s)	597, 808, 1477, 1923
TaqI	TCGA	4 cut(s)	1018, 1160, 1907, 2356
TatI	WGTACW	4 cut(s)	183, 497, 1405, 2688
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	9 cut(s)	293, 601, 1298, 1649, 2134, 2218, 2318, 2330, 2624
TscAI	CASTG	2 cut(s)	258, 633
TseFI	GTSAC	2 cut(s)	35, 54
TseI	GCWGC	7 cut(s)	65, 82, 581, 1286, 1490, 1844, 2023
Tsp45I	GTSAC	2 cut(s)	35, 54
TspGWI	ACGGA	3 cut(s)	340, 1016, 1066
TspRI	CASTG	2 cut(s)	258, 633
Tth111I	GACNNNGTC	1 cut(s)	2365
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	1003, 1627
XapI	RAATTY	2 cut(s)	919, 1415
XbaI	TCTAGA	3 cut(s)	1301, 2323, 2386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	2 cut(s)	983, 1018
XmnI	GAANNNNTTC	1 cut(s)	2496
XspI	CTAG	8 cut(s)	660, 863, 1077, 1302, 1719, 2228, 2324, 2387
ZrmI	AGTACT	2 cut(s)	185, 1407
Zsp2I	ATGCAT	2 cut(s)	616, 2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.