Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513843.1

Orthogroup ID

OG0008815

Physical Location & Seq

Genomic Coordinates Reverse (-)

2307 .. 3789

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513843.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atggatgagcttaagaagatggacactgaagcactattaaagcatcgcatgatgaagttccgcaaaattggtgggttccaagaaggaatcccgatagatccaatgaagaaaaggaacatgaaactgaaagaggaacccaaggtttcagttgtggatttagagggtgaagttgaaaaggtcaaactgcaaattgaggaggcaaagaaatcctctgataagccggcattgttgcctctgactgaggcaatagaaaaactgaaaagggaggttgataatgaattttctgaggcagttaaagccctaggcttgaaagacaggtttgagtcattgcaggaagaatttttgaaaataagttcacaggaccaactcatgcatccagctctgaaagaaaagattcaaaagcttaggcatgaatttacccagagcctgtcatctgctcctaattatgaagacctaaagtataaacttgacatgctgaaggaattatcaaaagcatataaatacgaggagaagaacaacaaagctgcaacattgaagcaggaagttaacaataaatttcacgaaatcatggaacggccagatgttaaggagaagactgcagcacttagggctgagattgaaaatgccggggtgtctaaccttgatgatttggatgacagcctgaaggggaagattttggaattgaagaaagagttggactctgaatttgttggtgtcctcaagtccttggggttggatgttgagattagatcaaaagaaccaattgagaaaattttgccctcagaattcaagaccaagattgaagaattgaatgaagaaattaatcacaagattgaaaatgttatcaattcatcagacttgaaagacaagattgagttgctaaagttggaagtagcgaaggcaggtaagacgcctgattcagcaacaaaaaacagaattgtggctttggaggaacaaatcaaacaaagcttggcagcagctgttgagtcatcaaacctaaaagagaagcatgagaagcttaaagctgagagtagagtttcacacatttgcttaattactcttttagacagcttttttgctgataatgtgccggaggaaaagatttttcagaacacatgggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

374

Amino Acids

42.89

Weight (kDa)

5.7

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38040 AT2G38040
fragaria_vesca	FvH4_6g12150 FvH4_6g12150 FvH4_6g12150 FvH4_6g12150
malus_domestica	MD04G1146400.v1.1 MD12G1159600.v1.1
prunus_persica	Prupe.6G270200_v2.0.a1
pyrus_communis	pycom04g13200 pycom12g15130
rosa_chinensis	RchiOBHm_Chr3g0463941
rosa_laevigata	RLG00000024733
rosa_multiflora	Rmu_co8513843.1_g000002 Rmu_sc0006492.1_g000005
rosa_roxburghii	Rroxscaffold_6G00416120
rosa_rugosa	Rorug03G0069500 Rorug03G0069600
rosa_samantha	Rh3AG126300 Rh3BG130300 Rh3CG132900 Rh3DG131700
rosa_wichuraiana	Rw3G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	893
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	7 cut(s)	278, 338, 413, 554, 704, 771, 785
AcuI	CTGAAG	3 cut(s)	48, 497, 683
AcyI	GRCGYC	1 cut(s)	911
AflII	CTTAAG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AluBI	AGCT	9 cut(s)	10, 380, 403, 524, 969, 980, 1018, 1025, 1071
AluI	AGCT	9 cut(s)	10, 380, 403, 524, 969, 980, 1018, 1025, 1071
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	2 cut(s)	427, 980
AoxI	GGCC	1 cut(s)	575
ApeKI	GCWGC	4 cut(s)	524, 599, 974, 977
ApoI	RAATTY	7 cut(s)	278, 338, 413, 554, 704, 771, 785
ArsI	GACNNNNNNTTYG	4 cut(s)	689, 721, 1058, 1090
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	1 cut(s)	393
AspA2I	CCTAGG	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	361
AvrII	CCTAGG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	456, 599
BbvI	GCAGC	4 cut(s)	511, 611, 986, 989
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	590
BcnI	CCSGG	1 cut(s)	628
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	893
BisI	GCNGC	4 cut(s)	525, 600, 975, 978
BlnI	CCTAGG	1 cut(s)	301
BlsI	GCNGC	4 cut(s)	526, 601, 976, 979
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	77, 135
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	52, 382
BpiI	GAAGAC	2 cut(s)	456, 599
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	911
BsaJI	CCNNGG	4 cut(s)	138, 301, 627, 726
Bse118I	RCCGGY	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	4 cut(s)	138, 301, 627, 726
BseGI	GGATG	4 cut(s)	10, 373, 658, 742
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	5 cut(s)	231, 276, 603, 795, 1017
BseRI	GAGGAG	2 cut(s)	209, 521
BseXI	GCAGC	4 cut(s)	511, 611, 986, 989
BshFI	GGCC	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	221, 627, 1091
BsnI	GGCC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	97, 749
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	5 cut(s)	232, 277, 604, 794, 1018
BspLI	GGNNCC	2 cut(s)	77, 135
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	893
BspPI	GGATC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	4 cut(s)	138, 301, 627, 726
BssMI	GATC	2 cut(s)	97, 749
BssNI	GRCGYC	1 cut(s)	911
BssT1I	CCWWGG	3 cut(s)	138, 301, 726
BstACI	GRCGYC	1 cut(s)	911
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	7 cut(s)	240, 285, 404, 605, 612, 781, 1026
BstF5I	GGATG	4 cut(s)	10, 373, 658, 742
BstKTI	GATC	2 cut(s)	100, 752
BstMBI	GATC	2 cut(s)	97, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 608, 1015
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	511, 611, 986, 989
BstV2I	GAAGAC	2 cut(s)	456, 599
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	577
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	10, 373, 658, 742
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	2 cut(s)	427, 980
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	919
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	8 cut(s)	49, 118, 370, 410, 472, 568, 1010, 1116
DdeI	CTNAG	7 cut(s)	240, 285, 404, 605, 612, 781, 1026
DpnI	GATC	2 cut(s)	99, 751
DpnII	GATC	2 cut(s)	97, 749
EaeI	YGGCCR	1 cut(s)	575
Eco130I	CCWWGG	3 cut(s)	138, 301, 726
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	3 cut(s)	48, 497, 683
EcoRI	GAATTC	1 cut(s)	785
EcoT14I	CCWWGG	3 cut(s)	138, 301, 726
EcoT22I	ATGCAT	1 cut(s)	375
ErhI	CCWWGG	3 cut(s)	138, 301, 726
FaeI	CATG	8 cut(s)	52, 121, 373, 413, 475, 571, 1013, 1119
FatI	CATG	8 cut(s)	48, 117, 369, 409, 471, 567, 1009, 1115
Fnu4HI	GCNGC	4 cut(s)	525, 600, 975, 978
FokI	GGATG	4 cut(s)	17, 360, 665, 749
Fsp4HI	GCNGC	4 cut(s)	525, 600, 975, 978
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	4 cut(s)	525, 600, 975, 978
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	3 cut(s)	221, 627, 1091
HgaI	GACGC	1 cut(s)	919
Hin1I	GRCGYC	1 cut(s)	911
Hin1II	CATG	8 cut(s)	52, 121, 373, 413, 475, 571, 1013, 1119
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	401, 967, 1016
HinfI	GANTC	6 cut(s)	87, 323, 394, 698, 917, 986
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	3 cut(s)	221, 627, 1091
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	356, 547
Hpy188I	TCNGA	8 cut(s)	214, 237, 286, 384, 703, 784, 856, 1110
Hpy188III	TCNNGA	3 cut(s)	91, 560, 790
Hpy8I	GTNNAC	2 cut(s)	356, 547
HpyAV	CCTTC	4 cut(s)	77, 472, 658, 892
HpyCH4V	TGCA	5 cut(s)	187, 331, 373, 527, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 608, 1015
HpyF3I	CTNAG	7 cut(s)	240, 285, 404, 605, 612, 781, 1026
Hsp92I	GRCGYC	1 cut(s)	911
Hsp92II	CATG	8 cut(s)	52, 121, 373, 413, 475, 571, 1013, 1119
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	97, 749
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	511, 611, 986, 989
LweI	GCATC	2 cut(s)	52, 382
MaeI	CTAG	1 cut(s)	302
MalI	GATC	2 cut(s)	99, 751
MboI	GATC	2 cut(s)	97, 749
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	97
MlyI	GAGTC	3 cut(s)	332, 692, 995
MmeI	TCCRAC	3 cut(s)	675, 714, 867
Mph1103I	ATGCAT	1 cut(s)	375
MroNI	GCCGGC	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	8 cut(s)	12, 38, 294, 546, 585, 822, 1020, 1052
MslI	CAYNNNNRTG	1 cut(s)	1120
MspA1I	CMGCKG	1 cut(s)	980
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	3 cut(s)	221, 627, 1091
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	296, 608, 1015
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	2 cut(s)	97, 749
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	8 cut(s)	52, 121, 373, 413, 475, 571, 1013, 1119
NlaIV	GGNNCC	2 cut(s)	77, 135
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	87, 394, 917
PkrI	GCNGC	4 cut(s)	526, 601, 976, 979
PleI	GAGTC	3 cut(s)	331, 692, 994
PpsI	GAGTC	3 cut(s)	331, 692, 994
PshBI	ATTAAT	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	77, 135
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	2 cut(s)	427, 980
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	980
RseI	CAYNNNNRTG	1 cut(s)	1120
SaqAI	TTAA	8 cut(s)	12, 38, 294, 546, 585, 822, 1020, 1052
SatI	GCNGC	4 cut(s)	525, 600, 975, 978
Sau3AI	GATC	2 cut(s)	97, 749
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	3 cut(s)	332, 692, 995
ScrFI	CCNGG	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	52, 382
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	1120
SmlI	CTYRAG	2 cut(s)	11, 719
SmoI	CTYRAG	2 cut(s)	11, 719
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	3 cut(s)	138, 301, 726
TfiI	GAWTC	3 cut(s)	87, 394, 917
Tru1I	TTAA	8 cut(s)	12, 38, 294, 546, 585, 822, 1020, 1052
Tru9I	TTAA	8 cut(s)	12, 38, 294, 546, 585, 822, 1020, 1052
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	4 cut(s)	524, 599, 974, 977
TspDTI	ATGAA	8 cut(s)	68, 119, 134, 291, 426, 462, 828, 840
TspRI	CASTG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	7 cut(s)	278, 338, 413, 554, 704, 771, 785
XceI	RCATGY	1 cut(s)	475
XmaJI	CCTAGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.